tbl3 (tbl3)


Basic Information

Item Value
gene id tbl3
gene name tbl3
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 10943238 ~ 10962840 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026916800.2
CTTCGTAGATAACTGATGTACAATagatgtataaatgaataaacaacagtatattaaatataataaaactttaaGCGTGGAATAATTTGTATAACGCCTCGTCAGGAAAGTAAATTGCCTCGTTAAGAAGCGAACGGTTTTTGGTATTTGTGTGACGTCATATTTGTGCGACGCTGCCCAGTCGGAACACATGTACACTGCGCGAGGGAGAATGTGCTCAGTTGAAGTTGTATTATTGTAACttaaaataaattgataaataaataaaactacaaagGTCTGAAAAGGTGTGGCCATGGCAGCCAACACGCTGCGGTTTAAAACAAACTATGCTGTCTCCAGCAAAATCGAGCCGTTCTACAAGGGAGGGAAAGTACAGATAAGCCATGATGAAAAGCACATCTTTTGCACCTCTGGGCCACGACtcaacattttgcagatttccACTGGCAAAATTGTTCACAGTATTGAGCAGgaTGATCAGGAGGACATCACCTCGTTTTCTCTCAGCCCCGATGATGAGATACTGGTGACTGCCAGCAGGGCGCTGCTGCTGAAGCAGTGGGACTGGAAGCAAGAGAAGTGCACTCGCTCATGGAAGGCGATTCACAACGTGCCTGTGGCCAGCATGACGTTCGACTGCACCTCTACTCTTCTGGCAACTGGGGGTTGTGACGGCACTATAAAGCTGTGGGATGTACTCAAACAGTACTGCACACACAATCTGAAAGGTTCATCCGGAGTTGTTCAtttggTGCAGTTCCATCCAGACATCAGCCTGCTGCAGCTCTTCTCTTCCTCTATGGAGTGTGGAATCCGCATTTGGGATCTGCGCACCAGCAAGTGTATTTGCATTCTGGAGAGCCACTTCAGCACAGTCACATCACTGGCCTTTTCTCTCGATGGTCACACTCTGATCAGCTCTGGGCGAGACAAAATCTGCACAGTGTGGGACCTGAAAGAGAGGAAAGTAAAGAGAACCGTTCCTGTGTATGAGgCTGTGGAGGGAGTAGTCATTCTCCCAGAAAATGAGGATTACTCAAATCTTGGTGTGAAAAGTAAAGAGCTACACTTTGTCACTGCTGGCACTAAAGGTGTGCTGAGGGTGTGGGAGTCGAGCTCGGcacggtgtgtgttcacacagaCGCTACCGAGCGCTGCGGTGTCTCAGTCAGTGCAGGAAGACGGGGATCCTCTTAGCTTGCTTTACTGCCTGTTCCTGCCCCTTTGCAACCGTCTGGCTACAGTCACCGCCGAGCACAACATCCTGTTCTACCAGCTGCCCTCTCTCACTGTGCAGCAGCAGTTTGTGGGCTATAATGATGACATCCTGGACGTGAGGTTCCTGGGAAAAGAGGACAGTCACATAGTAGTGGCCACAAACAGCTCACAACTCAAGGTGTTTGAGCTGGCCACCAACAGCTGCCAAATTCTCTACGGACACACAGacacTGTCCTGTCACTGGATGTGTTCAGAAAACGTTGCATGTTTGCAAGCTGTGCCAAGGATAATTCAGTGCGGGTCTGGAAGATGGACCCCATGTCTGGTCATGTACAGTGTGTGGCTCAGGGCCATGGCCACTCCAACGCTGTGGGCTCCATTTCCTGCTCCAGgtTAAAGAAGGCCTTCCTGGTGTCTGGAAGTCAGGACTGCACTATTAAAATATGGGATCTGCCTGATATTCTTCCTGGTCTGGGCGAAGAGCCAGCCCAGCTTACTGCTCGGATCACTGAGAAGGCCCATGATAAAGATGTAAACAGCGTGGCTGTCTCACCCAATGATAAGCTGCTAGCTTCTGGTTCTCAGGACCGCACGGCCAAGCTGTGGTCTCTGACTGACATGAGCCTGCTCGGGGTGTTCCGAGGTCATCGCCGAGGCATCTGGTGTGTGCACTTTTCCCCTGTGGACCAAGTGCTGGCCAGTGCTTCAGCTGATGGTACAATCAAGCTCTGGGGCCTTCATGACTTTAGTTGCCTCAAGACGTTTGAAGGACATGATGCATCTGTGCTGAAGATAATATTTGTCAGCAGAGGCACTCAGATAGTTTCTGGCGGTTCTGATGGCCTTGTGAAGCTCTGGACCATTAAGAccaatgagtgtgtgaagacCTTTGATGCTCACCAGGACAAAGTGTGGGCTCTGCACGGCAACAGCAGCGATGATCTGATAGTGACCGGATCTGCTGACTCCAACATCACTGTGTGGAAGGATGTCACAGAGGAGGAGCTAGCAGAGGAGCAGGCAAAGCAAGAGGATCAGATTCTGAAGCAGCAGGAGTTGTCCAATTTGCTTCATGAGAAGAACTTTTTGAAGGCTCTGGGTATAGCCATCTCACTGGATCAACCTCATACTGTGCTTCGAGTCATCAAAGAAATCCAGCAAGAGGAAGAGGCTGGACAGCATCTGGAGAAAACCATCCTTAGGCTACGGCAAGACCAGAAGGAGTCTCTGCTGCGATACTGTGTGGTGTGGAACACGAACGCACGGAGCTGTCTGAGTGCCCAGGCAGTGTTACAGGTGCTGCTGACTCACCTGAGCCCAGACGAGCTGCTGCAGTTCCAGGGAGCGCGCACTCATCTAGAGGGCCTCATCCCTTATACTGAGAGACACATGCAGAGGATTGGCCGTATGCTCCAGGCCTCCATGTTCCTGGATTACATGTGGCAGAAGATGCGAGTGACGGGAAGCAAAGACAGTGGGGAACTACAGGGAGAAGAGATGGACACCAGTCCTCAGGACATATTCATACTAGACAGGCAGCCAGGGCAGCAGAAACCGAGTAGACAGCGGGAGAACGCCGACAATAGCGATGACGTGGAGGAAGCGGACAGCAGCGAAGAAAACTCAGAGAACAGCGACAATGACAGTGTCAGTGCCTTGAAAGGTGTCAGCACCAAAGAAAGGGGTGTGAACGGGGTCAAAAACAGGGGTCATGTATCCAGTGATGAGAGCTcagatgatgaggatgatgtgGACATTTCCACAGTTGCTCCTGCCAAGGCTGCAGGGGCCACTTCCTGTATTCTGACCAACGCAAGCTGATCACGCTGATCAGTAAGGGATCAAAGTGTCACAGTCTCTGTATACAGTCCTGAATGGTGTGGCTGTGTTGAACGAGAGCAAGCAGGAACCAGGTCTCTCTGTCAACAGCTAGAATTAAGCTGTACGTCATTTAATTGTATGTACTATTCTAAAGGACATGCTTTGCCTTTTTATATCATGTTCCAGAAAGAAGAATCTTGTGCTCTTTATTGTCATAGTCATtgaagattttaaataaattcactgGTTTAAAAAGG

Function

symbol description
tbl3 Predicted to enable U3 snoRNA binding activity. Acts upstream of or within lymphocyte differentiation; regulation of cell cycle process; and thymus development. Predicted to be part of 90S preribosome. Predicted to be active in nucleolus. Is expressed in several structures, including brain; eye; fin bud; gut; and hematopoietic stem cell. Orthologous to human TBL3 (transducin beta like 3).

NR:

description
transducin beta-like protein 3

GO:

id name namespace
GO:0030098 lymphocyte differentiation biological_process
GO:0006364 rRNA processing biological_process
GO:0048538 thymus development biological_process
GO:0010564 regulation of cell cycle process biological_process
GO:0032040 small-subunit processome cellular_component

KEGG:

id description
K14555 UTP13, TBL3; U3 small nucleolar RNA-associated protein 13

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026916800.2 True 3300 mRNA 0.49 23 10943238 10962840

Neighbor

gene id symbol gene type direction distance location
LOC113527942 tom1l2 coding downstream 44698 10872034 ~ 10898540 (-)
srebf1 srebf1,LOC107691218 coding downstream 74154 10847701 ~ 10869084 (-)
nptx2a nptx2,LOC108275595,LOC107665931,LOC107724745,LOC107713953 coding downstream 385438 10546321 ~ 10557800 (-)
baiap2l1b LOC108276911,LOC108412765 coding downstream 415952 10485735 ~ 10527286 (-)
pvalb5 LOC108278987,LOC108412247 coding downstream 516010 10420040 ~ 10427228 (-)
rcvrna LOC108260894,LOC108412638,LOC107583783,LOC107725264,LOC107690016,LOC107555668,LOC107755173 coding upstream 46447 11009287 ~ 11011550 (-)
LOC113528015 NA coding upstream 60832 11023672 ~ 11025804 (-)
baiap2a LOC108277336,LOC108432239,LOC107711237,LOC107672452,LOC107670476 coding upstream 111677 11074517 ~ 11145832 (-)
LOC113528317 chmp6,LOC108277388,LOC108432238,LOC106606311,LOC105939499 coding upstream 184554 11147394 ~ 11152163 (-)
ttyh2l LOC108277373,LOC108432236 coding upstream 192075 11154915 ~ 11191515 (-)
G208998 NA non-coding downstream 309088 10633535 ~ 10634150 (-)
G208980 NA non-coding downstream 424291 10518342 ~ 10518947 (-)
G208964 lmtk2 non-coding downstream 492698 10447736 ~ 10450540 (-)
G208951 NA non-coding downstream 601016 10341911 ~ 10342222 (-)
G208771 NA non-coding downstream 652353 10221710 ~ 10290885 (-)
G209189 NA non-coding upstream 126173 11089013 ~ 11144984 (-)
LOC113528410 NA non-coding upstream 255819 11218659 ~ 11221378 (-)
G209529 NA non-coding upstream 426120 11388960 ~ 11389231 (-)
G209538 NA non-coding upstream 437882 11400722 ~ 11401423 (-)
G209541 LOC108256081 non-coding upstream 440238 11403078 ~ 11476796 (-)
tecpr1b LOC108276900 other downstream 472720 10450724 ~ 10470518 (-)
hoxb8a hoxb8a,LOC108278530,LOC108413053,LOC103044850,LOC107582957,LOC107662386,LOC107585089 other downstream 1210672 9729851 ~ 9732566 (-)
copz2 copz2,LOC108260256,LOC108413159,LOC107740614,LOC107662379,LOC107710054,LOC107585036,LOC107687783,LOC105013247,LOC108246742,LOC106527321,LOC106912034 other downstream 1468760 9464331 ~ 9474478 (-)
prr15la LOC108273894,LOC108412372 other downstream 1523654 9409804 ~ 9419584 (-)
dnal4a dnal4,LOC108261343,LOC108412416,LOC108436609,LOC106591471 other downstream 1739598 9196496 ~ 9203640 (-)
hmox1a hmox1,LOC108432221 other upstream 679317 11642157 ~ 11647997 (-)
zgc:162612 foxd1,LOC108278341,LOC107757501 other upstream 737009 11699849 ~ 11701172 (-)
LOC113528332 hs3st6,LOC102795972 other upstream 1334936 12297776 ~ 12315498 (-)
msrb1a msrb1 other upstream 1371014 12333854 ~ 12339269 (-)
tom1 LOC108260160 other upstream 1583493 12546333 ~ 12559213 (-)

Expression


Co-expression Network