ccdc137


Basic Information

Item Value
gene id ccdc137
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 17749174 ~ 17767669 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026916729.2
GGGGACGCAGTCTGAGTAACCAGTCATAAAGCACAAAATATGCTAGGGGACCCGGATCAGGAAACCACACTGCGAAGGAAGAAGTTGCTAACATGGTCAAAAACAGTCGAACTAAAGCTTCAAAATTCTGTCAGCAAAGAGAAGAAGGGAATTCAAGCAAGAAGTTGAAGAAGAAAGATGATGTGAAACCTCGACTGGAAGTACATCTGGAGCAGATACCTTTTAAACTGCGTGCAATTATGAAAAgtagagagaaaatgaatatgGGATCCAATCAACTGAAGAAAACCATGAGAGCATGTAAGCCCAAAGTACAGATGGAAATCTGTGAGCAGGAACACATCAGAGTTCCACACTTTCGGAGGGGAAAGCAAGAGTCAGAGACAGCTTACCTGCGACGCATGTCACAAGAAACacagcatgttttctttctcaccAAAAACCAGCCAGAGAGACATCCTGAACGACACCTGGAGGAGAAGGCATCAACTTCAAAcgaagagataaaaaaaaaattGTTTAACAGAGGAAGATGGCTGCATAAGAAAAAAGTCAAGCCACAGGAGTATGTGGAAAACAAGATATTTGAAGATAAAATACAGTTTGGAGAGGTTGCATTAGCACCTCCATCACTGACTGTCAAACCAAAGAAGGCTCCTGTGAAAACTCAGAGAGCATCCAACAGCCTTCTTCTGAGTTCTATACTTGGCCACACTGATGTCTCAACAGTTAGCCCATCTATGGCAAGGCAGAAGATAATTGAGGAAGAACATGAAAGGGTGGTCCACGCTTACCGCCAACTGAAGAGGCAGACACGAGCAAAATCAGCAGCAAAAGTCAGGGATTAACACATTCCTAAACCCTCAATGATATCTCCAggaaattgttaaaaaaaaaattgcactccTGTGAATTATCATTGTATAGTAAGAATGTTGCATTTCAGTTGATGGCACTCCACATGTTTGGCGGTTGTGCGTTGAAACATTACCATTTTCAATGTAggcctcatttttttttttccctccttcagGTGAATGGAAAA

Function

NR:

description
coiled-coil domain-containing protein 137

GO:

id name namespace
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0006518 peptide metabolic process biological_process
GO:0005759 mitochondrial matrix cellular_component
GO:0005761 mitochondrial ribosome cellular_component
GO:0000313 organellar ribosome cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0044444 obsolete cytoplasmic part cellular_component
GO:0005840 ribosome cellular_component
GO:0098798 mitochondrial protein-containing complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005739 mitochondrion cellular_component
GO:0051082 unfolded protein binding molecular_function

KEGG:

id description
ko03010 Ribosome

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026916729.2 True 1045 mRNA 0.42 6 17749174 17767669

Neighbor

gene id symbol gene type direction distance location
trap1 trap1 coding upstream 407099 17319742 ~ 17342075 (+)
tfap4 tfap4,LOC107695712,LOC107601578,LOC107661646,LOC107553667 coding upstream 663419 17067237 ~ 17085755 (+)
LOC117595691 NA coding upstream 750480 16997366 ~ 16998694 (+)
LOC113528633 NA coding upstream 751522 16995855 ~ 16997652 (+)
LOC113528175 pam16,LOC108276516,LOC108431934,LOC107601580,LOC107553663,LOC107715621,LOC107718618,LOC106601835,LOC107695711,LOC105924796 coding upstream 777407 16832403 ~ 16971767 (+)
LOC113528388 myadml2,LOC108275479,LOC103027436,LOC107671249,LOC107571305,LOC107717480,LOC107552108,LOC107675441 coding downstream 40603 17808272 ~ 17810490 (+)
mfsd11 mfsd11,mfs11 coding downstream 253416 18021085 ~ 18043102 (+)
LOC113527984 LOC108258094,LOC103035820,LOC108438916 coding downstream 294368 18062037 ~ 18063661 (+)
tac4 NA coding downstream 593112 18360781 ~ 18368589 (+)
LOC113528424 NA coding downstream 681617 18449286 ~ 18451161 (+)
G212765 NA non-coding upstream 4190 17744710 ~ 17744984 (+)
G212723 NA non-coding upstream 15130 17733130 ~ 17734044 (+)
G212722 NA non-coding upstream 55091 17692091 ~ 17694083 (+)
G212729 NA non-coding upstream 85214 17663735 ~ 17663960 (+)
G212728 NA non-coding upstream 86980 17661955 ~ 17662194 (+)
G212778 NA non-coding downstream 11246 17778915 ~ 17779181 (+)
G212781 NA non-coding downstream 13111 17780780 ~ 17781027 (+)
G212782 NA non-coding downstream 13562 17781231 ~ 17781456 (+)
G212783 NA non-coding downstream 14043 17781712 ~ 17781928 (+)
G212804 NA non-coding downstream 51749 17819418 ~ 17826350 (+)
cenpx cenpx other upstream 16168 17698673 ~ 17733006 (+)
srl srl,LOC108261333,LOC107695714,LOC107661647,LOC107718567,LOC107553668 other upstream 636018 17087284 ~ 17113156 (+)
LOC113527983 sstr5,sstr2,LOC108260271,LOC103373483,LOC107083133,LOC104918336,LOC102291375 other upstream 1602848 16140330 ~ 16146326 (+)
G211913 NA other upstream 1780415 15918217 ~ 15968759 (+)
LOC117598752 NA other upstream 2757724 14988086 ~ 14991450 (+)
LOC113528485 prkar1b,LOC107661853,LOC107653458 other downstream 416024 18183693 ~ 18342960 (+)
LOC113528171 NA other downstream 642172 18409841 ~ 18415347 (+)
zgc:163143 NA other downstream 657510 18425179 ~ 18434528 (+)
smim22 NA other downstream 1147057 18914726 ~ 18919942 (+)
G213491 NA other downstream 1376405 19144074 ~ 19145240 (+)

Expression


Co-expression Network