hoxb9a (hoxb9,hoxb9a,LOC107662432,LOC107717219,LOC107585091)


Basic Information

Item Value
gene id hoxb9a
gene name hoxb9,hoxb9a,LOC107662432,LOC107717219,LOC107585091
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 9737003 ~ 9741333 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026916726.2
AGGCTCGCGAAAAAAGACTGACCAATCATTTTGCTCGAAGCACACAGCATAGCAGCTCGACTCCACTTTGTTGGAGAGCGAGTACAGAGAGCATCTTGGATAGGGGAAAGCCCAGTTCTATGGTATATGGTTTCCCTTCAATGAACCGCACATAGTATAATGTCCGAGAATGTCCATTTCTGGACCTCTAAGCAACTACTATGTCGATTCCATCATAAGTCATGAAGGGGAAGATCCGAGCGCTGCCCGATTCTCCAATGTACAGTATTCCAACACTAGGCAACCGGGAACCGGGGAACATCATGAATTCCCTTCGTGCAGCTTTCAGCCCAAGCCTCCTGTGTTTAGTTCGTCATGGAGTCCTTTCAGTCCCCACACGCCCAACAGCTTACCGGCGGTCTACCATCCCTATATCCCAGCGCAGCCCGTGCCATCGACGGACACCCGGTACCTTCGCACATGGCTCGACTGTGCACCGAGAACCGAGCCACTGGACATCCAGAGCCAAGTCAAGATGGAGCCACCCCTGGGACACCTCGAGGAGCCCCCGAAGATTGGAGTACAGCACGAGTATGTTTTGGAATCCTCCTCAGCTCGGGAGATAAACCCCGGCCACGGCTCTGGATTTGAAGACAGCAAAGATATTTGTGACGGCGGTGAAGACAAAGAGGGACCGGATCAAAACGATCCATCAGCCAACTGGTTACACGCTCGCTCGTCACGGAAAAAGCGATGTCCATACACTAAGTATCAAACCCTGGAGCTCGAGAAGGAATTCCTCTTCAACATGTATCTTACCCGGGACCGGCGACACGAGGTAGCGCGCTTGCTGAACTTGACGGAGCGGCAAGTTAAAATTTGGTTCCAAAACCGAaggatgaaaatgaagaaaatgaataaGGACCAGTCCAAGGAATAAATGGACAAGTGTGGGTGCCCATCCTTTACCCCTTTTATCACAATTATGCTGACCTCTGGACAGTAATACAAGATGTTTGCAGCCTGTGctacacattttttatattctgaGATGCAGATCAACACTAAAACCTGAGTATTCTTTTTAGAAAGCTACTTGAAGAAGGGCAAGAACACTAGTAACCAACTATAAAACTACGTCAAAAGAAAATCATGTAATATACATGAGTAGGCTGTATACCTACTCCTTGTCCTCTGTTTTGAATTTCCTTTCCACTTTActttataaacagaaatataagtACAGGTACttgcatatttatgttttaattgaAAGAAACTTTACTTTGTAGACATTTTGTGgacaatgttattttattcaatGGCAATAAGTGCGGTTACAACGTATTCCTataacaaaactgaaaaattattattattattattattattattattattattattattattattattattattattattatttcttgtggtaagggaaattattttaattgtgcCGTGACAAATATTCGGATATGCATTCCTTAATGGATAAAATGCTTCGAGGTTACCTTTTGCATTTGTTAAATTTTAATCAAGGATACTGATACTGGAAGAAAATTGGTCTTTCCTCTGAATATGTCTCCATGAATAAGTTTAAATCTATAGCAGCCTAATTCGTCTTGCTTTTCTTAATGGTTTGGATCGACCTAGAGTCATACATTGAAGGATTTGAAGAATAAACTGTGTTGCAGACTTTGTAGTAGATAATGCcatattaatgtaatgtaatattccAAGTTTTCGACGTGAAGCAACTATATAAAGCAAGGCTTTTTTAAAGCAAGGTCTAGCAACATTTAAACCTTAATTGTATACTACGTTACTCCGTTTAATCTTAATTGTTGCCCCAGTTATCAAATGAAGGAGGAATTAACTTATAGACTGTATCTGctggatgtgtgtatatgtatgtagcTAGCTTGTGAGTAACATTTCGGTTTTAAACTAGCAGTGGTTGTAAAAGTTTACATGCTTTAGCGCATGCCTTGTAAAGTTTTAGTTACCTTTTACTTGATTTTGATATTAGGTAGTACAATGCTAAGCTCTTCCTTGTGTAGTATTAGAATGATAGTTATAATTTATTCCAAATGttattgcttttcttttcagtggaatgttttttttttacattgtataAAAAGAGGAGATTTTATAGCCTACTTAAATAAGcaaatgttctttctttttttcagacacTGTTTACATATTGTTGTCCATAAGTCTTTGAGATCTGTGTTAACACAAAAGTATTATGTTGTAAAGTATACGTTTGCTCAACATTGCATTGTTTTGCTTGTGAAGAAATAGTCTCCGAATGGACCTTTCTGTAGTCGCGTGGGCGTCTGTCTTCAACTTCCCTTGAGGTGTGGAATTTCTCCAGTTTTCCTCAAACGGTGTCACAACCACCGacaaactgacagacagacacagacccATATTACAAGTTTACACGGATCACTGTCTGAGTTCCTCTCATTGGCGTCTATAactgatgtatattttttacaAAGGATAAACCAATActccacattcattaacataaaccGTTCCTActgaataaacacagaaaacctA

Function

symbol description
hoxb9a Predicted to enable DNA-binding transcription factor activity and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in embryonic skeletal system morphogenesis; regionalization; and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated and transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in CNS interneuron; paraxial mesoderm; and spinal cord neural tube. Orthologous to human HOXB9 (homeobox B9).
hoxb9 Enables sequence-specific double-stranded DNA binding activity. Involved in cell chemotaxis. Located in nucleoplasm.

NR:

description
PREDICTED: homeobox protein Hox-B9

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007275 multicellular organism development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09294 HOX_9; homeobox protein HoxB/C/D9

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026916726.2 True 2565 mRNA 0.39 2 9737003 9741333

Neighbor

gene id symbol gene type direction distance location
hoxb7a hoxb7 coding downstream 8149 9724361 ~ 9728854 (-)
hoxb3a hoxb3,hoxb3a,LOC108278472,LOC107687775,LOC107740615,LOC107582888 coding downstream 14366 9675762 ~ 9722637 (-)
hoxb6a hoxb6a,LOC108278545,LOC108413127,LOC107585042,LOC107582892,LOC107662387 coding downstream 19534 9715010 ~ 9717469 (-)
hoxb5a hoxb5a,LOC108278507,LOC108413114,LOC107717200,LOC107687777,LOC107662384 coding downstream 23261 9711139 ~ 9713742 (-)
hoxb4a hoxb4,hoxb4a,LOC107740620,LOC107585041 coding downstream 34579 9698031 ~ 9702424 (-)
hoxb13a hoxb13,hoxb13a,hoxb13aa,LOC107687788,LOC107662424,LOC107585093,LOC107740673,LOC107582955 coding upstream 26534 9767867 ~ 9769918 (-)
nr1d1 nr1d1 coding upstream 155533 9896866 ~ 9904394 (-)
ppp1r9ba ppp1r9b,LOC108412948 coding upstream 246783 9988116 ~ 10033085 (-)
col1a1a col1a1,LOC108279263,LOC107585052,LOC107740634 coding upstream 300848 10042181 ~ 10061921 (-)
nags nags coding upstream 381053 10122386 ~ 10134023 (-)
G208391 NA non-coding downstream 231253 9494623 ~ 9505750 (-)
LOC117598997 NA non-coding downstream 290899 9441986 ~ 9446104 (-)
G208189 NA non-coding downstream 633877 9102911 ~ 9103126 (-)
G208158 nupr1,LOC108413333,LOC107660958,LOC107739393,LOC107567154,LOC100692788,LOC103393451 non-coding downstream 673496 9061580 ~ 9063507 (-)
G208153 NA non-coding downstream 706025 9030525 ~ 9030978 (-)
G208473 NA non-coding upstream 5163 9746496 ~ 9748039 (-)
LOC117599011 NA non-coding upstream 88294 9829627 ~ 9927942 (-)
LOC113528446 NA non-coding upstream 95917 9837250 ~ 9838412 (-)
G208613 msl1 non-coding upstream 173574 9914907 ~ 9917529 (-)
G208649 NA non-coding upstream 322644 10063977 ~ 10066356 (-)
hoxb8a hoxb8a,LOC108278530,LOC108413053,LOC103044850,LOC107582957,LOC107662386,LOC107585089 other downstream 4437 9729851 ~ 9732566 (-)
copz2 copz2,LOC108260256,LOC108413159,LOC107740614,LOC107662379,LOC107710054,LOC107585036,LOC107687783,LOC105013247,LOC108246742,LOC106527321,LOC106912034 other downstream 262525 9464331 ~ 9474478 (-)
prr15la LOC108273894,LOC108412372 other downstream 317419 9409804 ~ 9419584 (-)
dnal4a dnal4,LOC108261343,LOC108412416,LOC108436609,LOC106591471 other downstream 533363 9196496 ~ 9203640 (-)
LOC113527952 LOC108260010,LOC108274064 other downstream 594132 9112966 ~ 9142871 (-)
tecpr1b LOC108276900 other upstream 709391 10450724 ~ 10470518 (-)
hmox1a hmox1,LOC108432221 other upstream 1900824 11642157 ~ 11647997 (-)
zgc:162612 foxd1,LOC108278341,LOC107757501 other upstream 1958516 11699849 ~ 11701172 (-)
LOC113528332 hs3st6,LOC102795972 other upstream 2556443 12297776 ~ 12315498 (-)
msrb1a msrb1 other upstream 2592521 12333854 ~ 12339269 (-)

Expression


Co-expression Network