slc4a1a (LOC108279353)


Basic Information

Item Value
gene id slc4a1a
gene name LOC108279353
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 8249885 ~ 8267638 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026916699.2
ACCATCACTCTCCTTTtcgatctatctatctttcttacACCCCCTGCACGGTTACTCCTGTCCTGGAAGACAGCGGGTTTTACAGTGCAGCTGCGGATCTCCACACTCCGAGACAATAAAGAACCGCCAGAAACACCTGGATCCAGgTTCCGTGTAATGTTTTTCTGagtttaggggaaaaaataataagaaggcaGAGCACAGGCCCTACTGATGGAAGCTGTTCTAAATTTTCCAGGGGACAATGACATGTCCTATGAGGATGCTGATTCACCTCCAGCCTCACCATTCAGCATGACTCTTCCTGAACATACAGGGAGTTATGACTTGGAGCAGAAGAGACAGGAGCAGCAGGAGGGGCAACCTCCTGAGAGCTACATCATCAATACACACCCAGATGCGGCCTGGAACACCAACACCAACGCCACCACCAGAGGTGACTCTCAGtcataTGTGGAGCTGAACGAGCTGGTGGGGGAAAAATGGCAGGAGACCGGTCGCTGGGTGGGGTATGAGGAAACATTCAATCCAACCACTGGGAAATGGGGTTCCTCACACATTTCCTGTCTCACTTTCAGAAGCCTTATTCAGCTCCGCAGGGTCATGAGCACAGCGGCAGTGCTGTTGGACCTGAGCGAAAAAGACTTCATAGTCATTGCTGAGAAGATCGTAGATGAACTTCTGGGAAAGAATGAGATTCGGGCCTCAGATCAGGGGACCTTGCTGAAGGCATTGTTAGAGAAGCGCAGTCAGGCTGGTGGCACTCAGGTTACCTCAGCAGGCATTGAGATGCAGACCTTCTCTGTCACCAAACAGAGAGACACATCTGATAATGTAGAGGCATCTATTGTGTTATCAGGTGCGGTGGACTCCCTACAGAAGCCGGTTGTGGCATTTGTGCGACTGCAAGATTCCGTGGTGATGGACGGGATTATGGAGGCTTCTGTGCCTGTGCGTTTTATATTTGTCCTGGCAGGCCCTGCTGAGAGCGGCATAGATTTCCACGAGAGCGGACGTGCCATGGGTACACTCCTGGCTGACTGGGTCTTCAGCTTGGAGGCCTATCTTGCCGATAGTGAAAAAGAGCTGAATAATGCTATTGCTGACTTCATGGACTGCAGCATTGTGATCCCACCCACTGAGATCCAGACCGAGACCATGCTCCAGCCAATCATCCGCTTCCAAAAGAAAATGCTACATGAAAGACTCCGCCCTGCTGACACCCGAATCCTACTTGGAGCAAAAGCTAAAGAGCCTGAGCAGCCATGGGATGATCCATTGGCTCGAACTGGATATCCATTTGGTGGAATGGTCAAGGACATCAAGCGTCGTTACCGCCATTACCTGAGTGACTTCATCGATGCCATAAATCCTCAGGTGCTTTCTGCCATAATTTTCATCTATTTTGCTGCCCTTTCTCCTGCTATCACCTTTGGAGGCCTTCTGGCGGATAAGACAAACAAATGGATGGGAGTGCCAGAGTTGATGATCTCCACTAGCATACAGGGAATCATTTTCTGCCTGTTTGCCGCCCAACCTGTGCTGGTCATCGGCTTCAGTGGGCCACTGCTGGTGTTTGAAGAGGCGTTCTATAATTTTTGTAATTCTCAGGGCTACGAGTACATTGTGGGTCGGGTATGGGTTGGAATGTGGCTGATCATCATTGTGTTGATTGTGGTAGCAGCAGAGGCTAGCTTCCTCGTCCGCTTCATCTCTCGTTTTACCCAAGAGATCTTCTCCATCCTTATCTCCCTCATTTTCATCTATGAAACTTTTTTCAAGCTTTACAAGATTTTCAAAGATTACCCTCTGAAAAACACTTCAGTTGCCAACAGCACAAACGGCAGCATGGCTCAGGACCACTACCCCAACACTGCCCTGCTCTCTATGTGCCTGATGTTGGGCTGCTTCTTCATTGCCTACTTCTTCCGTCGATTCAAGAATAGCATCTTCCTGCCAGGCCCTATTCGTCGCATGATTGGAGATTTCGGTGTGCCCATCGCCCTCCTTCTCATGGTTGTGGTTGACGTCAGTATTAAGGATGTTTACACGCAGAAATTGCAGGTTCCAAAGGGTCTGAATGTGTCCAAACCTGAGGAAAGAGGCTGGATTATCAACCCAATGGGACTAAAGGAAACATTCCCCACTTGGCTAATATTTGCCTGTGCCATTCCAGCCTTATTGGTTTTCATTCTCATCTTCCTCGAGTCCCAGATCACAACGCTGATTGTAAGTAAACCAGAGAGAAAGATGGTGAAGGGCTCCGGCTTCCATTTGGATTTGCTCCTCATAGTGATGATGGGTGGAATTGCCTCCATTTTTGGTTTCCCCTGGCTTAGTGCTACAACAGTGCGATCTGTCACCCATGCCAACGCCCTCACTGTCATGTCCAAAGGCCCTAAACCAGAGATCACTAAGGTGCTGGAGCAGAGGGTTAGTGGGATTATCGTGGCCACTTTAGTTGgtgCATCCATATTTATGGAGCCCGTCCTGACGTTGATTCCCATGTCAGCTCTGTTCGGCATCTTTCTCTACATGGGTGTTACTTCTCTAAGTGGTGTTCAGCTGTGGGATCGCATACAGCTATTGATCGTGCCCAAAAAGTACCACCCATCTCTTCCATACGCCACTCGAGTAAAAACCTGGAGAATGCACCTCTTCACCCTTATCCAACTGGTGTGTTTGGGCATCCTGTGGGCAGTGAAATCCACCGAAGCTTCGCTGGCCCTGCCGTTTGTCCTCATTCTTACTGTCCCTCTGCGTATTTTCATGTCTGGACGCCTCTTCACTACCACAGAGATGAAATGCTTGGATTCAGATGATGCCAAGGTGACATTTGAGGAGGAGCAGGGGGTGGATGTGTATGATGAGTGTCCCTTCTCATAAATGACTTCTAGCATTTCACTGAACCTGTGAGCTCAGGCATCATGCCTTAAACTCTGTCCAGTGCCTTCATTAAACTATCGCAAGAGTTATAGTGTGGAACCACAGGAACAGGACCCACAGTGTCAAAACCATCGCATAGTCAAGCTTTATCAACCTTTTTCTGGTTTGCAtgcacattttaatcatttcccACTACTGAGTAGATCCTCTATACCAGTTCATTTTTCTCCTAAGACTGTTTTGCTTTACTTTTTGAATTGTTagattttatattgtttttatcaTACAGAGTGCCCGAAAAGTCTCCATACGTAGGGGACTATGTAAGCCAGCACCACGTCAATTGTGctttcgtcagtggatgttcatggacgttTTGACAttagacattttgctaaaaagtgttaatttcccctatgtgtgGAGACTTTTGAGACACCCGTATGAAAGCCATTAGCTAATAGTGTTTAATAACTTCTTTTTTAAGCTCTATGCAAAAGCTTTTTTCTGTGCAGCATTTGAGATTAAATATAGTATTATGCCTATAATGTGTTTCTACATTGACAGTAGCTACAATATCAccctgtgtctttttttttttgattgattgatattTGTTTCAAATATCATATCTGTAAATTTCTTATTCCAGTCTAGCAGTTGCTGAATGATTGTTGTTGCAGTTTATGAGATCATGgatattttagaattttgagTGGGTTTGAATAGTGATGAATGTACATtctgttttattgttatattttttttttatatttaatcttGTGTTGCAATTCATGTAACTATTAAAATTCTATTACTAAAATAATCTTATTGCCAATACAGACCTGGAGAAAATCTTTCATTTGCAGATATTATCTTTCATTAGCAGAGGTATTATagcaaaatgaaatataatggTAATTTTTTAGACAAATATTAGGGGGGAACTGAAGCACAAATgtgaatttattaaagaagtaaGTGAATTAAAAGTAATAAACTGTGTCATTAAAACAAgctaaaa
>XR_003402917.2
ACCATCACTCTCCTTTtcgatctatctatctttcttacACCCCCTGCACGGTTACTCCTGTCCTGGAAGACAGCGGGTTTTACAGTGCAGCTGCGGATCTCCACACTCCGAGACAATAAAGAACCGCCAGAAACACCTGGATCCAGgTTCCGTGTAATGTTTTTCTGagtttaggggaaaaaataataagaaggcaGAGCACAGGCCCTACTGATGGAAGCTGTTCTAAATTTTCCAGGGGACAATGACATGTCCTATGAGGATGCTGATTCACCTCCAGCCTCACCATTCAGCATGACTCTTCCTGAACATACAGGGAGTTATGACTTGGAGCAGAAGAGACAGGAGCAGCAGGAGGGGCAACCTCCTGAGAGCTACATCATCAATACACACCCAGATGCGGCCTGGAACACCAACACCAACGCCACCACCAGAGGTGACTCTCAGtcataTGTGGAGCTGAACGAGCTGGTGGGGGAAAAATGGCAGGAGACCGGTCGCTGGGTGGGGTATGAGGAAACATTCAATCCAACCACTGGGAAATGGGGTTCCTCACACATTTCCTGTCTCACTTTCAGAAGCCTTATTCAGCTCCGCAGGGTCATGAGCACAGCGGCAGTGCTGTTGGACCTGAGCGAAAAAGACTTCATAGTCATTGCTGAGAAGATCGTAGATGAACTTCTGGGAAAGAATGAGATTCGGGCCTCAGATCAGGGGACCTTGCTGAAGGCATTGTTAGAGAAGCGCAGTCAGGCTGGTGGCACTCAGGTTACCTCAGCAGGCATTGAGATGCAGACCTTCTCTGTCACCAAACAGAGAGACACATCTGATAATGTAGAGGCATCTATTGTGTTATCAGGTGCGGTGGACTCCCTACAGAAGCCGGTTGTGGCATTTGTGCGACTGCAAGATTCCGTGGTGATGGACGGGATTATGGAGGCTTCTGTGCCTGTGCGTTTTATATTTGTCCTGGCAGGCCCTGCTGAGAGCGGCATAGATTTCCACGAGAGCGGACGTGCCATGGGTACACTCCTGGCTGACTGGGTCTTCAGCTTGGAGGCCTATCTTGCCGATAGTGAAAAAGAGCTGAATAATGCTATTGCTGACTTCATGGACTGCAGCATTGTGATCCCACCCACTGAGATCCAGACCGAGACCATGCTCCAGCCAATCATCCGCTTCCAAAAGAAAATGCTACATGAAAGACTCCGCCCTGCTGACACCCGAATCCTACTTGGAGCAAAAGCTAAAGAGCCTGAGCAGCCATGGGATGATCCATTGGCTCGAACTGGATATCCATTTGGTGGAATGGTCAAGGACATCAAGCGTCGTTACCGCCATTACCTGAGTGACTTCATCGATGCCATAAATCCTCAGGTGCTTTCTGCCATAATTTTCATCTATTTTGCTGCCCTTTCTCCTGCTATCACCTTTGGAGGCCTTCTGGCGGATAAGACAAACAAATGGATGGGAGTGCCAGAGTTGATGATCTCCACTAGCATACAGGGAATCATTTTCTGCCTGTTTGCCGCCCAACCTGTGCTGGTCATCGGCTTCAGTGGGCCACTGCTGGTGTTTGAAGAGGCGTTCTATAATTTTTGTAATTCTCAGGGCTACGAGTACATTGTGGGTCGGGTATGGGTTGGAATGTGGCTGATCATCATTGTGTTGATTGTGGTAGCAGCAGAGGCTAGCTTCCTCGTCCGCTTCATCTCTCGTTTTACCCAAGAGATCTTCTCCATCCTTATCTCCCTCATTTTCATCTATGAAACTTTTTTCAAGCTTTACAAGATTTTCAAAGATTACCCTCTGAAAAACACTTCAGTTGCCAACAGCACAAACGGCAGCATGGCTCAGGACCACTACCCCAACACTGCCCTGCTCTCTATGTGCCTGATGTTGGGCTGCTTCTTCATTGCCTACTTCTTCCGTCGATTCAAGAATAGCATCTTCCTGCCAGGCCCTATTCGTCGCATGATTGGAGATTTCGGTGTGCCCATCGCCCTCCTTCTCATGGTTGTGGTTGACGTCAGTATTAAGGATGTTTACACGCAGAAATTGCAGGTTCCAAAGGGTCTGAATGTGTCCAAACCTGAGGAAAGAGGCTGGATTATCAACCCAATGGGACTAAAGGAAACATTCCCCACTTGGCTAATATTTGCCTGTGCCATTCCAGCCTTATTGGTTTTCATTCTCATCTTCCTCGAGTCCCAGATCACAACGCTGATTGTAAGTAAACCAGAGAGAAAGATGGTGAAGGGCTCCGGCTTCCATTTGGATTTGCTCCTCATAGTGATGATGGGTGGAATTGCCTCCATTTTTGGTTTCCCCTGGCTTAGTGCTACAACAGTGCGATCTGTCACCCATGCCAACGCCCTCACTGTCATGTCCAAAGGCCCTAAACCAGAGATCACTAAGGTGCTGGAGCAGAGGGTTAGTGGGATTATCGTGGCCACTTTAGTTGgtgCATCCATATTTATGGAGCCCGTCCTGACGTTGATTCCCATGTCAGCTCTGTTCGGCATCTTTCTCTACATGGGTGTTACTTCTCTAAGTGGTGTTCAGCTGTGGGATCGCATACAGCTATTGATCGTGCCCAAAAAGTACCACCCATCTCTTCCATACGCCACTCGAGTAAAACCTGGAGAATGCACCTCTTCACCCTTATCCAACTGGTGTGTTTGGGCATCCTGTGGGCAGTGAAATCCACCGAAGCTTCGCTGGCCCTGCCGTTTGTCCTCATTCTTACTGTCCCTCTGCGTATTTTCATGTCTGGACGCCTCTTCACTACCACAGAGATGAAATGCTTGGATTCAGATGATGCCAAGGTGACATTTGAGGAGGAGCAGGGGGTGGATGTGTATGATGAGTGTCCCTTCTCATAAATGACTTCTAGCATTTCACTGAACCTGTGAGCTCAGGCATCATGCCTTAAACTCTGTCCAGTGCCTTCATTAAACTATCGCAAGAGTTATAGTGTGGAACCACAGGAACAGGACCCACAGTGTCAAAACCATCGCATAGTCAAGCTTTATCAACCTTTTTCTGGTTTGCAtgcacattttaatcatttcccACTACTGAGTAGATCCTCTATACCAGTTCATTTTTCTCCTAAGACTGTTTTGCTTTACTTTTTGAATTGTTagattttatattgtttttatcaTACAGAGTGCCCGAAAAGTCTCCATACGTAGGGGACTATGTAAGCCAGCACCACGTCAATTGTGctttcgtcagtggatgttcatggacgttTTGACAttagacattttgctaaaaagtgttaatttcccctatgtgtgGAGACTTTTGAGACACCCGTATGAAAGCCATTAGCTAATAGTGTTTAATAACTTCTTTTTTAAGCTCTATGCAAAAGCTTTTTTCTGTGCAGCATTTGAGATTAAATATAGTATTATGCCTATAATGTGTTTCTACATTGACAGTAGCTACAATATCAccctgtgtctttttttttttgattgattgatattTGTTTCAAATATCATATCTGTAAATTTCTTATTCCAGTCTAGCAGTTGCTGAATGATTGTTGTTGCAGTTTATGAGATCATGgatattttagaattttgagTGGGTTTGAATAGTGATGAATGTACATtctgttttattgttatattttttttttatatttaatcttGTGTTGCAATTCATGTAACTATTAAAATTCTATTACTAAAATAATCTTATTGCCAATACAGACCTGGAGAAAATCTTTCATTTGCAGATATTATCTTTCATTAGCAGAGGTATTATagcaaaatgaaatataatggTAATTTTTTAGACAAATATTAGGGGGGAACTGAAGCACAAATgtgaatttattaaagaagtaaGTGAATTAAAAGTAATAAACTGTGTCATTAAAACAAgctaaaa

Function

NR:

description
PREDICTED: LOW QUALITY PROTEIN: band 3 anion transport protein

GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0006820 anion transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005452 inorganic anion exchanger activity molecular_function

KEGG:

id description
K24194 BOR; boron transporter

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026916699.2 True 3910 mRNA 0.45 21 8249885 8267638
XR_003402917.2 False 3909 misc_RNA 0.45 21 8249885 8267638

Neighbor

gene id symbol gene type direction distance location
ubtf ubtf,LOC102797579,LOC107660581 coding downstream 1096 8238150 ~ 8248789 (-)
atxn7l3 atxn7l3,LOC108276986,LOC107571925,LOC107660606,LOC107566928 coding downstream 13263 8226297 ~ 8236622 (-)
si:busm1-163l24.3 LOC108276929 coding downstream 40109 8204060 ~ 8209776 (-)
si:busm1-163l24.4 LOC108277007 coding downstream 46532 8201765 ~ 8203353 (-)
rnd2 rnd2,LOC108273890,LOC108413538,LOC107708553,LOC107552458,LOC107754744,LOC107567027,LOC103142158 coding downstream 94611 8130367 ~ 8155274 (-)
spop spop,LOC107754841,LOC100710366 coding upstream 299133 8566771 ~ 8660121 (-)
slc35b1 slc35b1,LOC107590797,LOC107684645 coding upstream 448686 8716324 ~ 8728598 (-)
fam117aa fam117a,LOC108413398,LOC101073443 coding upstream 462327 8729965 ~ 8745043 (-)
rundc3aa rundc3a,LOC108259691,LOC108413389,LOC107590794,LOC107684642 coding upstream 480071 8747709 ~ 8762587 (-)
tlcd3ba fam57b,fam57ba,LOC108410608,LOC107678875,LOC107684641,LOC107710888,LOC107754912 coding upstream 497041 8764679 ~ 8779068 (-)
G207650 NA non-coding downstream 49107 8176358 ~ 8200778 (-)
G207653 mrc2 non-coding downstream 135311 8110658 ~ 8114574 (-)
G207571 NA non-coding downstream 213037 8033282 ~ 8036848 (-)
G207565 NA non-coding downstream 220436 8029206 ~ 8029449 (-)
G207540 NA non-coding downstream 301714 7943678 ~ 7948171 (-)
G207732 NA non-coding upstream 86072 8353710 ~ 8358074 (-)
G207793 LOC107737118,LOC107558774 non-coding upstream 164360 8431998 ~ 8432261 (-)
G207860 NA non-coding upstream 225177 8492815 ~ 8493041 (-)
G207895 NA non-coding upstream 266865 8534503 ~ 8534712 (-)
G208016 NA non-coding upstream 306997 8574635 ~ 8649363 (-)
crhr1 crhr1,LOC108261365,LOC107662410,LOC108413653 other downstream 544393 7559767 ~ 7705492 (-)
natd1 natd1,LOC107661164,LOC107568532,LOC107689058 other downstream 818773 7425717 ~ 7431112 (-)
G207231 spsb3 other downstream 927923 7318603 ~ 7321962 (-)
stat5a sta5b,stat5,LOC108279147,LOC108444239,LOC105013349 other downstream 1523720 6646058 ~ 6726165 (-)
G206604 NA other downstream 2054889 6126910 ~ 6194996 (-)
selenow2a mien1,sepw2a,LOC107566883,LOC107755209 other upstream 12129 8279767 ~ 8289808 (-)
LOC113528661 NA other upstream 16836 8284474 ~ 8284592 (-)
ndufa4l ndufa4l,LOC108260900,LOC108413413,LOC107684646,LOC107590798,LOC103026352,LOC107582867 other upstream 440316 8707954 ~ 8713318 (-)
LOC113527952 LOC108260010,LOC108274064 other upstream 845328 9112966 ~ 9142871 (-)
dnal4a dnal4,LOC108261343,LOC108412416,LOC108436609,LOC106591471 other upstream 928858 9196496 ~ 9203640 (-)

Expression


Co-expression Network