xpo6 (xpo6)


Basic Information

Item Value
gene id xpo6
gene name xpo6
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 13670909 ~ 13695259 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026916672.2
CCGGCCCAAGATTAAGATTTCACTTCCGGTGGGGAGGGGCGCTCATGCGGAGAGAGGAAGCTACGAGGCCTGCACGAAAAAAAGAGCTATTCTACAAACTACAGGAGTGGCCCAGTTACTTTCTGTCGCGCTGAAAAAACGGGGCCGAGTGCTATTTTAATATCACAACGCAGATTTTGTATCTAGCGGTACGATAAGGCTGTTTGGCGATTTTGCACGCGCGTGTTGACCTGCATCCGGGAGGCGGGTGGTTGTCACTCCTCACAGCCCCCGTATTGCAGCAGGATCAACAATAACAAGTGTCGCCTTAGCGAGCGCAGGGACTGAGCCAGGCCCCGGGTCTGTGGTAAACATCATCGCGATGGCGTGTCTCGGGGTTTATTATAGATGGTGAGAGATTTGCCCGGTGAAAGTCGGGCAGTATGAGCCAGCACATATTCAGACTGTAGCCTCAGAAACGCAGCAGCCGGAGAGAACAGAGACCGGACATGGCGTCAGAGGAGGCCTCGTTGCAAGCACTAGAAAGTCTTATGACTGAGTTTTTCCACAGCTGCACTACTAATGATCGCAAGAGAGAGATTGAGGAACTGCTGAATAGTTTTGCTGGCCAGCCGGGCTCCTGGAGACACTGCCTCTACTTCCTCTCCAATAGCAGAAATGAATATGTCATGATGTATAGTCTTACAGTATTTGAGAACCTGGTCAACAAAATGTGGGTCGGTGTAGCCAGTGAGGATAAAGCAGAGCTTCGTAGCTGCTTGCCAAAGTTGTTGCTGTCCCAGCATGCTCTGTTGCCCTTCTTCATCAGAAATAAGCTCTGTAAAGTCATCGTGGACATCGGACGCCAGGATTGGCCAATGTTCTACCATGACTTCTTTAGCAATACTTTACAGTTGGTGCAGTCCCCTACTCTGGCACCCCTGGGTTTGGTTCTATTGAAGATGACGTCAGAAGAGTTGGTGTGTCCGAGGGAAGATTTGAGCGTTGCTAGAAAAGAGGAGCTGAAAAAACTCCTACTGGAACAGATACCCACTGTATTAAACCTACTGACTGGTATTCTGGAAACTGTTTGGGATAAACACAGTGTATCGGTAACGACGCCTCCGCCATCACCTACATCAAGAGAGACGGGTGTACTGACGGGCGATGCCACTCCGCTGGGGCTGGAGTCAGAGAGTAGCACGTTGTGTCTGCTGGCTCTGGAGTGCTTGGCTCATCTCTTCAGCTGGATCCCTCTGTCCTCCTCCATCACACCAGCCCTCCTGGCCTCCATCTTCCACTTCGCTCGCTTCGGCTGCCAGCTGCCAATCAAAACCAAGCCTCCACCCACTTCCAATGGAGACTCTGCCCCCGGCAGCCTCTTAGCCAATGGGAGCCAGGGAAGGACAGGACACATGGTGGATCACGCCAAGCGGGCCCAGTTAGGCATCATGGCTATGAACTGCATTAACGAGCTGATGTGTAAAAACTGCGTGCCACTGGACTTTGAGGAGTTTCTGCTCCGCATGTTTCAGCAGACTTTTTACCTCCTACAGAGactcacaaactcacacaccaacatacacacagtcaaaaaCAGACTGCAGGAGTTGGATGAAAGTTATTTGGAGAAGTTCACAGATTTTCTGCGACTCTTTGTAAGTGTCCATCTAAGGAGGATCGAGTCCAACGCTCAGTTTCCTCTGGTGGAGTTTCTGGCTTTACTCTTTAAGTACACCTTCAACCAGCCAACCCATGAGGGCTACTTGGCTTGCTTGGATATATGGAGTATATTCCTGGACTACCTAACCACCAAAATCAGGAGCCGACTGGCCGACAGAGATAGTGACttaaacagGTATAAGGATGCTTTAGTGATGCTGCTCAGAGAGGTCCTGAACCGTATTCAGTTCAGGTTGAACCAGAGTCAGCTGGAGGAGCTGGACGATGAGACTCTAGATGATGATCAACAAACTGAGTGGCAGCGATATTTGCGTCAGAGTTTGGAGGTGGTTGCCAAGGTGATGGAGCTGCTCCCATCTCAGACCTTCTCCATTCTGttcCCAGTGCTTCAGGAGGATTTGGAGGTTTACCTTGGGCTGCAGCAGTTCATCGTTACAACAAGAACAAatCGCAGGCTGAACATCACAGCAGAAGCTGACTGTAGGAAGCTGCACTGTGCGCTGAGAGATTTGAGCTCCCTGCTGCAGGCCGTAGGGCGTTTGGCTGAGTTTTTCACCGGAGATGTCTTTACTGCTCGCTTCAACGATGCCCTGGCTATTGTCCAGAGGCTTGTGGAGGTCACTTGTTATGGCTCTCAGATCAGCCTGTATGATGTGGAAATGGCTGTCCCTTCAGTTCTTAAACCTGACCTTATAGATGTCCATGCCCAGTCTTTGGCTGCACTGCAGGCGTATTCTCACTGGCTGGCACAGTTCTGCAGTGAAGTACAGCGGCAGCAGGATCAATCGCAATTCGTTGACCTCATCACATCATGCATGGCCGCCACGACGCCCCTCATTAACGCAAAGGTTCCTGAGAAATTGCTATTATCTGCTTGCCATCTCCTGGTATCCATGGCAACAACAGTGAGACCTGTGTTCATGGTGTCATTATCTGCGGTACAGAATGTCTTCAATCTCATCACAGAAAACCACAATCACAGGCTGCctcaggaggcTCATGTGCTGGTGTGCAGGGCTTTGTCAAACATGCTTCTTTTACCATGGCCAAGTCTACCAGAGGCAGAACAGCAATGGCCAAGTCGATCAACCAGTCATGCACGTCTAATCAGCACCATCACACATCAGTACCGCCTGCTGCCCCGCCCACCAAACCACCATCCCAACAgtaaAGTGGTGCTGCAGCAGACCCTGTGTGTGCTGAGGGATCTAGTGGACAGCATATCAGGAGAAGCCACAAAGTCTCGTCAGATATGTTACCAGAGCCTGCAGGagtctgtgcaggtcactctgGCTCTGTTCCCACTGTACATTCAGCAGCCTGATGTAACAGATGAGATGCTGAGTTTCTTCCTCACACTATTCCAGGCACTTCGGGTGCAGATGGGAGTCACATTCACTGAACAAATCATACAGACTTTCCTCAGCATGTTCACCAGGGAGCAGCTGGCAGTCAGCATCCTGCAGGAGGGTAGTGCTGGATCGAAAGTTGTTGAAAAGTTCCTCAAGATTCTGCAGGTTGTGGTTCAGGAGCCTGGTCAGACCTTTAAACCTATGTTACCCAGCATCCTCAGCCTTTGTATGGAGCAGGTGTACCCTATAGTGGCAGATCGCTCCTGTCCAGACGTGAAAGCTGAAATGTTCGAGCTACTCTTCCAAATTCTCCATCAGAACTGGAGGTTCTTCTTTAAGACCTCAGTCCTTAACAGTGTTCAGAGAACAGGAGCAGACGAGCACATGGAGAACGAGGCCCAGTTTATTGCTGCCATGCAGGCATTTGGACAGTCCTTCCTGCAGCCAGATATCCACATCTTCAAACAGAACCTGAGCTATCTGGAGATTcttaacacaaaacacaaactgtaCCACAGGAAGCTGTTCAGGAACTCCATGCTCTTCCATTTCATCAATGTGCTGCTGCAAGTTCTCCTGCACAAGAGCCATGACCTCTTGCAGGATGACATCACTCTGGCCCTCTACAACATGGCTGCTGTAGATTTCCCAGCTTTTTATTCATCCTTCCTGCCAGAGTTCCTCAACGGCTGCCAAGGCCTCGACCCTCACCAACGCACAACGCTCGCCCGCAACTTCACACCAGAGAGGGACCTGCCATCATTTTCTCAGGGAGTGTATCGATTGGTGAATGATCTGCGTTTTTACAGACTGTGCAATGGAAGCTTGCCTCCAGGAACGCTGAAATTATAGCGATGTTCCCTGCTAAGTGCAAAGCCAAACCATGTCTCGTCTTCACGAGGAAGCAGATCACTTCCACACAAGTGATCAAGCCACGCCCTCTGCCAGAACCCAGCCTATGATCTCTTGGTAGTGGCGTGTTATCAGAACCACACCCGTTGTGGGGTTTGTTagctttttttatgtttatttcagCAAAAGTTCACATTGCCAATGATCATGAGCCAAAGTGTACGTTCCACTGCTGCAGTGGAGACTGGAGCTGGTGCCAGTTAAAGTTACGTGCATGTTTAAGCACTAGTGGAGGGGGTTTGTAAGCACTGTGGCTTGGGGTTTGAATTCTTGTtcttttaaaaggaaaatgcCATTGAAAGCACTCAGCTGCAGTTGAGATGAACAGTTTTGATTTAAACAGAGCGTACACAGTTTGACATGGACGCTTGATTGGGTCACTAATCATCGATTGGTGACTAACACCGTGTGAGTACGGTTTTAAAAACAGACTGCTGTGATTCAGAGCGCCGAATTTCGTTTTCTCCAATGCTTGATTTTAACGCCTTCATCCCCATGGAGACGGACTCTCACTCCTTTCATATCATTCCATCCTGATTCAGGAGATAGACCTTCAAtaaagttttataaagaaacacCTGTGTATTTGCTGCTCTTTAATTTGGTCACTCCTTAAAATCTTGTGGTTAATtcttaacaacaacaataataataataacaataatcgGAATATAGATTAAAGTTCAGTCAGTGATAATTGGAAATTATTTTGGAagattttatgttttacataATCTACTCTTCATCCGAaagttctgtttgtttttcctatCTGATGTGTGTAATGACTATCAAGGgatgtcagaacttttttttttttaatttaatttaatttaatgccaTGTTGATTTTGCCATATTGGCCAGCTGTCATTCAGCCACAGCTCCACCTGTGCAAATATAACATTCTAAACTAA

Function

symbol description
xpo6 Predicted to enable nuclear export signal receptor activity. Predicted to be involved in protein export from nucleus. Predicted to act upstream of or within intracellular protein transport. Predicted to be located in cytoplasm and nucleus. Orthologous to human XPO6 (exportin 6).

NR:

description
exportin-6 isoform X2

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K25204 XPO6, RANBP20; exportin-6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026916672.2 True 4842 mRNA 0.48 25 13670909 13695259

Neighbor

gene id symbol gene type direction distance location
nme4 LOC108276282 coding downstream 1418 13662163 ~ 13669491 (-)
gadd45gip1 gadd45gip1 coding downstream 172746 13494986 ~ 13498163 (-)
swsap1 swsap1 coding downstream 235553 13432227 ~ 13435356 (-)
LOC113528569 NA coding downstream 402735 13241850 ~ 13268174 (-)
nfil3-6 LOC108279453 coding downstream 444034 13223244 ~ 13226875 (-)
antkmt fam173a,LOC108276247 coding upstream 1354 13696613 ~ 13702527 (-)
LOC113528466 LOC108276218,LOC108441001 coding upstream 19141 13714400 ~ 13715455 (-)
LOC113527894 LOC108278278,LOC108412261 coding upstream 68636 13763895 ~ 13809443 (-)
zgc:112183 rab37,zgc:112183,LOC108278300,LOC107665712,LOC107654586,LOC106606976,LOC105012908 coding upstream 120467 13815726 ~ 13833885 (-)
recql5 recql5 coding upstream 208899 13904158 ~ 13938439 (-)
G210871 NA non-coding downstream 7112 13663416 ~ 13663797 (-)
G210858 NA non-coding downstream 10095 13591439 ~ 13660814 (-)
G210690 NA non-coding downstream 145329 13525381 ~ 13525580 (-)
LOC113528343 NA non-coding downstream 195447 13463539 ~ 13475462 (-)
G210640 NA non-coding downstream 224471 13445736 ~ 13446438 (-)
G210886 NA non-coding upstream 28292 13723551 ~ 13726829 (-)
G210888 NA non-coding upstream 37160 13732419 ~ 13786511 (-)
LOC113527951 NA non-coding upstream 44810 13740069 ~ 13747999 (-)
G210877 NA non-coding upstream 63267 13758526 ~ 13824293 (-)
G210915 NA non-coding upstream 173940 13869199 ~ 13869573 (-)
LOC117598755 NA other downstream 271684 13395466 ~ 13399225 (-)
elof1 elof1,LOC103393660,LOC100703874,LOC106589640,LOC103384163 other downstream 275452 13390616 ~ 13395457 (-)
tom1 LOC108260160 other downstream 1111696 12546333 ~ 12559213 (-)
msrb1a msrb1 other downstream 1331640 12333854 ~ 12339269 (-)
LOC113528332 hs3st6,LOC102795972 other downstream 1355411 12297776 ~ 12315498 (-)
xylt2 xylt2,LOC107748866,LOC107665700,LOC107654585 other upstream 145907 13841166 ~ 13871131 (-)
mcrip1 mcrip1,fam195b,LOC107654575 other upstream 298617 13993876 ~ 14001037 (-)
LOC113528401 ppp1r27a,LOC108279187,LOC107748880,LOC107558871,LOC107654574,LOC107665625,LOC107548727,LOC107743019 other upstream 308910 14004169 ~ 14006512 (-)
pecam1 LOC108279165 other upstream 322356 14017615 ~ 14029641 (-)
G211151 usp36 other upstream 825018 14520277 ~ 14520975 (-)

Expression


Co-expression Network