foxred2 (foxred2)


Basic Information

Item Value
gene id foxred2
gene name foxred2
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 11648149 ~ 11657127 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026916691.2
ATCCATATAGTGACGTGTATTGTGTAGCTACGGCGTGCGAAAAATATGTTATGAAAGCTATGTGGAAAGATGCTGATCCAATTCAGGACGTCAGATTGTCTTGCTCAGACTTTTGAGGGACAGAGTGGTCGATTTTGGTGAAAGTGCTCATGGGGCTGAGCCTGTCCGTCAGCTGCTTCCTGTCACTCATTTCTCTGGTTCTAAGTGTCCTTGGTGATCCCAGTGATATCAGTATCCATCACCATGACTACTGTGTGCTTGGGGCGGGGCCTGCAGGCCTACAGATGGGCTACTTCCTGTCCCAGAGTCAGAGAGATTACATAATACTGGAGCGCAATGCTGGACCAGGAAGTTTCTTCCAGAAGTATCCTCGGCATCGAAAACTCATCAGCATCAACAAAATCTACACAGGGAGGCGGAACAAGGAGTTTAACCTGCGCCATGATTGGAACTCCCTGCTGAGTCACAGGCCAGACCTGCTGTTTCAGAGATTCAGCCGGGACCTGTACCCTGAAGCTGACGCCTTTCTTCGCTACCTCTCTGTGTTTGAGAAAGAACTGGGGCTGCAGGTTAAATATAACACTGATATAGGGAGCATTCGAGCTTTGCAGTTTGGAGAAAGTGGACATAAAGGCTACATACTGACTGATCAGCATGGGGTGGATTATAAATGCAGAGTTCTGTTAGCGGCCACTGGGCTCTGGGTCCCAGAGGAGGTCAATTTTGTGGGCTCTAATTTAGTAGAAGGATACGAGTCCATCTCCACTGATCCTGAGGAGTACAAAGATCAAGCTGTGCTGATCCTGGGCAAGGGAAACTCTGCCTTTGAAACAGCACAGAGCATTCTGGGAAGAGCTAGCCGGATCCACTTGTATAGTCCGAGCCCGGTACGACTAGCATGGCAGACACACTATGTCGGAGACCTCAGGGCGGTGAATAATGAGTTGTTAGACACGTACCAGCTAAAGTCTTTGGATGGCTTAGTGGAGGGAAGACTGGAGGACATTGCTATTGTCCGTGGAGGAAGAATGAAAAGAAGAGCTGGAAAAAATAAGACGGAGAAGTCTTCAGAGAAGAAAGAGCACCTCTATCTTACTCTGTTGGAACTTTTGGATAGCCGTAGTGTCAACCAGAGCACTAATATTACTGCAGAAAACCTGCCTGGTTACCATGACGACAACTTCTCGCTGAGACAGCCGTATGACCGTGTAATCCGCTGCCTGGGATTCCGCTTCAACTTCACCATCTTTAACGTCTCTGCCCGTCCACCACGCAGCAGTGTTGCTCGTGGCCGTCTGCCAGCAGGGACAGCATGGTACGAGGCCAGGGGGACGCCCAATATGTTCATCTTAGGAACCTCAGCCCACTCCAGAGACTACCGAATGTCTGCTGGAGGATTTATTCATGGATTCCGCTACACAGTGCGTGCTGTGCATAAGGTCTTGGAGCAACGTTACCATAACAATGCTTGGCCAGCTACCAAACTGCACACCAGTCACTTGCTGTCCTGGATTTTGAAGAGAGTGAATGAAGCATCTGGACCATACCAAATGTTTGGGGTTTTGGGGGACATTGTACTACTGCAAGGACCTCACTGTGAGTATCTGGAGGAGTTTCCTGTGCAGGCGCTACCTCATTTTGCTGCTCTGACTGGTCGGAATGTCTCTGAGCATGGCCTTCTGGTTGTGATCATGCAGTATGGACtgaaccacacagacacacttggGCCAGGCCGTGCTGAGTCAGAGTGGACCAAAGCCTGGAAGTCTAATTTCCTTCACCCTGTCATTTACTACTACAGTACACTGCCTACAGagagagatatgagGCAGCGTCCAGTTGGATGGCCTCTGCCACGTCCTGATGCTGTGCATCACATGGTCGAAGACTTCCTGACTGAGTGGGACCAGCCCGTGTCTCACAGTCAGCCCCTGCGTCGCTTCCTCGAGCACTGCCTTCGGACAGACCTCAGGGCGTTCTATGCAGaATCCTGCTTCCAACTTTCCCTCACCAATCTCAAGCCCCCCATCTTCTGCCGTCAAGGCTACTTAAACAAAgcaggcattgtgggtaatagcCACCTGTGGCAGCATGCCCGTGAGGCAGGGCTCATGCCAAATCATCATAGATCAGTTCTTCGTGCTAATGATGGGTCATTTTCTGAATACCTGTCACAAACTGGAGCTGCGGTGACTTCAACAATCAACTCTGATCTCTAAAGCGAGTAAAACAAGCCAAAGACTGATTCTCTCATAAGttattatgaaatatatttaattatgaaATATCAATATTTACCTGTACCTCTTAATGATATTTACTTAACCAAATGCCTCATATTTTTCCAAAATCGTTATGACACTATAATTTGTCAGATGGTTTTTAATAATACAGTGTTGTATGTGCTGAGCTTGTGGTTTGTGTTGGatacttaatttatttttcaaacttaATGAGTCCTGTTACCTGTATGTGtttaacacacaaaatacatgCCACTACTGAGTGAGATCCTGTACAAAGATGTTGGTAAAACCTGGAATTCAACTAAAACTGAGTGTTCCCactt
>XM_034310072.1
GTCGATTTTGGTGAAAGGTATGTGGTTTCAGCTGAAAAATCACGGCATTTCACAGGGTATTGATTCTGTGTTTAGCGCCGCTGAGAGTAGTGGCATCTCCCGGAATCTGAGCTCTGCGGCCGGTGCTCATGGGGCTGAGCCTGTCCGTCAGCTGCTTCCTGTCACTCATTTCTCTGGTTCTAAGTGTCCTTGGTGATCCCAGTGATATCAGTATCCATCACCATGACTACTGTGTGCTTGGGGCGGGGCCTGCAGGCCTACAGATGGGCTACTTCCTGTCCCAGAGTCAGAGAGATTACATAATACTGGAGCGCAATGCTGGACCAGGAAGTTTCTTCCAGAAGTATCCTCGGCATCGAAAACTCATCAGCATCAACAAAATCTACACAGGGAGGCGGAACAAGGAGTTTAACCTGCGCCATGATTGGAACTCCCTGCTGAGTCACAGGCCAGACCTGCTGTTTCAGAGATTCAGCCGGGACCTGTACCCTGAAGCTGACGCCTTTCTTCGCTACCTCTCTGTGTTTGAGAAAGAACTGGGGCTGCAGGTTAAATATAACACTGATATAGGGAGCATTCGAGCTTTGCAGTTTGGAGAAAGTGGACATAAAGGCTACATACTGACTGATCAGCATGGGGTGGATTATAAATGCAGAGTTCTGTTAGCGGCCACTGGGCTCTGGGTCCCAGAGGAGGTCAATTTTGTGGGCTCTAATTTAGTAGAAGGATACGAGTCCATCTCCACTGATCCTGAGGAGTACAAAGATCAAGCTGTGCTGATCCTGGGCAAGGGAAACTCTGCCTTTGAAACAGCACAGAGCATTCTGGGAAGAGCTAGCCGGATCCACTTGTATAGTCCGAGCCCGGTACGACTAGCATGGCAGACACACTATGTCGGAGACCTCAGGGCGGTGAATAATGAGTTGTTAGACACGTACCAGCTAAAGTCTTTGGATGGCTTAGTGGAGGGAAGACTGGAGGACATTGCTATTGTCCGTGGAGGAAGAATGAAAAGAAGAGCTGGAAAAAATAAGACGGAGAAGTCTTCAGAGAAGAAAGAGCACCTCTATCTTACTCTGTTGGAACTTTTGGATAGCCGTAGTGTCAACCAGAGCACTAATATTACTGCAGAAAACCTGCCTGGTTACCATGACGACAACTTCTCGCTGAGACAGCCGTATGACCGTGTAATCCGCTGCCTGGGATTCCGCTTCAACTTCACCATCTTTAACGTCTCTGCCCGTCCACCACGCAGCAGTGTTGCTCGTGGCCGTCTGCCAGCAGGGACAGCATGGTACGAGGCCAGGGGGACGCCCAATATGTTCATCTTAGGAACCTCAGCCCACTCCAGAGACTACCGAATGTCTGCTGGAGGATTTATTCATGGATTCCGCTACACAGTGCGTGCTGTGCATAAGGTCTTGGAGCAACGTTACCATAACAATGCTTGGCCAGCTACCAAACTGCACACCAGTCACTTGCTGTCCTGGATTTTGAAGAGAGTGAATGAAGCATCTGGACCATACCAAATGTTTGGGGTTTTGGGGGACATTGTACTACTGCAAGGACCTCACTGTGAGTATCTGGAGGAGTTTCCTGTGCAGGCGCTACCTCATTTTGCTGCTCTGACTGGTCGGAATGTCTCTGAGCATGGCCTTCTGGTTGTGATCATGCAGTATGGACtgaaccacacagacacacttggGCCAGGCCGTGCTGAGTCAGAGTGGACCAAAGCCTGGAAGTCTAATTTCCTTCACCCTGTCATTTACTACTACAGTACACTGCCTACAGagagagatatgagGCAGCGTCCAGTTGGATGGCCTCTGCCACGTCCTGATGCTGTGCATCACATGGTCGAAGACTTCCTGACTGAGTGGGACCAGCCCGTGTCTCACAGTCAGCCCCTGCGTCGCTTCCTCGAGCACTGCCTTCGGACAGACCTCAGGGCGTTCTATGCAGaATCCTGCTTCCAACTTTCCCTCACCAATCTCAAGCCCCCCATCTTCTGCCGTCAAGGCTACTTAAACAAAgcaggcattgtgggtaatagcCACCTGTGGCAGCATGCCCGTGAGGCAGGGCTCATGCCAAATCATCATAGATCAGTTCTTCGTGCTAATGATGGGTCATTTTCTGAATACCTGTCACAAACTGGAGCTGCGGTGACTTCAACAATCAACTCTGATCTCTAAAGCGAGTAAAACAAGCCAAAGACTGATTCTCTCATAAGttattatgaaatatatttaattatgaaATATCAATATTTACCTGTACCTCTTAATGATATTTACTTAACCAAATGCCTCATATTTTTCCAAAATCGTTATGACACTATAATTTGTCAGATGGTTTTTAATAATACAGTGTTGTATGTGCTGAGCTTGTGGTTTGTGTTGGatacttaatttatttttcaaacttaATGAGTCCTGTTACCTGTATGTGtttaacacacaaaatacatgCCACTACTGAGTGAGATCCTGTACAAAGATGTTGGTAAAACCTGGAATTCAACTAAAACTGAGTGTTCCCactt

Function

symbol description
foxred2 Predicted to enable flavin adenine dinucleotide binding activity. Predicted to be involved in ubiquitin-dependent ERAD pathway. Predicted to be located in endoplasmic reticulum. Predicted to be active in endoplasmic reticulum lumen. Orthologous to human FOXRED2 (FAD dependent oxidoreductase domain containing 2).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0030433 ubiquitin-dependent ERAD pathway biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0005788 endoplasmic reticulum lumen cellular_component
GO:0016491 oxidoreductase activity molecular_function
GO:0050660 flavin adenine dinucleotide binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026916691.2 True 2569 mRNA 0.47 10 11648149 11657127
XM_034310072.1 False 2548 mRNA 0.48 10 11648276 11657127

Neighbor

gene id symbol gene type direction distance location
mcm5 mcm5,LOC107703892,LOC107670920 coding upstream 6092 11635325 ~ 11642057 (+)
gcat gcat,LOC107703894 coding upstream 14476 11626282 ~ 11633673 (+)
si:ch73-281f12.4 LOC108278921 coding upstream 46737 11578560 ~ 11601412 (+)
unm_sa1261 unm_sa1261,LOC108274299,LOC108432226,LOC107726818,LOC107573384,LOC107674909,LOC107717497 coding upstream 87320 11538334 ~ 11560829 (+)
LOC113528662 NA coding upstream 110984 11537047 ~ 11537165 (+)
ankrd54 ankrd54,LOC107728844,LOC107563363 coding downstream 402 11657529 ~ 11662120 (+)
hmgxb4a hmgxb4 coding downstream 5094 11662221 ~ 11671601 (+)
si:dkeyp-69e1.8 LOC108278349 coding downstream 14579 11671706 ~ 11677461 (+)
s1pr5a s1pr5a,LOC108260797,LOC108432217 coding downstream 82493 11739620 ~ 11743073 (+)
rfx1a LOC108260824,LOC108432209 coding downstream 172916 11830043 ~ 11850336 (+)
G209392 NA non-coding upstream 13668 11633912 ~ 11634481 (+)
G209390 NA non-coding upstream 29915 11618035 ~ 11618234 (+)
LOC117598771 NA non-coding upstream 665856 10971721 ~ 10982293 (+)
G209069 tbl3,LOC107724722,LOC106601810 non-coding upstream 700608 10943255 ~ 10947541 (+)
G209067 NA non-coding upstream 715721 10932059 ~ 10932428 (+)
G209410 NA non-coding downstream 51601 11708728 ~ 11708936 (+)
LOC113528367 NA non-coding downstream 151134 11808261 ~ 11822910 (+)
G209775 NA non-coding downstream 362736 12019863 ~ 12021132 (+)
G209798 NA non-coding downstream 404442 12061569 ~ 12061782 (+)
G209863 NA non-coding downstream 476133 12133260 ~ 12133471 (+)
luc7l3 luc7l3,LOC107674472,LOC107726809,LOC107654661 other upstream 70326 11567119 ~ 11577823 (+)
cdc42ep4a LOC108256079,LOC108432235,LOC103033379 other upstream 260129 11280080 ~ 11388020 (+)
G208781 cacng4b,LOC108259704,LOC106606650,LOC107565862,LOC107691234,LOC106601773,LOC107724746,LOC107713946 other upstream 866690 10349402 ~ 10781459 (+)
rapgefl1 rapgefl1,LOC107717207,LOC107662398,LOC107740631,LOC107667751,LOC107585050,LOC106600822 other upstream 1660376 9944306 ~ 9987773 (+)
nupr1b nupr1,LOC108413333,LOC107660958,LOC107739393,LOC107567154,LOC100692788,LOC103393451 other upstream 2584736 9061563 ~ 9063413 (+)
tbc1d16 tbc1d16,LOC107559246,LOC107689993,LOC107670685,LOC107562324 other downstream 392280 12049407 ~ 12086058 (+)
LOC113528416 LOC108275780 other downstream 478142 12135269 ~ 12140371 (+)
arhgap17b LOC108279379,LOC108432202 other downstream 501576 12158703 ~ 12190070 (+)
ndufb10 ndufb10 other downstream 710439 12367566 ~ 12374372 (+)
znf653 znf653,LOC104961106,LOC107553636,LOC103393609 other downstream 1778254 13435381 ~ 13445686 (+)

Expression


Co-expression Network