XLOC_005357 (foxn2b)


Basic Information

Item Value
gene id XLOC_005357
gene name foxn2b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 24796517 ~ 24832297 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00010264
tgaagatgtctgcatatttgtgccagtctgtcaaataaaatgaattaaaacactTAATTATTTTAGAGAAAGTAGTTAAAGTTTGCTTAAGCAATAATTGAGCttgattgattcatttttaatgaactttgaTTACATGACCGATGAATTAACGGTAGCACCCACAGATATAACTGAGAAATGATGTGCTCCTTTTGTCCAGTGTCACCCATGTGATGGAACTCGTTGTGAAGATCGGGGAAAAAATCAACATGCTAAACTTTCTGCGATGGTGCCGTGAGGTGTCACAGACATGATATTGGTTGACGttaactatgccacattacacgagAAGAAACTATTGAATCTTGTGTCAAAACGCCCATTTGTCATTCACGAGTCCCTACGACACATTACGTCAAGTTAATCGTGCCAGAATTGTGTGATCTGACCAAGGCTTTAATTgcatttaccttttttatttgtaaactcTCACAGCACCATTTATTCACCATTGATCACTATAAAAACCTGTTTTCACCAATCTTCTTTTCTTCCGCAGACCCTCCTGGTTTGATGGGTCCGATAATCGGCATGTCTCCAGATAAGAAAGCCGAATCTCCTGGAGCACAGGGAGCGTGTGGAGCTGGGACTCTCCCTGAAGCAGAGAGTGCTTCCAGTCCAATGGCCACCAGTCTAGATCAAATTGGTCGATCTGTCAGTGTTGTGGCAGGCGAGTCTGAAGACGACGAGCTCACAAACCTGAACTGGCTTCATGAGAACTTGCTACAGAACTTCTCTCTTGGAGGGCCCGAGGCACAACCCATCAACAGCCCACTGTTTGACATTGAGGGTGGCATCGGGTCACCACATAGCAACACCAATTCATCCGCCTCCTCTGTTTCGACAGGAAGCGAAAGAGATCCTTACAAGTCTAAGCCTCCCTTCTCTTTCTCCTTATTGATATACATGGCCATCGAGCAGTCACCTAGCAAATCTCTCCCAGTGAAGGACATCTACGGCTGGATCCTCAAGCATTTTCCATATTTCTCCAGCGCCCCTACTGGCTGGAAGAACTCAGTGCGCCACAACCTGTCTCTTAACAAGTGCTTCCGCAAAGTAGAGAGAAGCATAGGAAAGACCAATGGGAAAGGCTCTCTGTGGTGCGTTCATCCTGAGTTTCGGCCCATGCTGATGCAGGCCCTGAAGAAGCAGCACTTCCCCAATGCTCATGCCTTCTGCACCCCGCCTGCCTCCCCTCCTAGTGCCTCATCTCCTCCTCATCACCTCTTCACTTCGGAGCAGGGCTGTGCCCTAAAAGAATGTGATTTTGATGCTGCCACTGCCATGATGCTGTTAAAGTCTGCCTCTGAGCAGAACATTGACTCATACCCAGAAGAACAAGAAGGACCCATCGATCTCTCCAGAAGGGACTTGGTGGTGGTGAGTCGGGATCCAAAGCAGGATCACAACTACAGCAGCACCCCTGCCCCTCCCTGCCCTCGCCAGATGCCTCTTTCACAGCCGCTCAACTTCAGCCTAGGTTTGCACCACGATCAGGAGAGACGATGGCCACACAATCCACTGCAGGGTCAGCTTTTAGGGAAACGCAGCCGAAGAGATTCACGTCCCGATGTGGATGAGGAGCTCAAGGAGGCGGCTGGATCGCTATTACACCTAGCCGGTATTCGCACCAGTTTAGTCGCCTCAAGACGCAAGAGCAGGAAACTCAGTAGGAAATGAACCCAATTCTGTAACTTCATCCTGTGGCCTGCCCAACCTATTTATCTCGCTCTCTCCTCTGGTTTGGTGTTTCTTCCTTTTCATTTCTAGTTTTTGGGGTGTTTTCTTTTCGTCTTTTTAACCGGGATTACATCCCCGGTCCACTCATCAAAACATGGCAATACAAACACAGGAGAGAAAAGCCATACTGACATGTTTTATGTACAGAAAACAAACAGCCCACGTCATTTTGAGTTCATACGAAGAGGATTTGAAGATGTTAATCATTACAAAAAAACACACTggttaaagaaaaaaagatttgcaTGCTTCCACCTCTAAATCAACACAAAACTTAtttatatgaagaaaaaaaaaaacgaatgcaTGGATTGTACAAGCTCCCACGCTTCTTCACCATAGAAGGAAACAAAAAAAGCTTAAGAAAACATCAATTTGAAAGTGCCATTGATTTTTGGATCATACTATAAACATGATACAAAGAAGAAATGCAATAATTAGTCCACCTAAATACCTGTAgttcttttatttttgtactgCTGGTTTATATCTCATGTGTTGTGACGGCATGCCCCTGGGAGCCTTTCGCTGCCGCAGTTATGATGTCAAAGTCACATGACTCTTCTCGTGCATCCTGATTGGATCATTTGTGTGTCCCCGCCCCCCGATCCTGATCATTATGACTGGAGGACAGCTCGAAAGAATCAGCTTGCATGCACCTCCACCTCAGTGTTTCCCAGACGCCAGCGATCTCAATAATCAGGTTTTGGACTTGATTCATATGTGTACTGCTTGCTTTTGGAGCAGCCAATGACAAAACAAGAACCTCTTTAGCTCCTCTATAAGATTCAAATCAACTCAAAGAGTCATCTCCACCCAAAGCAGGCTTTTGTTTTGGTAGAAAACGTGAGGAATTGTCCAGCAGGGGGAGCTCCATGAAACGCCACTTTCCCACTGCTGCTTTTGAGGCCTCCAGAGAGTCGTGAGGAAACCAGAAACAATGTGAATTGCACTATAAACGCGCCTGCAAACAGGAGAGAGACGTTCTCCCATCACTGCGGCTCACAGATGGTGCTGACTTTGGGAGAAATAATCAATGGGAGAGCCAAACGGACGTAAAGTGTGCTCCTaagatgtttgattttttttttttttttctttttcgccAAAGCTGCTGCTCACAAAACTTTGCCTGGCTGTGTGTGACCTTCGGTTTGTTCCTGATTGGGTTTTTAAGTGTTTGTTTGAGACTACATTAGGATTTTATATACCCACGCATGTGAAATTGTGAACTATAACTGCCACTTGCCCCATTACACTGGCAAAACCTGAACTTCCTGAATGAgttgattatttaaaaactgcCTATCCTCGTGAAGCTCTTTCGCTGTCACTTTAATCATCGCTGCCAATCCTTCTCCTCCCGGCTGTACATAGTGCTAATACAGAATGCAAGTATTAACGCAGGGAGGGGAGCCGAGCAGTAGTTTTAGAATTTGAGGCCAATTTTGAAAACCgctgcctattattattattattatagtattattattattgagataTGGTCCACTAACTGAGTTGCCACTTCCCCATCAGTTTTGTCATGTTCGTCTGCTATGAAGGCGGCAGGCTGAACCTGATTTTTGATTTTGTAAGCTAACCTCTGTTAATAAAAggtttataaagtttatttttgccAAAGATATGCAACTGTTGCATTATATATGGTATTAAAGaataaaagagttttttttctttta
>TCONS_00010265
GTCAGGGGGAGATCGGAGAGGAGGGGGTCTGATTGGCTGAAGCGGTGCTGTTGCCCCGGCGACGGCAGGGGGGGTACGGAAGCGTTGCCGTGCGGCGTGATCTCCTCCGCGCTGCGTGGATGGAGGAAGCAGCTGCTGATCTTTTGACACAGCGCGAGCGAAAGGCTACTGCATGAAAAAGCACGGCAGCTTTTGTCGTCGGACGCCACAGTAGAATGCACGAATACCCTCCTGGTTTGATGGGTCCGATAATCGGCATGTCTCCAGATAAGAAAGCCGAATCTCCTGGAGCACAGGGAGCGTGTGGAGCTGGGACTCTCCCTGAAGCAGAGAGTGCTTCCAGTCCAATGGCCACCAGTCTAGATCAAATTGGTCGATCTGTCAGTGTTGTGGCAGGCGAGTCTGAAGACGACGAGCTCACAAACCTGAACTGGCTTCATGAGAACTTGCTACAGAACTTCTCTCTTGGAGGGCCCGAGGCACAACCCATCAACAGCCCACTGTTTGACATTGAGGGTGGCATCGGGTCACCACATAGCAACACCAATTCATCCGCCTCCTCTGTTTCGACAGGAAGCGAAAGAGATCCTTACAAGTCTAAGCCTCCCTTCTCTTTCTCCTTATTGATATACATGGCCATCGAGCAGTCACCTAGCAAATCTCTCCCAGTGAAGGACATCTACGGCTGGATCCTCAAGCATTTTCCATATTTCTCCAGCGCCCCTACTGGCTGGAAGAACTCAGTGCGCCACAACCTGTCTCTTAACAAGTGCTTCCGCAAAGTAGAGAGAAGCATAGGAAAGACCAATGGGAAAGGCTCTCTGTGGTGCGTTCATCCTGAGTTTCGGCCCATGCTGATGCAGGCCCTGAAGAAGCAGCACTTCCCCAATGCTCATGCCTTCTGCACCCCGCCTGCCTCCCCTCCTAGTGCCTCATCTCCTCCTCATCACCTCTTCACTTCGGAGCAGGGCTGTGCCCTAAAAGAATGTGATTTTGATGCTGCCACTGCCATGATGCTGTTAAAGTCTGCCTCTGAGCAGAACATTGACTCATACCCAGAAGAACAAGAAGGACCCATCGATCTCTCCAGAAGGGACTTGGTGGTGGTGAGTCGGGATCCAAAGCAGGATCACAACTACAGCAGCACCCCTGCCCCTCCCTGCCCTCGCCAGATGCCTCTTTCACAGCCGCTCAACTTCAGCCTAGGTTTGCACCACGATCAGGAGAGACGATGGCCACACAATCCACTGCAGGGTCAGCTTTTAGGGAAACGCAGCCGAAGAGATTCACGTCCCGATGTGGATGAGGAGCTCAAGGAGGCGGCTGGATCGCTATTACACCTAGCCGGTATTCGCACCAGTTTAGTCGCCTCAAGACGCAAGAGCAGGAAACTCAGTAGGAAATGAACCCAATTCTGTAACTTCATCCTGTGGCCTGCCCAACCTATTTATCTCGCTCTCTCCTCTGGTTTGGTGTTTCTTCCTTTTCATTTCTAGTTTTTGGGGTGTTTTCTTTTCGTCTTTTTAACCGGGATTACATCCCCGGTCCACTCATCAAAACATGGCAATACAAACACAGGAGAGAAAAGCCATACTGACATGTTTTATGTACAGAAAACAAACAGCCCACGTCATTTTGAGTTCATACGAAGAGGATTTGAAGATGTTAATCATTACAAAAAAACACACTggttaaagaaaaaaagatttgcaTGCTTCCACCTCTAAA
>TCONS_00010266
TCTTTCTCCTTATTGATATACATGGCCATCGAGCAGTCACCTAGCAAATCTCTCCCAGTGAAGGACATCTACGGCTGGATCCTCAAGCATTTTCCATATTTCTCCAGCGCCCCTACTGGCTGGAAGAACTCAGTGCGCCACAACCTGTCTCTTAACAAGTGCTTCCGCAAAGTAGAGAGAAGCATAGGAAAGACCAATGGGAAAGGCTCTCTGTGGTGCGTTCATCCTGAGTTTCGGCCCATGCTGATGCAGGCCCTGAAGAAGCAGCACTTCCCCAATGCTCATGCCTTCTGCACCCCGCCTGCCTCCCCTCCTAGGTATCAACACTGGCCTCGGTGTACAACATACAGTTCATCTAGGCTTATGTCTCTTACTCTGTCGTTCCTTCTATCAGTCAATGTGCTGTTCTATATTTCTATTGTTTTATCATTgtcaattattttattgttgtctgtcattctattgttctttattttatccttgtctgtttgtctatctattaTTCTATCAAtaattctatctattgttctaactttttattgttcttttctGTAGTTCTATTGTACTAAATTTCT

Function

symbol description
foxn2b Predicted to enable DNA-binding transcription factor activity and cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription, DNA-templated. Predicted to be active in nucleus. Orthologous to human FOXN2 (forkhead box N2).

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050417-1 Predicted to enable DNA-binding transcription factor activity and cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription, DNA-templated. Predicted to be active in nucleus. Orthologous to human FOXN2 (forkhead box N2).

Ensembl:

ensembl_id ENSDARG00000045105

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00010264 False 3482 mRNA 0.44 5 24796517 24812403
TCONS_00010265 False 1728 mRNA 0.51 6 24797955 24832297
TCONS_00010266 True 575 lncRNA 0.42 2 24802546 24811476

Neighbor

gene id symbol gene type direction distance location
XLOC_005356 NA coding downstream 4650 24788503 ~ 24791867 (-)
XLOC_005355 NA coding downstream 75191 24714386 ~ 24721326 (-)
XLOC_005354 NA coding downstream 494502 24280847 ~ 24302015 (-)
XLOC_005353 NA coding downstream 616448 24179244 ~ 24180069 (-)
XLOC_005352 chac2 coding downstream 736159 24056000 ~ 24060358 (-)
XLOC_005358 fbxo11a coding upstream 9422 24841719 ~ 24904944 (-)
XLOC_005359 msh2 coding upstream 73809 24906106 ~ 24928497 (-)
XLOC_005360 socs5a coding upstream 210859 25043156 ~ 25065916 (-)
XLOC_005361 cript coding upstream 261802 25094099 ~ 25097520 (-)
XLOC_005362 rhoq coding upstream 277719 25110016 ~ 25150279 (-)
XLOC_005350 NA non-coding downstream 1376207 23415226 ~ 23420310 (-)
XLOC_005367 NA non-coding upstream 591420 25423717 ~ 25432558 (-)
XLOC_005369 NA non-coding upstream 1053362 25885659 ~ 25887891 (-)
XLOC_005374 CR854941.1 non-coding upstream 1307908 26140205 ~ 26140321 (-)
XLOC_005375 CR854941.2 non-coding upstream 1368588 26200885 ~ 26219991 (-)
XLOC_005378 NA non-coding upstream 1630009 26462306 ~ 26466782 (-)

Expression


Co-expression Network