LOC113528274 (rab26,LOC105905286,LOC102798624,LOC100707100,LOC101484267,LOC106579017)


Basic Information

Item Value
gene id LOC113528274
gene name rab26,LOC105905286,LOC102798624,LOC100707100,LOC101484267,LOC106579017
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 16400754 ~ 16494702 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026916730.2
TGTGACTGCATCCGTGTATCTGTGCTGTCAAAGCTCCaggacagctagctagctgcacGGTAGGAACAGGCACATTGGTGATAGAAAGCGGATGAATGCTGAAATAACTGTAGCGTTTGATACCGAATTATATAATTGCACTCGCCACTTATGAGTAAAAAGTGTATGTGGAACTTCGTTAAGCATTTCCAAGACACAGTTGAAAACAGGCGTAAGTGAACATTTTACGAGCAGGGTGAGAACAGGTACGAAGGATCCACCGAGGAGACTAAGACAAGATCTTCAGAAGAGCGTTGCGCTGGTGGTCGGTGCGCGCGACTTTCCCTGAAGTCGAAGCTTGACGCGCAATGTCGAGGAAAAAGGCTCCAAAGGGCAAAAGCGGCAGCGCGAGCCCCTCTACCACCAAAGACAACAATAACAGATCGGGCAAAAGTGGCCTGGTGGCTGGAGTTCAGGCTAATGGAGTGGTGCATCCGAGCCGAGCATCTGTCAGCAGTAGTGAATTTTACGACGTCGCGTTCAAGGTGATGCTGGTAGGCGACTCAGGAGTAGGGAAGACCTGTCTGCTAGTGCGCTTCAAGGATGGAGCATTTCTGGCTGGCAGCTTTATTTCTACTGTGGGCATTGACTTCAGGAACAAAGTGCTCGACATTGATGGGGTCAAGGTCAAACTGCAGATCTGGGATACTGCAGGACAGGAGCGCTTTCGCAGTGTTACACATGCCTACTATCGTGATGCCCATGccctgctgctgctgtatgaTGTCACCAACAAAGCATCTTTTGACAACATTCGGGCCTGGCTGACAGAAATCCATGAGTATGCTCAGCAAGATGTGGTTTTAATGATACTGGGCAATAAGGCTGATGCCTCTCACGACAGAACAGTAAGGCGAGAGGAAGGTGAGAGACTAGCTAAGGAGTTTGGGGTGCCTTTCATGGAGACAAGTGCCCGATCTGGCCTTAATGTGGACCTGGCCTTCACTGCCATAGCCAAAGAGCTGAAGCACAGGTCCATGAAGGGTGTTGGTGAGCCCAAGTTTAAATTGCATGAGTATGTCAACAAGGAAATGAAGACCACAGGGTGCTGCAGGACCTAAAATCACaagtgaatgtgtttgtgtgggtacATACACATGTGGTTATCataaatgtgtttacatttgCCCAGCTGagggatttttttgtgtgtgtgtgtatacggtGGACATATGGTTCTTATGACTATGCTTAAATTTGTCCATCTGCATCACGTGTTTGTGTGAGCGTATGTACCCTGAACACATGATAAATGGCAGGCAGTGAACAGTGTGCAGCATTTCATTAGCTTTGTTATACCATGTGTGgattttttattgatttcatGCCTGGGAGAGCCTTGAAGGGCTCATGGGTACTATATTTTCTTCATACTATTTGTGGAGAAGCACAATTCTGCCCTTTTCTATCTGCAAAAGCACCACATACTCTAATCAGTGTAATGGGAAGAAGTGCACTCTTTAGAGAAACAGTCAAGCAATGCTACAAACATGTAGATATAAAATGTTCAATCTTTTTGGTCCAGTAAAGAAATTAGGGGCCACATGCTACctgcaataataaatatattaataaatgaattcatatt
>XM_026916731.1
TGTGACTGCATCCGTGTATCTGTGCTGTCAAAGCTCCaggacagctagctagctgcacGGTAGGAACAGGCACATTGGTGATAGAAAGCGGATGAATGCTGAAATAACTGTAGCGTTTGATACCGAATTATATAATTGCACTCGCCACTTATGAGTAAAAAGTGTATGTGGAACTTCGTTAAGCATTTCCAAGACACAGTTGAAAACAGGCGTAAGTGAACATTTTACGAGCAGGGTGAGAACAGGTACGAAGGATCCACCGAGGAGACTAAGACAAGATCTTCAGAAGAGCGTTGCGCTGGTGGTCGGTGCGCGCGACTTTCCCTGAAGTCGAAGCTTGACGCGCAATGTCGAGGAAAAAGGCTCCAAAGGGCAAAAGCGGCAGCGCGAGCCCCTCTACCACCAAAGACAACAATAACAGATCGGGCAAAAGTGGCCTGGTGGCTGGAGTTCAGGCTAATGGAGTGGTGCATCCGAGCCGAGCATCTGTCAGCAGTAGTGAATTTTACGACGTCGCGTTCAAGGTGATGCTGGTAGGCGACTCAGGAGTAGGGAAGACCTGTCTGCTAGTGCGCTTCAAGGATGGAGCATTTCTGGCTGGCAGCTTTATTTCTACTGTGGGCATTGACTTCAGGAACAAAGTGCTCGACATTGATGGGGTCAAGGTCAAACTGCAGATCTGGGATACTGCAGGACAGGAGCGCTTTCGCAGTGTTACACATGCCTACTATCGTGATGCCCATGCCTTCAAAAGATGTTTCAGATTAGTTGAGGAAGACAAAGTGTTTGCCTCTTTAATGACCTTGGGCTGGAACACTGTGTCCCATTTCTCAAGCAGCTCAGAAAAGGTTTCATCACCAAAGAACAGCTTGAAGTCTTTGATTTCCCTAAGAGGAGTAAGGTTTGTGCCCTGTATAATTACCTTTATGATAAACCTTCATCTATGTTCTGTCATATTCTTCTCTTTTCCAGCAAAGCCATGATTAAAATTTGACATACACTCACATTCCACTGTACACcagcacatttatgcagttatatCATTCTAtaatgtgacagcagcacaataaataaaatcatgcagatataagtca

Function

symbol description
rab26 Enables GMP binding activity and GTP binding activity. Involved in several processes, including Golgi to plasma membrane protein transport; exocrine system development; and regulation of protein catabolic process at presynapse, modulating synaptic transmission. Located in Golgi membrane. Is anchored component of synaptic vesicle membrane.

GO: NA

KEGG:

id description
K07913 RAB26; Ras-related protein Rab-26

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026916730.2 True 1627 mRNA 0.46 9 16400754 16494702
XM_026916731.1 False 1094 mRNA 0.46 5 16400754 16453474

Neighbor

gene id symbol gene type direction distance location
LOC113528350 LOC108259890 coding upstream 573833 15822782 ~ 15826921 (+)
trnar-ucu_8 NA coding upstream 587423 15813242 ~ 15813331 (+)
rnf213a rnf213 coding upstream 737065 15617283 ~ 15663689 (+)
LOC113527870 pcyt2,LOC108277112,LOC108437168,LOC107701914,LOC105013038 coding upstream 834191 15548504 ~ 15566563 (+)
mafga mafga,LOC108277048,LOC107556599,LOC107739593,LOC107729585,LOC107701907,LOC106533856 coding upstream 866474 15523093 ~ 15534280 (+)
LOC113527936 LOC108276743 coding downstream 50939 16545641 ~ 16549914 (+)
cfap70 cfap70 coding downstream 285074 16779776 ~ 16808650 (+)
hmox2b hmox2,LOC108431933,LOC106518701,LOC108247647 coding downstream 314173 16808875 ~ 16819268 (+)
LOC113528175 pam16,LOC108276516,LOC108431934,LOC107601580,LOC107553663,LOC107715621,LOC107718618,LOC106601835,LOC107695711,LOC105924796 coding downstream 337701 16832403 ~ 16971767 (+)
LOC113528633 NA coding downstream 501153 16995855 ~ 16997652 (+)
G212030 NA non-coding upstream 246504 16153616 ~ 16154250 (+)
G212029 NA non-coding upstream 247201 16152255 ~ 16153553 (+)
G212033 NA non-coding upstream 252212 16146379 ~ 16148542 (+)
G211856 NA non-coding upstream 560754 15839772 ~ 15840000 (+)
G211838 NA non-coding upstream 694753 15705749 ~ 15706001 (+)
G212172 NA non-coding downstream 81721 16576423 ~ 16616678 (+)
G212174 NA non-coding downstream 83712 16578414 ~ 16584331 (+)
LOC117598846 NA non-coding downstream 117495 16612197 ~ 16613446 (+)
LOC113528544 NA non-coding downstream 152659 16647361 ~ 16649303 (+)
G212210 LOC108276786 non-coding downstream 175957 16670659 ~ 16688548 (+)
LOC113527983 sstr5,sstr2,LOC108260271,LOC103373483,LOC107083133,LOC104918336,LOC102291375 other upstream 254428 16140330 ~ 16146326 (+)
G211913 NA other upstream 431995 15918217 ~ 15968759 (+)
LOC117598752 NA other upstream 1409304 14988086 ~ 14991450 (+)
socs3a socs3 other upstream 1778966 14619204 ~ 14621788 (+)
zgc:158403 zgc:158403,LOC108258290,LOC108441004,LOC107718630,LOC107553678,LOC107661656,LOC107695678 other upstream 2906812 13464085 ~ 13493942 (+)
srl srl,LOC108261333,LOC107695714,LOC107661647,LOC107718567,LOC107553668 other downstream 592582 17087284 ~ 17113156 (+)
cenpx cenpx other downstream 1203971 17698673 ~ 17733006 (+)
LOC113528485 prkar1b,LOC107661853,LOC107653458 other downstream 1688991 18183693 ~ 18342960 (+)
LOC113528171 NA other downstream 1915139 18409841 ~ 18415347 (+)
zgc:163143 NA other downstream 1930477 18425179 ~ 18434528 (+)

Expression


Co-expression Network