rundc3aa (rundc3a,LOC108259691,LOC108413389,LOC107590794,LOC107684642)


Basic Information

Item Value
gene id rundc3aa
gene name rundc3a,LOC108259691,LOC108413389,LOC107590794,LOC107684642
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 8747709 ~ 8762587 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026916770.2
ttcatatttcatagctttatatttaaattttttttttttttttacatatattaaaataacagcTGTCTATTCTAGCTTTCTGAGGGAATTCAGCATAACGTGGCAACCCGAGTCAAATAAGGAAagggtaaaaaagaaaaaaagaaaaaagtacaccGTGCTGTCATGGGAGGGGTTGGAGGCTCACGGCTCGAAGCGCTGAAGCTGCATCGGATGGAAGCGTCTTGCGTCCACACCGCGATGGCTATGGGTCTAACGTCGAAAAAAGCGTCTAACAGAAACGTGGCGGTGGAGCGCAAGAACCTCATCACTGTCTGCAGGTTTTCAGTAAAGACTCTATTGGAGAAGTACACAGCTGAACCTATTGACGACTCATCGGAAGAGTTTGTTAACTTTGCTGCAATCTTGGAGCACATACTCAGTCACCGCTTCAAAGGTCCAGGTGGTTGGTTCAGTTCAGatggacagaggagtttctggGATTATGTTCGCCTGGCCTGCAGTAAAGTTCACAACAACTGCATCAGTAGCATCGAGAACATTGAAAACATCAGCACGTCCCGAGCCAAGGGCCGGGCGTGGATTCGCATGGCCCTCATGGAGAAGCGTTTGTCTGAATACATTGCCACAGCCTTAAGAGATACTCGGACCACGAGaaagtTTTATGATGATGGTGCCATCATGCTGAGAGAGGAAGCTACAGTCCTGACAGGGATGCTGATTGGACTTAGTGCCATTGACTTCAGTTTCTGTTTGAAGGGAGAGGTATTGGATGGGAAGACACCTGCTGTGATTGATTACACACCATACCTGAAATTTACCCAGAGTTATGACTACCTTAGTGACGAGGAGGACCGGCGCAGCCTGGACAGCAGTGCGAGTGAAGACAGCGTGGCTGAACATCCCTACATTCCTCTGGTCACTGATGAGGAGAGCTGGAGCACCAGGTGTCGCAAGATGGAACAGAGGTTCAAGATCGTCTATGCCCAGAAGGGTTATCTGGAAGAATTGGTGCGACTGCGAGAGTCACAGCTGAAGAATGTAGAGACAGAGAATAAGAGACTGAATGCGAAACTAGAGGATCTGCAAATCCAGAGCCAACAGGAGAAGAAAGAGCTTGAGGCCATTATTCTGGAGCTACAAGCACAACTGACTGGTGTTATTCCATGTGAACCAGCCCATTTGTCAAAAGACCTGTCAGTCTCCTTGGTTAACCAGTGGCCATCCACACAGGCTACAAACAACCAAAGGGATGTAAAGCTATTCCGccgGAGAAGTTTTCACAGTCTCAGCCTCTCTGGTGAAGTCAGTCTGAACTCAAAAGAGTCTCCGAAGACAGATGGGAAACAAAATGGAGACAGTGACTGGTGCTCAGGAGTGAAAGACACTACTCCGTCTATGCTGGGCCTGTGTGGGTCTCTGGCCTCTTCACCAAGCTGCAAGTCTCTGGCCAGTCTTAAATCCAGCGAATATTTGGTGAACATCAGTGCTGAGCCCAGCCCTGCCCTCTCCCCCAGCTAGGGCTCACAAGAGTTCATTCTCACTAGTGacgaaaaaacataaaacattccccccccttctcttttcttctgacTAGAGATTCATTATTTCTGTCTTCCACCACTGTGCATcctcatttattcatattctcAAATCATCTCATAAATAAGTAATAGTCTCACTGTTCTGGAGAGGCATGTCTTTCTCGGTTTGTAGCTTCCTTACTGAGAAAGTGTTGAATACTGGCATGAACCACCATTATCCCCCAATTTCTGATCAACTCCATATAATCTCCGGTCACTATATTCCTCCCATCCACCGCTCGCCTTCATTACAtgatgagagagaatgaatttATGCTCATCTGCATGAGATCAGACCTCCATCCTGAACGACTGTACATGTATTCACTGATGTGCTTGTGCCACCTACAGTTATGCCTGATGTTGTGTATGTGGAGGTAGCAGCAAACTTAAACTCCTGtggttattttatgtttatgaagCTTTGATTGGCTTGAGGAAttgtgctgctttgtttatacatatatacaatatacatatattttgttATGTAGTGGTAGTGCTTTTTGTCCATCAATAAAATGGCCGTCATTTTCA
>XM_026916771.2
TAGGGGgtaaatattttagtttttttggggggtgcAGTTaagagacttttatttaacaggGTGATTCATCCAGACATAACTGCTCCATCTTAATCCAAAGAAGTAGCTAAAATCACACAAAATACAATGCTGTTAGCTCTATGCTGCGAAAAGGCCTAAATGGTTGATTTGTATCTGGAAAGAAATTGAAGAGAGTTTATATTTTAAGCTTAATGTGGAATTTGTGTAAACAAAGTGCTAGTTGTGGTGATACCGCAGGGAGGGGTTGGAGGCTCACGGCTCGAAGCGCTGAAGCTGCATCGGATGGAAGCGTCTTGCGTCCACACCGCGATGGCTATGGGTCTAACGTCGAAAAAAGCGTCTAACAGAAACGTGGCGGTGGAGCGCAAGAACCTCATCACTGTCTGCAGGTTTTCAGTAAAGACTCTATTGGAGAAGTACACAGCTGAACCTATTGACGACTCATCGGAAGAGTTTGTTAACTTTGCTGCAATCTTGGAGCACATACTCAGTCACCGCTTCAAAGGTCCAGGTGGTTGGTTCAGTTCAGatggacagaggagtttctggGATTATGTTCGCCTGGCCTGCAGTAAAGTTCACAACAACTGCATCAGTAGCATCGAGAACATTGAAAACATCAGCACGTCCCGAGCCAAGGGCCGGGCGTGGATTCGCATGGCCCTCATGGAGAAGCGTTTGTCTGAATACATTGCCACAGCCTTAAGAGATACTCGGACCACGAGaaagtTTTATGATGATGGTGCCATCATGCTGAGAGAGGAAGCTACAGTCCTGACAGGGATGCTGATTGGACTTAGTGCCATTGACTTCAGTTTCTGTTTGAAGGGAGAGGTATTGGATGGGAAGACACCTGCTGTGATTGATTACACACCATACCTGAAATTTACCCAGAGTTATGACTACCTTAGTGACGAGGAGGACCGGCGCAGCCTGGACAGCAGTGCGAGTGAAGACAGCGTGGCTGAACATCCCTACATTCCTCTGGTCACTGATGAGGAGAGCTGGAGCACCAGGTGTCGCAAGATGGAACAGAGGTTCAAGATCGTCTATGCCCAGAAGGGTTATCTGGAAGAATTGGTGCGACTGCGAGAGTCACAGCTGAAGAATGTAGAGACAGAGAATAAGAGACTGAATGCGAAACTAGAGGATCTGCAAATCCAGAGCCAACAGGAGAAGAAAGAGCTTGAGGCCATTATTCTGGAGCTACAAGCACAACTGACTGGTGTTATTCCATGTGAACCAGCCCATTTGTCAAAAGACCTGTCAGTCTCCTTGGTTAACCAGTGGCCATCCACACAGGCTACAAACAACCAAAGGGATGTAAAGCTATTCCGccgGAGAAGTTTTCACAGTCTCAGCCTCTCTGGTGAAGTCAGTCTGAACTCAAAAGAGTCTCCGAAGACAGATGGGAAACAAAATGGAGACAGTGACTGGTGCTCAGGAGTGAAAGACACTACTCCGTCTATGCTGGGCCTGTGTGGGTCTCTGGCCTCTTCACCAAGCTGCAAGTCTCTGGCCAGTCTTAAATCCAGCGAATATTTGGTGAACATCAGTGCTGAGCCCAGCCCTGCCCTCTCCCCCAGCTAGGGCTCACAAGAGTTCATTCTCACTAGTGacgaaaaaacataaaacattccccccccttctcttttcttctgacTAGAGATTCATTATTTCTGTCTTCCACCACTGTGCATcctcatttattcatattctcAAATCATCTCATAAATAAGTAATAGTCTCACTGTTCTGGAGAGGCATGTCTTTCTCGGTTTGTAGCTTCCTTACTGAGAAAGTGTTGAATACTGGCATGAACCACCATTATCCCCCAATTTCTGATCAACTCCATATAATCTCCGGTCACTATATTCCTCCCATCCACCGCTCGCCTTCATTACAtgatgagagagaatgaatttATGCTCATCTGCATGAGATCAGACCTCCATCCTGAACGACTGTACATGTATTCACTGATGTGCTTGTGCCACCTACAGTTATGCCTGATGTTGTGTATGTGGAGGTAGCAGCAAACTTAAACTCCTGtggttattttatgtttatgaagCTTTGATTGGCTTGAGGAAttgtgctgctttgtttatacatatatacaatatacatatattttgttATGTAGTGGTAGTGCTTTTTGTCCATCAATAAAATGGCCGTCATTTTCA

Function

symbol description
rundc3a Predicted to enable GTPase regulator activity. Predicted to be involved in positive regulation of cGMP-mediated signaling. Located in intracellular membrane-bounded organelle.

NR:

description
PREDICTED: RUN domain-containing protein 3A-like isoform X1

GO: NA

KEGG:

id description
K24787 RUNDC3; RUN domain-containing protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026916770.2 False 2120 mRNA 0.45 12 8747709 8762587
XM_026916771.2 True 2210 mRNA 0.45 12 8747709 8762412

Neighbor

gene id symbol gene type direction distance location
fam117aa fam117a,LOC108413398,LOC101073443 coding downstream 2666 8729965 ~ 8745043 (-)
slc35b1 slc35b1,LOC107590797,LOC107684645 coding downstream 19111 8716324 ~ 8728598 (-)
spop spop,LOC107754841,LOC100710366 coding downstream 87588 8566771 ~ 8660121 (-)
ubtf ubtf,LOC102797579,LOC107660581 coding downstream 498920 8238150 ~ 8248789 (-)
atxn7l3 atxn7l3,LOC108276986,LOC107571925,LOC107660606,LOC107566928 coding downstream 511087 8226297 ~ 8236622 (-)
tlcd3ba fam57b,fam57ba,LOC108410608,LOC107678875,LOC107684641,LOC107710888,LOC107754912 coding upstream 2092 8764679 ~ 8779068 (-)
nlk1 nlk1,nlk,LOC108260705,LOC108410603,LOC103027970,LOC106583944,LOC104935892,LOC107678874 coding upstream 20812 8783399 ~ 8793415 (-)
LOC113528536 LOC108278430,LOC108410602,LOC100535691,LOC107710886,LOC107678873,LOC107582858 coding upstream 32933 8795520 ~ 8802855 (-)
cdipt cdipt,LOC107710884,LOC107582865,LOC107678876,LOC107684638 coding upstream 42655 8805242 ~ 8808981 (-)
taok2a taok2,LOC108278428,LOC107590788,LOC107710882 coding upstream 48821 8811408 ~ 8834736 (-)
G208016 NA non-coding downstream 98346 8574635 ~ 8649363 (-)
G207895 NA non-coding downstream 212997 8534503 ~ 8534712 (-)
G207860 NA non-coding downstream 254668 8492815 ~ 8493041 (-)
G207793 LOC107737118,LOC107558774 non-coding downstream 315448 8431998 ~ 8432261 (-)
G207732 NA non-coding downstream 389635 8353710 ~ 8358074 (-)
G208062 NA non-coding upstream 97976 8860563 ~ 8873502 (-)
G208063 NA non-coding upstream 109389 8871976 ~ 8914559 (-)
G208097 NA non-coding upstream 192855 8955442 ~ 8955655 (-)
G208098 asphd1 non-coding upstream 193279 8955866 ~ 8956397 (-)
G208099 NA non-coding upstream 194674 8957261 ~ 8958211 (-)
ndufa4l ndufa4l,LOC108260900,LOC108413413,LOC107684646,LOC107590798,LOC103026352,LOC107582867 other downstream 34391 8707954 ~ 8713318 (-)
selenow2a mien1,sepw2a,LOC107566883,LOC107755209 other downstream 457901 8279767 ~ 8289808 (-)
LOC113528661 NA other downstream 463117 8284474 ~ 8284592 (-)
slc4a1a LOC108279353 other downstream 480071 8249885 ~ 8267638 (-)
crhr1 crhr1,LOC108261365,LOC107662410,LOC108413653 other downstream 1042217 7559767 ~ 7705492 (-)
LOC113527952 LOC108260010,LOC108274064 other upstream 350379 9112966 ~ 9142871 (-)
dnal4a dnal4,LOC108261343,LOC108412416,LOC108436609,LOC106591471 other upstream 433909 9196496 ~ 9203640 (-)
prr15la LOC108273894,LOC108412372 other upstream 647217 9409804 ~ 9419584 (-)
copz2 copz2,LOC108260256,LOC108413159,LOC107740614,LOC107662379,LOC107710054,LOC107585036,LOC107687783,LOC105013247,LOC108246742,LOC106527321,LOC106912034 other upstream 701744 9464331 ~ 9474478 (-)
hoxb8a hoxb8a,LOC108278530,LOC108413053,LOC103044850,LOC107582957,LOC107662386,LOC107585089 other upstream 967264 9729851 ~ 9732566 (-)

Expression


Co-expression Network