LOC113528311 (rgl3,LOC108432062,LOC107653475,LOC107718589,LOC107563227)


Basic Information

Item Value
gene id LOC113528311
gene name rgl3,LOC108432062,LOC107653475,LOC107718589,LOC107563227
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 13147303 ~ 13169715 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026916798.2
TTGGCGTTGGCAAGAGGCGCGCGCGACGGGACAGACCGAGGCGCAGAAGAAGCGGCTTTGACATTATAAACAACAAGAGACTCGTTAGTTACGGTTTTAAAATTTGACATTTCTCGGCGTTTTAATATCAAACATTAAACTCTAGCAACTTTTAAAGATATACTAGACATGTTAAACACGATTATCTTGACGAAAATATTTTAGTTCTATTGTAACGGctcatattttaattcattttgagCGTTATGAAGTTACTGAGCGTCATGGAAAATGCAGAGATAATAGTTTTATGCGATTTTAGTTAAACGGGATATGACCATGGACGCAGTTGCACCGTAGGTCTCTGTCGGACGttgctgtgagagagagatgggaaaaTGGGAGTTAACCATGGACCCTGTTCAGGAGTGGGGTGAGGAGTTTGAGGATGGTGCCGTGTTCGGCATCACACTGCGCAGAGAGCGAGTGCAGCAGTCAGGCGAGGCGGCCGAGGCCTCTCCCTGCTGTGCGTACGTTCAATACCGTACATCTAAAGTCCGGAGGCTGAAAGCAGCCACGCTAAACCGTGTGGTGGATCACCTGCTTGATCCCTGCTGCCAAGAGCAGGACTATGGGAGGATACTTCTTTCTACATACCGCACCTTCATCAGCACCAACAAACTCATCGAGCTGCTTTtccagagAGACAGTCTTGACTCTGAGCTGGACAACAGCAAGTGTCATAAGAGctCTCTATGGACTCTACTCCAGACCTGGTTGGATGAGTTTGCTGAGGATTTCAGGGATCCTCCAATGCACTCTTCGTTGCGCTTAATGTGCCTGCAGCTGAGGCGACACACCTCTCTTTCGGCCCTGGCCAAGTGCTATGAGGCTCTCCTCAAGAAATTCCAATCAGAAGgTGTTGTGAATAACGATCAAGCCGGTGGGGAACAGGAGCCGGAGTTGAGTCAGGGAGAGAAGGACTTGGATGATGTAAGCAGTCAGGCAGACTTCATGGACTTCTCTGTCACAGAACTTGCAGAACAGCTCACCAGACAGGATGCTGAGCTGTTTGTGAAGGTGGTGCCCTTCCAGTGTCTGGGCTGTGTGTGGTCTCAGAGAGATAAGAAGGAAAACCTCTCACCCACCATTCGTGCTACCATCTCCCAGTTCAACGCTATTACTAACCGTGTCATCACCTCACTGCTCTGCCCATCCACCTCTCCCTCTTCCACTCCATCATCCACTCCGAACCAGAGAGCAAGAATCATAGAGAGATGGATACGAGTTGCACAGGAGTGCAGGCAGCTGAAGAACTTCTCCTCCCTGAGGGCCATTTTGTCTGCGCTGCAGTCCAACCCGATTTACAGGCTGAGGAAGACCTGGGCTGCAGTAAGCAGAGAAAGTGTGAGCACCTTTGAGAACCTGTGTGAAACTTTCCCAGATGAGAACTGTGTGTTGACCAGCAGAGAAATCCTTGTGGAGGATGGGAACCAGGCAGCCATGGACAATATTTTACCCAAGACATCCAAGCAGTGTCCCCTGTCCAAACAGATGaacACCAACAATGGAGTTGTGCCTTACCTGGGAACATACCTCACTGTACTCACCATGCTGGATACAGCGCTGCCTGATACTGTGGAGtgtgacTACATAAATTTCGAGAAGCGCAGGAGGgaGTATGAGATTCTGTGGCAAATCCGTCAGCTCCAAGCATCTTGCTCTCAGTACACTTTACCAGACCATCCTCAGATTGCAGCCTGGTTACAGTGTCACAGCCTGCTCACAGATCAGGAGAGTTATGAGTTGTCCAGACAGCTGGAGCCTCCACTTGACAGCTGTTCACCGTCCAGCGGTACAGCCTCGAATCACCGTTCACTCACCAAAAGGCTGACTTCcCTCCTGAATGTGACTGACAGCTCCAAAAAGAATGCTGACCAAATTAGTGTCTCATCTTCTGGATCCAGCAGCTCTGAAATGGAGGATCTCTCCACAAATCAGTCATCTCCTCTTGGAGCACAGTCACTCTCAAGCTCCTGCCAAAACATGGCTGACAGcatttcttcctcttctcctaCGGACTCTTCTGGCTCCTCCACCAGCTCCCAGGCCGAACTCATTCTCTCTTCACCGGCCACTTCATCAACTCCATCCAAGCCTGGCCATAAGCGCTCAGTCTCCATGACCTCGCTGCCCCTGTACAACAGGCAGGTGGCCGACTCCTGCATCATTAGGATCAGTGTGGAGAGCGGCAACAATGGCAACATGTACAAGAGCATCCTGCTGACTAGTCAGGAAAAAACAGCCCAGGTGATCGAGAGGGCCCTGCAGAAGCACAACCTGGAGAACGCCAGTGTACAGGACTTCAGTCTCGTCCAGATGTTGGCTCAAGGCAAAGagctTATCATTCCAGACAAAGCCAACGTCTTCTATGCCATGTCTACTTCAGCCAACTATGACTTTGTTTTACGTCGTTGTCCAAAAGGCCAGCGGAAACAACTCACACGCTCAGCATCAATGTCAGCAGGCCGGTCTACGAAATAACAGAGCTCAGGAGAACTCGTGATGAGAAGAAACTGAATTTGCTTAGAAATCGGCACGATACTGAAATGCCACTGAACTTGTTATGGTTTCAGTTTTTATATATGAAATGTACATAGAATATATGTAAATAGTCAAACATATTTATGCTTATTTAATGGTTGCTATTTGCTACCTGACAGATATTTTTCTAATAATGACAATAAGTTAATAACTGCTCACCTTGAACTTAACTGAACACTGATTTCAGGGAGAGTTGAGGCAGGACACATGGTTCTAACCTGCCAGAAGTGTAGAGGCTTTATATTGATAAAATTCTAATAGTGGTATATTGTGTGCACTGGGTTGTAGCAGTAAGATTCCTAATCCCACAAGTCATCTCTGTCTTTGAGAAAAAGTCACAGCGGCTACAGAACCAGTGTAATATGCAGCACAAACACTCATCACATGGCCTGAGTTTCGCTGTCAGTTTCTGTCAAACTGAGCATGACTATCACCTCAACGTTGCAGTCTTTGCATACCAGATTACATAATCAAGAGCTTCATAGTATTGTAGAATTTATAGCCTGTACCATTTTCTCATAAAGCATAATGAATTTACACAATTATCTTCTTTTAGTGTGGACCTGAAATTCATTTCGGTACTACTGAGGCTCTTTCCCACTTACTTCATTTTGCTGATAATTTGATAATTTGCATCCTTTCTGTTTATAAGACTTAGGTGATACTTAAGAGGCTGATAAAAAGCTAGCACATGTCCTGTACTGCAAATATAGTTGAGTGTGTATCACATGTAgacattacattaacatttaatgtcaaatgtcatgtttataccaacaagtttcttttttttaaccacatatCTGATGTATCGTTGATCCTTTCAGTGTCTTTGTAGAGCAACCTGCCTTTCTTATGATCAAATTATATATGGACAGCCATTTCAGCAAGTTCCCACTTCATATCTTGAGAAATCATGACAAAAAGAAGATGTACTGCCTGTCTTTAAAGTAGATATAGGTGACAGAGAAGATCACAATGTTCCTTTGCCATAGCGCAGCACCATGGTGATATCGATTAGGCGTGTAccttttgtgtgcgtgtgtgcatgtgtacgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgggagataAAGGTACTGCACTAACAGGCACAGTGACATTCCACCGTCACACTGCAGAGTGATAGAAGTCTAATCAGCAGTTGCTACAATGTTTAACAATTCCACTGAAATGTCTTGCACTTTCATGCACTTGTTCCTGACTGAGGCTTTAGAGAAAGTCTGATACTACCACTGATATCTATTTATTCTTTAGTGCTTTAAAATAACACATTGAATTTCTGTGCAGTTATTATAGGAGAGATATATTTTCTTGTTCCTAACCACAGATGTATTCTTTGACTCTGCTGTTTAAAGTAGATTTGTTCTTACAAAAGAGAAATATTGTGTAGTATCCAATTCATTATTCTTAGgagaatcagaaacagactttgAGTTTAGTAACATACTTGGAGAAGAAATTATCACACTGATCATTACTGTattatagtgtactgtattttgGACTTATTCCACTCTGCAATCCATAGCATTTCATTGGCTTACTGTAGATACTGCTTATGCATGTACATGTAGCACTTCACTAAAGATTAAAATGAACTTAAACTGTT
>XM_034310204.1
TTGGCGTTGGCAAGAGGCGCGCGCGACGGGACAGACCGAGGCGCAGAAGAAGCGGCTTTGACATTATAAACAACAAGAGACTCGTTAGTTACGGTTTTAAAATTTGACATTTCTCGGCGTTTTAATATCAAACATTAAACTCTAGCAACTTTTAAAGATATACTAGACATGTTAAACACGATTATCTTGACGAAAATATTTTAGTTCTATTGTAACGGctcatattttaattcattttgagCGTTATGAAGTTACTGAGCGTCATGGAAAATGCAGAGATAATAGTTTTATGCGATTTTAGTTAAACGGGATATGACCATGGACGCAGTTGCACCGTAGGTCTCTGTCGGACGttgctgtgagagagagatgggaaaaTGGGAGTTAACCATGGACCCTGTTCAGGAGTGGGGTGAGGAGTTTGAGGATGGTGCCGTGTTCGGCATCACACTGCGCAGAGAGCGAGTGCAGCAGTCAGGCGAGGCGGCCGAGGCCTCTCCCTGCTGTGCGTACGTTCAATACCGTACATCTAAAGTCCGGAGGCTGAAAGCAGCCACGCTAAACCGTGTGGTGGATCACCTGCTTGATCCCTGCTGCCAAGAGCAGGACTATGGGAGGATACTTCTTTCTACATACCGCACCTTCATCAGCACCAACAAACTCATCGAGCTGCTTTtccagagAGACAGTCTTGACTCTGAGCTGGACAACAGCAAGTGTCATAAGAGctCTCTATGGACTCTACTCCAGACCTGGTTGGATGAGTTTGCTGAGGATTTCAGGGATCCTCCAATGCACTCTTCGTTGCGCTTAATGTGCCTGCAGCTGAGGCGACACACCTCTCTTTCGGCCCTGGCCAAGTGCTATGAGGCTCTCCTCAAGAAATTCCAATCAGAAGgTGTTGTGAATAACGATCAAGCCGGTGGGGAACAGGAGCCGGAGTTGAGTCAGGGAGAGAAGGACTTGGATGATGTAAGCAGTCAGGCAGACTTCATGGACTTCTCTGTCACAGAACTTGCAGAACAGCTCACCAGACAGGATGCTGAGCTGTTTGTGAAGGTGGTGCCCTTCCAGTGTCTGGGCTGTGTGTGGTCTCAGAGAGATAAGAAGGAAAACCTCTCACCCACCATTCGTGCTACCATCTCCCAGTTCAACGCTATTACTAACCGTGTCATCACCTCACTGCTCTGCCCATCCACCTCTCCCTCTTCCACTCCATCATCCACTCCGAACCAGAGAGCAAGAATCATAGAGAGATGGATACGAGTTGCACAGGAGTGCAGGCAGCTGAAGAACTTCTCCTCCCTGAGGGCCATTTTGTCTGCGCTGCAGTCCAACCCGATTTACAGGCTGAGGAAGACCTGGGCTGCAGTAAGCAGAGAAAGTGTGAGCACCTTTGAGAACCTGTGTGAAACTTTCCCAGATGAGAACTGTGTGTTGACCAGCAGAGAAATCCTTGTGGAGatATCTAGAATACATCGTGCTTCTGCAGCAGTCCAGGATGGGAACCAGGCAGCCATGGACAATATTTTACCCAAGACATCCAAGCAGTGTCCCCTGTCCAAACAGATGaacACCAACAATGGAGTTGTGCCTTACCTGGGAACATACCTCACTGTACTCACCATGCTGGATACAGCGCTGCCTGATACTGTGGAGtgtgacTACATAAATTTCGAGAAGCGCAGGAGGgaGTATGAGATTCTGTGGCAAATCCGTCAGCTCCAAGCATCTTGCTCTCAGTACACTTTACCAGACCATCCTCAGATTGCAGCCTGGTTACAGTGTCACAGCCTGCTCACAGATCAGGAGAGTTATGAGTTGTCCAGACAGCTGGAGCCTCCACTTGACAGCTGTTCACCGTCCAGCGGTACAGCCTCGAATCACCGTTCACTCACCAAAAGGCTGACTTCcCTCCTGAATGTGACTGACAGCTCCAAAAAGAATGCTGACCAAATTAGTGTCTCATCTTCTGGATCCAGCAGCTCTGAAATGGAGGATCTCTCCACAAATCAGTCATCTCCTCTTGGAGCACAGTCACTCTCAAGCTCCTGCCAAAACATGGCTGACAGcatttcttcctcttctcctaCGGACTCTTCTGGCTCCTCCACCAGCTCCCAGGCCGAACTCATTCTCTCTTCACCGGCCACTTCATCAACTCCATCCAAGCCTGGCCATAAGCGCTCAGTCTCCATGACCTCGCTGCCCCTGTACAACAGGCAGGTGGCCGACTCCTGCATCATTAGGATCAGTGTGGAGAGCGGCAACAATGGCAACATGTACAAGAGCATCCTGCTGACTAGTCAGGAAAAAACAGCCCAGGTGATCGAGAGGGCCCTGCAGAAGCACAACCTGGAGAACGCCAGTGTACAGGACTTCAGTCTCGTCCAGATGTTGGCTCAAGGCAAAGagctTATCATTCCAGACAAAGCCAACGTCTTCTATGCCATGTCTACTTCAGCCAACTATGACTTTGTTTTACGTCGTTGTCCAAAAGGCCAGCGGAAACAACTCACACGCTCAGCATCAATGTCAGCAGGCCGGTCTACGAAATAACAGAGCTCAGGAGAACTCGTGATGAGAAGAAACTGAATTTGCTTAGAAATCGGCACGATACTGAAATGCCACTGAACTTGTTATGGTTTCAGTTTTTATATATGAAATGTACATAGAATATATGTAAATAGTCAAACATATTTATGCTTATTTAATGGTTGCTATTTGCTACCTGACAGATATTTTTCTAATAATGACAATAAGTTAATAACTGCTCACCTTGAACTTAACTGAACACTGATTTCAGGGAGAGTTGAGGCAGGACACATGGTTCTAACCTGCCAGAAGTGTAGAGGCTTTATATTGATAAAATTCTAATAGTGGTATATTGTGTGCACTGGGTTGTAGCAGTAAGATTCCTAATCCCACAAGTCATCTCTGTCTTTGAGAAAAAGTCACAGCGGCTACAGAACCAGTGTAATATGCAGCACAAACACTCATCACATGGCCTGAGTTTCGCTGTCAGTTTCTGTCAAACTGAGCATGACTATCACCTCAACGTTGCAGTCTTTGCATACCAGATTACATAATCAAGAGCTTCATAGTATTGTAGAATTTATAGCCTGTACCATTTTCTCATAAAGCATAATGAATTTACACAATTATCTTCTTTTAGTGTGGACCTGAAATTCATTTCGGTACTACTGAGGCTCTTTCCCACTTACTTCATTTTGCTGATAATTTGATAATTTGCATCCTTTCTGTTTATAAGACTTAGGTGATACTTAAGAGGCTGATAAAAAGCTAGCACATGTCCTGTACTGCAAATATAGTTGAGTGTGTATCACATGTAgacattacattaacatttaatgtcaaatgtcatgtttataccaacaagtttcttttttttaaccacatatCTGATGTATCGTTGATCCTTTCAGTGTCTTTGTAGAGCAACCTGCCTTTCTTATGATCAAATTATATATGGACAGCCATTTCAGCAAGTTCCCACTTCATATCTTGAGAAATCATGACAAAAAGAAGATGTACTGCCTGTCTTTAAAGTAGATATAGGTGACAGAGAAGATCACAATGTTCCTTTGCCATAGCGCAGCACCATGGTGATATCGATTAGGCGTGTAccttttgtgtgcgtgtgtgcatgtgtacgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgggagataAAGGTACTGCACTAACAGGCACAGTGACATTCCACCGTCACACTGCAGAGTGATAGAAGTCTAATCAGCAGTTGCTACAATGTTTAACAATTCCACTGAAATGTCTTGCACTTTCATGCACTTGTTCCTGACTGAGGCTTTAGAGAAAGTCTGATACTACCACTGATATCTATTTATTCTTTAGTGCTTTAAAATAACACATTGAATTTCTGTGCAGTTATTATAGGAGAGATATATTTTCTTGTTCCTAACCACAGATGTATTCTTTGACTCTGCTGTTTAAAGTAGATTTGTTCTTACAAAAGAGAAATATTGTGTAGTATCCAATTCATTATTCTTAGgagaatcagaaacagactttgAGTTTAGTAACATACTTGGAGAAGAAATTATCACACTGATCATTACTGTattatagtgtactgtattttgGACTTATTCCACTCTGCAATCCATAGCATTTCATTGGCTTACTGTAGATACTGCTTATGCATGTACATGTAGCACTTCACTAAAGATTAAAATGAACTTAAACTGTT

Function

symbol description
rgl3 Predicted to enable guanyl-nucleotide exchange factor activity and small GTPase binding activity. Predicted to be involved in positive regulation of GTPase activity and small GTPase mediated signal transduction. Predicted to be located in cytosol.

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026916798.2 False 4218 mRNA 0.44 17 13147303 13169715
XM_034310204.1 True 4254 mRNA 0.44 18 13147303 13169715

Neighbor

gene id symbol gene type direction distance location
LOC113528074 LOC108256459 coding upstream 4926 13110033 ~ 13142377 (+)
syce2 LOC108258127 coding upstream 52623 13083066 ~ 13094680 (+)
farsa farsa,LOC106601350 coding upstream 68630 13065751 ~ 13078673 (+)
ptger1b LOC108257984 coding upstream 104997 13028820 ~ 13042306 (+)
si:ch211-194b1.1 LOC108256185,LOC108236112,LOC103393718,LOC105929962 coding upstream 183529 12939770 ~ 12963774 (+)
plppr2a plppr2a,LOC108274416,LOC108440982,LOC107550254,LOC107715659,LOC107695724,LOC107718583,LOC107661668 coding downstream 104909 13274624 ~ 13313578 (+)
tlcd4b tmem56b,LOC108258030,LOC108440983,LOC102303032,LOC107376175,LOC107718582,LOC107661664,LOC107715658,LOC107695723,LOC107550253 coding downstream 175279 13344994 ~ 13363702 (+)
cnn1b cnn1,cnn1b,LOC107715638,LOC107718633 coding downstream 203521 13373236 ~ 13390147 (+)
tmem205 tmem205 coding downstream 230276 13399991 ~ 13404926 (+)
rab3db rab3d,LOC108440987,LOC107695682 coding downstream 241229 13410944 ~ 13422706 (+)
G210384 NA non-coding upstream 101470 13044990 ~ 13045833 (+)
G210209 NA non-coding upstream 326019 12821076 ~ 12821284 (+)
G210160 NA non-coding upstream 367167 12779249 ~ 12780136 (+)
G210086 NA non-coding upstream 598800 12546433 ~ 12548503 (+)
G209945 NA non-coding upstream 766317 12378946 ~ 12380986 (+)
G210532 NA non-coding downstream 195969 13365684 ~ 13365893 (+)
G210655 NA non-coding downstream 290264 13459979 ~ 13460490 (+)
G210698 NA non-coding downstream 492459 13662174 ~ 13663501 (+)
G210694 LOC108276282 non-coding downstream 495801 13665516 ~ 13669551 (+)
G210719 NA non-coding downstream 525775 13695490 ~ 13695799 (+)
ndufb10 ndufb10 other upstream 772931 12367566 ~ 12374372 (+)
arhgap17b LOC108279379,LOC108432202 other upstream 957233 12158703 ~ 12190070 (+)
LOC113528416 LOC108275780 other upstream 1006932 12135269 ~ 12140371 (+)
tbc1d16 tbc1d16,LOC107559246,LOC107689993,LOC107670685,LOC107562324 other upstream 1061245 12049407 ~ 12086058 (+)
luc7l3 luc7l3,LOC107674472,LOC107726809,LOC107654661 other upstream 1569480 11567119 ~ 11577823 (+)
znf653 znf653,LOC104961106,LOC107553636,LOC103393609 other downstream 265666 13435381 ~ 13445686 (+)
zgc:158403 zgc:158403,LOC108258290,LOC108441004,LOC107718630,LOC107553678,LOC107661656,LOC107695678 other downstream 294370 13464085 ~ 13493942 (+)
socs3a socs3 other downstream 1449489 14619204 ~ 14621788 (+)
LOC117598752 NA other downstream 1818371 14988086 ~ 14991450 (+)
G211913 NA other downstream 2748502 15918217 ~ 15968759 (+)

Expression


Co-expression Network