ankrd50 (ankrd50)


Basic Information

Item Value
gene id ankrd50
gene name ankrd50
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 20746708 ~ 20779232 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026916633.2
CCGAGCGGGGGCGAAAAGCGagatatgaaaaaataagagtcgctattttttttttttttttgcactaacaAATAACGACGGATATCTTTTCCGGGATCggatttttaaatcagttgGTCTGGATTTTAAGGAGAAGCACAGGAGTGAGTGAGAGAGAAAGGCAACAATGAAATGACTCATGGGATGGACACTATGAAACCTTCAGGAACTGGATAATAAACTATAcctacaataacacaataataacgacataaaaaatgtgaacatttttttcaacatgCTACACGAATGGGAAATTTGGAAAATCTGCATCGTAGGCTGAACCTGCAAGAACCTGCCATGTTTTGAGCCATTTCTATTCCTTTGatgtgattttgtctttttttttttttaaagaagcacCATCACTGAATAACCCGATGCGTCCTCGAAGCGCGCATGTGTGGCGCAATGGGTTGGTGTGTGCGTAGCTAGCCATAAATCCGTTACCATGGCTCAGACGAGTTTACTGCAGGGAAAGCGCTTCTACTGCCGAGAGTGGGTTTTCCACAAGATCCAGCACTGCCTCCAGGAGAAAACTGGCACTTCCTGTGGCTCAGGAAGGGAAGGTCCGCCCATCTCAGGGGTTGGCGCTTCATCAGGTGCAGGGAAATCAGGATCATGGGGCGTTTTGCTGGTTGGAGGACCAGGAAGCGGCAAAACAGCACTTTGCACTGAGCTGTTGTGGCCAAGCTCGCAGCACGGCAATCATCGCGGTTTAAGCCAATTCTGCTTAGCATTTCATTTCTGCCGTGCCGACGATTCTGACACGGTGTGTGTGAGCGGGTTCATACGAGGCCTGGTGACACAGATCTGCAGAAGTGGACTCGTACCGCAATATGAGGAGAAAATTCGTGACCCTGCCATCCAGAACGCTCTGAAGCCTGGAGAGTGTGAGAGGAACCCGAGCGAGGTGTTTAAAAGgtgcgTATTGTTGCCGCTTTTGAGCTgcactcctcctcctcaggCCCTGTTTTTGCTTGTCGACTCCATAGACGAGGGAATGAAAGGGGGCGGGACGGAGTCCAGCTCTGGCCCCTTGAACCCACGCAGCATCGGCGAGCTTCTCTCTTCCCATCATGAACTCCTCCCACCATGGCTCCTCCTCATCTGCTCCGCCCGCCGCCAGAACAAAAACATCACCAAGCTTTTTACAGGTTTCCGCAAAATCAGTTTGGATGACCTACGCAAAGCTTACATTGTTAAGGATGTTCAGCAATACATCTTGCACAGGCTAGACCAGGAAGAGGCACTACGGCAACACCTGACCAAGGAGACAGCAGAAATGCTGAACCAGCTCCATATTAAGAGCAGCGGCTGCTTCTTGTACCTGGAGCGTGTCCTGGATGGCGTGGTTGATAACTTCATCATGCTGCGTGAGATCCGCGacatcccaggaacactaaATGGACTTTACCTGTGGCTCTGCCAAAGACTTTTTGTCAgaaagcaatttgccaaagtgCAACCCATCCTGAATGTCATTCTGGCCGCATGCAGGCCGTTGACAGTGAAGGAGTTGTACCATGCCGTCTGGACTAAAAACATGACCCTGACCATGGAGGAGTTTCAGAAAAAGATGGACATTCTCTCCAAATTGCTTGTGGATGGACTTGGAGGTACCAAGATTCTTTTTCACTACAGTTTTGCTGAGTGGCTTCTTGATGTTAAGCACTGCACTCAAAAATACCTTTGCAATGCTGCTGAGGGTCACCGGATGATGGCTATGAGCTATACGTGTAGAGCCAAGCAGCTCAAACCTCTGGAGGTGCAGGAGTTTGCTTTTCACTTGATCAACTCCAACCTGCAGATTGAACCTTTTAACCTAGCTCTGTGGATGGTGTGGAATGGCACACCTGCAAAAGACTCTCTTTCTACATCCATTCCCAAAGAGCAGGAGGTCTTGCAGCTTTTGGTCAAAGCTGGAGCTCACATCAGCAATGAGGATGATCATGCTTCATGCATTGTTCAGCAAGCCCTGGAGCGAGAGGATTCCATCCGCACTTTGCTTGATAATGGTGCTTCAGTAAACCAAAGTGACTCCAGTGGACGAACTCTACTGGCTAATGCAGCGTACAGTGGCAACCTGGATGTGGTGAATCTGCTCATTTCCAGAGGTGCCAATATGGAGCTTGAGGACAACCACGGACAGACACCACTTACACTTGCTGCCAGACAAGGACACACCAAGGTAGTTAACTGCCTGATCGGCTGCGATGCCAACATCAACCACACGGATCATGATGGCTGGACTGCTTTAAGGTCTGCAGCTTGGGGTGGTCACTCTGAAGTGGTCTCGGCACTCCTCTATGCAGGTGCCAAGGTTGATTGTGCAGATGCAGACAGCAGAACTGCCCTGAGGGCTGCAGCATGGGGAGGTCATGAGGATATTGTCCTTAACCTTTTACAGCATGGAGCAGAAGTCAACAAGGCTGATAATGAAGGAAGGACTGCACTTATTGCGGCAGCCTACATGGGACACAGAGAGATTGTCGAGCACCTGCTGGACCATGGTGCTGAGGTAAACCATGAGGATGTTGATGGACGAACAGCTTTGTCTGTTGCAGCCCTCTGTGTCCCTGCTAGCAAAGGCCACGCCTCGGTGGTTAGTCTTCTCATTGACCGTGGTGCTGAAGTGGACCACTGTGATAAAGACTGCATGACACCTCTTCTGGTTGCTGCCTATGAAGGGCATGTGGATGTAGTGGATTTGCTTCTAGAAGGAGGAGCAGATGTTGACCATACAGACAATAATGGACGAACACCTTTGCTTGCTGCAGCATCCATGGGACATGCTTCTGTTGTCAATACATTGCTTTTTTGGGGTGCAGCCGTGGACAGTATTGATAGTGAAGGAAGGACTGTGCTCAGCATTGCATCTGCTCAAGGGAATGTGGAGGTGGTCCGAACTCTGCTGGACAGAGGCCTCGATGAAAATCACAGAGATGATGCTGGTTGGACACCTTTACACATGGCAGCATTTGAGGGACATAGACAGGTGTGTGATGCCCTCATTGAACAAGGTGCTCGATGCTCAGAGGTGGACAATGATGGACGTATACCCTTGATCCTGGCTGCTCAGGAGGGACATTATGACTGTGTGCACATCCTCCTTGAGAATAAGTCCTGCATTGATCAGAGAGGGTATGATGGAAGAAACTCCCTCAGGGTTGCAGCTATGGAAGGACACAGAGATATTGTAGAGCTTTTGCTGAGTCATGGAGCTGACATAGACTACAAAGACGCTGATGGCCGCCCAACCTTATACATACTGGCACTTGAGAATCAGCTAGGCATGGCTGAGTATTTTTTAGAGAACGGAGCGAATGTAGAGGCGAGTGATACTGAGGGCAGGACAGCCCTTCATGTTTCCTGTTGGCAAGGCCATGTGGAAATGGTAAGATTGCTGATCAGCTACCATGCAGATGTGAATTCTTGCGACAATGAAAAGCGATCTGCTCTTCAATCTGCTGCGTGGCAAGGTCACACAAAAGTCGTCCAATTTTTGATTGACAGTGGCACTCATGTTGATCATACTTGCAATCAGGGAGCCACCGCACTTGGCATTGCTGCTCAAGAAGGTCACATTGATGTAGTACGCATTCTTCTTGAGCATGGTGCAGATCCAAACCATGCAGACCAGTTTGGTCGTACAGCCATGAGGGTGGCAGCCAAAGGAGGCCACTCAATGATCATTAAACTTTTAGAGAAATATGGTGCCACTAGTCTGAATGGCTGCAATCCCTCACCTATACATACTATGGAGCAGAAAACCCCACTCTCAGTTACAGGAAAGATGCAATCACTTACTATCAAATCCAGTAGTTCTGGTAGCACAGGAGCTGGAGATGTTCAACCATCAGGTCGAGGTTTATCTAATGGACCTGTTCATGCTTTCAGCTCCCCTTCTGAATCTCCAGACTCCACAGTGGACAGGCAGAAGTCCTCCCTCTCCAATAATTCCCTGAAAAGCTCAAAGAACTCATCGCTGAGGACTACTTCGTCCACCTCAACAGCCCAGACAGTGCCCATAGATAGTTTCCATGGACTTAGCTTCACAGAGCAAATCCAGCAGCACTCTCTGCCTCGAAGTCGCAGCAGGCAGTCTATAGTTTCCCCTTCTTCGACCACAAAGTCCATCGGCCCACAGCCCGGATCACCTACCAGTGAATTTGATTGGAGTCAAGTGAAACCAGGTCTGAAATCCTCTAAAGGAGGAAAGAGTGGGAATGGGACAAACTATTGCACAAGAAAGGAAGGATCTGGAGACAAGAAGAAATCTAAAAACAGTAATGCCCTTCCACATGGTCAGGTTTTGGAATATGAGATGACCCAATTTGATAAAAGAGTTACTCTCAACAAGCCAGTGTCCAACTTTGCAGTAAAGGATCCTCATTGCAAGATTGTGCTGGGAGGCTCCAACACTCTGGACTCTGGCCAATCACAGGAGTCATATTATATCCAGCAGCAGAGTTGTGctgagaagaagagaaatggGATTATGACCAACCCTAACTATCACCTACAGGGAAATCAAGTCTATTTAGGGAGAGTCTCAGTACCCAGAACTGTGCACAACAGGGGACAGCAGGATGTTCTTGACAACTACCCATTAGGGGAGTCTGAATTAAGCCTTAAACAAGCTCTGAAACTACAGATTGAAGGATCAGACCCTGGGTTCAACTACAAGAAAGAGACGCCATTATAACTGGCATCTTAAACTGAAACCCTCATCCAGATGTTATGGAGAATGTGCCAAAGCAGCTGTTTTCAtcgggaaaaaaaatatcacggGTTGTATGTATGAAAATTCTCAGATCGAAAAGTGCTTGATCTAGAATCAGATTTTATATGTCCTAATATTGTTGAACACAACATGAAATTATCAGAAAGGACCTGATCCTAGATTGGCACTTAACTCCTGAAATGTATACATATGCTCCCAGAAACCATTGCTACTCAGCCCTCAATGAAACACCTCAGCTAGAATaaaaagaaggaggaaaaaaaaaaaaa

Function

symbol description
ankrd50 Involved in endocytic recycling. Predicted to be located in endosome.

NR:

description
PREDICTED: ankyrin repeat domain-containing protein 50 isoform X1

GO: NA

KEGG:

id description
K21440 ANKRD50; ankyrin repeat domain-containing protein 50

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026916633.2 True 5055 mRNA 0.47 5 20746708 20779232

Neighbor

gene id symbol gene type direction distance location
LOC113528524 LOC108258618 coding upstream 301762 20439441 ~ 20444946 (+)
leprotl1 leprotl1,LOC103152176 coding upstream 307840 20430641 ~ 20438868 (+)
drd5a drd5,LOC107701828 coding upstream 744028 20000958 ~ 20002680 (+)
zbtb49 zbtb49 coding upstream 749775 19963720 ~ 19996933 (+)
mcm7 mcm7,LOC107716516,LOC107744067,LOC107665623 coding upstream 845724 19888315 ~ 19900984 (+)
dele1 kiaa0141 coding downstream 256028 21035260 ~ 21044307 (+)
LOC113528291 LOC108261075,LOC108434533 coding downstream 268029 21047261 ~ 21082014 (+)
tlr1 LOC108258270 coding downstream 402181 21181413 ~ 21184850 (+)
f8 LOC108279904 coding downstream 427227 21206459 ~ 21226848 (+)
LOC113527948 NA coding downstream 509248 21288480 ~ 21293794 (+)
G214369 NA non-coding upstream 274944 20471529 ~ 20471764 (+)
LOC113528473 NA non-coding upstream 353488 20264198 ~ 20393220 (+)
G214144 NA non-coding upstream 532281 20213406 ~ 20214427 (+)
G214098 wdr1 non-coding upstream 564830 20071695 ~ 20181878 (+)
G214012 NA non-coding upstream 776552 19968008 ~ 19970156 (+)
LOC117598998 NA non-coding downstream 65909 20845141 ~ 20852594 (+)
G214548 NA non-coding downstream 129596 20908828 ~ 20926678 (+)
G214694 NA non-coding downstream 365588 21144820 ~ 21158088 (+)
G214723 NA non-coding downstream 383668 21162900 ~ 21163304 (+)
G214731 NA non-coding downstream 406034 21185266 ~ 21186303 (+)
LOC113528520 znf518b other upstream 573356 20022509 ~ 20173352 (+)
G214015 lyar other upstream 765328 19978314 ~ 19981380 (+)
LOC113528304 evc2 other upstream 793422 19933824 ~ 19953286 (+)
LOC113528458 LOC108275785 other upstream 834976 19873076 ~ 19911732 (+)
LOC113528521 tnrc6a,LOC107719974,LOC107590441,LOC107721518,LOC107654452,LOC107688138 other upstream 1291674 19373236 ~ 19455034 (+)
nudt6 nudt6 other downstream 232542 21011774 ~ 21024087 (+)
hopx hopx other downstream 561184 21340416 ~ 21349086 (+)
LOC113540568 LOC108280981,LOC108280985,LOC108277574,LOC108277545,LOC108280967 other downstream 702790 21482022 ~ 21513040 (+)
LOC113540569 LOC108280981,LOC108280985,LOC108277545,LOC108277574,LOC108280967 other downstream 735341 21514573 ~ 21565376 (+)
G215015 LOC108275153 other downstream 866848 21646080 ~ 21649152 (+)

Expression


Co-expression Network