arhgdia (arhgdia,LOC107654583,LOC107665665)


Basic Information

Item Value
gene id arhgdia
gene name arhgdia,LOC107654583,LOC107665665
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 13960501 ~ 13985023 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026916721.2
GCGGGCATGTGCGCGCGCGCTCCGGTATTCCCGGAAGCGGGTGGCTGTCTGACATCGCCGCTCCCTCCTCGCGCCATTGAACAGTCAGTTGAAGCTCGCGCTAGCCTATTGACTCGCACAGTAGCCGCATCTCTACGCAGTAGATCATGGCAGAGCATGAACCCACTCCGGAGCAGCTAGCAGCCATCGCTGCCGAGAACGAGGAGGGCGAGGTTGTGAACTACAAGCCGCCAGCGCAGAAGAGCCTGCAGGAGATCCAGGAACTGGACAAGGACGATGAAAGCCTGCGCAAGTACAAAGAGGCTTTGCTCGGCTCAGCCGCCGTGGCCATAGATCCCAGCGCTCCCAACGTCCAAGTGACACGGCTAACTTTAATGTGCGACACGGCCCCTGCTCCTCTGACCCTTGACCTTCAAGGAGATCTGGAGAGCTTCAAAAAGCAGTCGTTTATACTTAAAGAAGGAGTGGAGTACAGGATAAAGATCAGCTTCAAGGTAAACAAGGAGATCGTCTCAGGACTGAAGTATGTACAACAGACCTTTAGGAAAGGGGTGAAGCTTGACAAGTCTGACTACATGGTGGGCAGTTATGGGCCTCGGCCAACCGAGTATGAGTTCCTCACCCCACTAGAGGAGGCGCCGAAGGGCATGCTGGCCCGCGGCACCTACAACATAAAGTCCAAGTTTACTGACGATGACAAGCACGACCACCTGTCCTGGGAGTGGAACCTCAACATCAAGAAGGACTGGAAAGACTAAGCTGCTCCCGAACCTCAGCTGCTTTTCCTCTCCATCATTTTCcattcttcctccctctctttcctccCCATTTCCTTCATAAGTACTATCATCATGGAATAACTGGTtaatcaacaaacaaaaaggTTCTCACTCCGTCCATCTTCCTACCATTTGTCATTCTTTGCAATTGCTCCTCCCCTTCACTCCCTTCCAATGAATGAGTATTgaggattttcatgaaaaatatatatgtgaaaacaaacaaaaatgtgcacaatccaaattttgtgtttttgttttgtttgtatataaaagtacaaaaaaagagaggaaaaaatgttcaaaaacatgAATGCTTTTGACATGGCTGTTGTTGGTAATCTTCACATCCCCCATGCTTATCCTTCTGTGTCTTTTACCCTACCCATGTGTGTGTCCTGCGTGCAGATTTCCTTAcattccttttctctttcttctttttttttttttaatgaccatgATCTGCCTTGATAAAAGTAATGGGAAATGGTGCCGCTTAATAATGTTTTGCCACTGGCAGAGCTAATGGCTTTCCTCAACCCTGTACATGTGGGAAAGTGATGTGTGTACCTTTCTGAGATAATCTGTGTGCAGTGGTTGGCGTGGCTGGTTATAGCTGACATTGAAAATCTGTTCCTAGCAGGGATGTGTTTGCATGTGGGTAATGTAGTATTTCAAAGATGTAGCTGTCTTTATTGCAAATGTGACCTCCTATCCACTCGAGGAGCTCCACTGATCAGCCTTCCTGGTAGTGGCCTGTGTGTTttcttgacctttttttttttttttttttttttaacatgtggCCTTAAGAAGTTATTGCTGTAGCACGATGTTGAGGAAGTTGTTGCCTTTTGTGTatcagttttaaatattatcaaatcATTCCCCCATGGCTGGAGCCAAAGGTGCTCGCTCTGCTTACTGCTGCTTCCTCTTGGGAAGGATCGTTTCATCTGGTGCCTCATCCACTTGGTTTGATTCAGGATTCAAAATATGAAGGCCAGTAGAAGTAGGTGAATTATGCTGGAAAAAACCAACTCAATTTTGGCCCCCCTGTATCTTGCTTTATTCATTTCTAGTTTCTGTCCAGTGAAATCCTCTCTCCCAAATGTGTCCATTTCTAAAGAGGGTAAGTGTTTACTTTGTGAAATGTGCCCTTTGCATTGTGGTCTACGCAAGTTGTCATTGAGTGCTAAAGAGATTTCTCGAAGCAGAAAGGGCTGTTTTCGCTTGCAGACCTCCTCTATTTAAATGCTTAAGCTAAAAAGTTCAACATCACTGGCTGTGCCTCCACTATTTACCATCACAAGCTGCTTTATGAAGACCTctgaaacataaacacaaaactcTAACTGAGGTGTGCATAGGTGAGATGGACAGTATTGGTCTAGGGGGGGTGTTCTTTCAATCTGGATTCAGTGTAGCCGTCTTTCTCTTCAGTCCTCCAGTGTAGCCGTTTTCACCTCAAGGTTTAATCTCAGAATAGCGAATGCGTCCACTATTGTACACACCTTTTCATTGACAACGTTGCCTGTAATGTTGCGTGGAGATTTTTAGCACTTGCTTCTTCCTTTCATTTGGTCTCTATGTACTTATGTCATTCTATCACTGTGGAAGGAGATTACTGTTCATCTGTGTCAACATTAAAAGTGTTCAAAATGGAA

Function

symbol description
arhgdia Predicted to enable Rho GDP-dissociation inhibitor activity. Acts upstream of or within small GTPase mediated signal transduction. Predicted to be located in cytoplasm. Predicted to be active in cytosol and membrane. Is expressed in retinal ganglion cell layer. Used to study nephrotic syndrome. Human ortholog(s) of this gene implicated in nephrotic syndrome type 8. Orthologous to human ARHGDIA (Rho GDP dissociation inhibitor alpha).

NR:

description
PREDICTED: rho GDP-dissociation inhibitor 1

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005737 cytoplasm cellular_component
GO:0005094 Rho GDP-dissociation inhibitor activity molecular_function

KEGG:

id description
K12462 ARHGDI, RHOGDI; Rho GDP-dissociation inhibitor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026916721.2 True 2446 mRNA 0.45 6 13960501 13985023

Neighbor

gene id symbol gene type direction distance location
recql5 recql5 coding downstream 22062 13904158 ~ 13938439 (-)
zgc:112183 rab37,zgc:112183,LOC108278300,LOC107665712,LOC107654586,LOC106606976,LOC105012908 coding downstream 126616 13815726 ~ 13833885 (-)
LOC113527894 LOC108278278,LOC108412261 coding downstream 151058 13763895 ~ 13809443 (-)
LOC113528466 LOC108276218,LOC108441001 coding downstream 245046 13714400 ~ 13715455 (-)
antkmt fam173a,LOC108276247 coding downstream 257974 13696613 ~ 13702527 (-)
alyref alyref coding upstream 1699 13986722 ~ 13989892 (-)
LOC113528592 LOC108256535,LOC108435873 coding upstream 198514 14183537 ~ 14202558 (-)
prpsap1 LOC105013149,LOC108255900,LOC106606986,LOC103375364,LOC101163819,LOC100700674,LOC108435871,LOC107731682 coding upstream 394012 14379035 ~ 14391094 (-)
LOC113527937 LOC108255917 coding upstream 409206 14394229 ~ 14410677 (-)
LOC113528545 LOC108255936,LOC103153053 coding upstream 429890 14414913 ~ 14432720 (-)
G210915 NA non-coding downstream 90928 13869199 ~ 13869573 (-)
G210877 NA non-coding downstream 136208 13758526 ~ 13824293 (-)
G210888 NA non-coding downstream 173990 13732419 ~ 13786511 (-)
LOC113527951 NA non-coding downstream 212502 13740069 ~ 13747999 (-)
G210886 NA non-coding downstream 233672 13723551 ~ 13726829 (-)
G210952 NA non-coding upstream 150071 14135094 ~ 14135304 (-)
G210973 NA non-coding upstream 231650 14216673 ~ 14216872 (-)
G210997 mgat5b,LOC108274344,LOC108435872 non-coding upstream 309284 14294307 ~ 14298198 (-)
G211003 NA non-coding upstream 344563 14329586 ~ 14329920 (-)
G211054 LOC108275544 non-coding upstream 476769 14461792 ~ 14462409 (-)
xylt2 xylt2,LOC107748866,LOC107665700,LOC107654585 other downstream 89370 13841166 ~ 13871131 (-)
LOC117598755 NA other downstream 561276 13395466 ~ 13399225 (-)
elof1 elof1,LOC103393660,LOC100703874,LOC106589640,LOC103384163 other downstream 565044 13390616 ~ 13395457 (-)
tom1 LOC108260160 other downstream 1401288 12546333 ~ 12559213 (-)
msrb1a msrb1 other downstream 1621232 12333854 ~ 12339269 (-)
mcrip1 mcrip1,fam195b,LOC107654575 other upstream 8853 13993876 ~ 14001037 (-)
LOC113528401 ppp1r27a,LOC108279187,LOC107748880,LOC107558871,LOC107654574,LOC107665625,LOC107548727,LOC107743019 other upstream 19146 14004169 ~ 14006512 (-)
pecam1 LOC108279165 other upstream 32592 14017615 ~ 14029641 (-)
G211151 usp36 other upstream 535254 14520277 ~ 14520975 (-)
LOC113528445 LOC108274755 other upstream 693727 14678750 ~ 14690132 (-)

Expression


Co-expression Network