tlr1 (LOC108258270)


Basic Information

Item Value
gene id tlr1
gene name LOC108258270
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 21181413 ~ 21184850 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026916808.2
CTTTACTAAAATGACATGAGATGCGCTACTGTTAGTCACTGTCGCCCATTCTGCAGAACGTTCAGCGGAACAGATAACGCAGGATTCTTCCCGATAATACTTGCACTAATGCAGGCTCAAGGGCTCCCCTGGTTATCAGTGGTGGTACTCCTGGTGTCTTTGCCACATTCCTTCTTGCTGGACATGGAGACATTTATTCTTGACTACTCTTCCAGAAACCTTTCTGCTGTTCCCCCCGATCTCCCACCATCTATTCAATGCCTAGATCTCTCTCAGAATCGAATTTTGACCTTGAACAAACATGACTTCCATAGAACACCCAGGCTCCATTTTCTCAATCTCTCCTGGAACATTCTGGAAGATATACACCAAGACACATTTATTTCCACTCCTCTTCTGGTAACACTGGATTTGTCCCACAACAGACTGAAAAAGCTGTCCCACCAACAATACCTGCTGCAAGCACAAAACCTACAGTACTTGGACTTGTCATCCAACTTGTTTGCAGTAATGGCACTAGGGGGTGAGTTTCCCAAACTCACAAAACTTAAGTGGCTTGGTTTGAGTGCCAGGACTATTCAGAACAACAACTTTGCGAACATCTCTGACCTCCATCTCCAAACTCTCTTCATTCAGGCTCAGAATTTGATGGGGTATGAAAACGGAAGTCTCACGGGTGCAAAGGCAGACAAAATTGTTGTCCTAATGTCTAATAATGTATTTGATCTCCCAGTAATTGCTGACGCTTTGGCATCCTTTAAAGAAGTAGAGCTGAGGGGGTTACACGATCCAGAGGACTTCCTTGGAATACTTGCGACATGCCAAGTACGCATTCAAACAGTTAATTTACACTTATCTTCTGTTTGGAGTACCTGGAAGGTAATAACAGCCCTTACCAACAGGACCTTAATGTCATCTATCCGCCAGTTTAGTTTGTCTAATCTAACCCTTCATGATATGATGGGACGTTATTTTGTGGTCCAAGGCTACTCTTTAGATTCTTTCAGTATTAGACAGGCATCAGTGACTGTGTTCCTTTTTGATCAGCAGAGTCTATACGACTTCATCATCAGTATACCTGCAAGAAATCTAACTTTTGCCCAGACACCAATAGTCCATATGACCTGCCCAAAGGTTGTTAGCATGATACAGATGCTTGATTTATCTGGCTGTGTCCTAACTGAAAAAGTCTTCAAAGGTCTCCATGGGGAATGTAACACTTTGATCAATCTGGAGGTATTGGTCTTGAAGGGCAATAACCTTAGACAGTTGATGCCACTGACTTCAAGAGTTCAACTAATGAGCTCTTTAAGACATGTGGACTTTAGCCAGAACTCACTGACATATGAGGAAACTCAGGGTGGATGCACTTGGCCTTCTAAAATCACCCACTTGGATTTATCTTTTAATGAGTTTGACCAGACTGTTTTTAAGTGCTTGCCGAATGCTCTAGTCAATCTCAACCTCCAGAACAACCATATCAGTGCAATTCCAGCAAATATTTCTGGTCTGGACTCTCTCAAAATTCTAGATCTTACGGCAAATCGTCTGCTGGATCTCCCAGACTGCCTGGGGTATCCAAAATTGCAGAAACTTGTGCTACGTGGCAATTTCCTTCATGCACCATCAACAGGCTCTCTCAAGACCTGTTCACACCTAACTGTAGTGGATATCAGTATGAATCCCTACATCTGTACCTGCCCTTTGAGAGAATTCACCAACCTTATTGACGACAAGGGTACACTGGGTGGCTCAAATTCTTGGAAGAACCAAAGGATTACCGTTGCTCATTGGCCAGATGGGTATCAATGTAGTTACCCGGAGTACTGGAGAAAAGCAATGCTTAAAAACTTCAGTCTGCTTGAGATCACCTGCAACGCCGGACTGCTGGCAGTAACCATTTTGCTCCCAGCCATAATTTTGGTCATTACTGTAGGAATTCTATGCCAACAACTAGATCTTCCTTGGTATATGGGCATGATTTGGAAATGGACTCGTGCAAAGCACCGTGCCCGAAGTTCCCAGCAACGACCAGAAGATCTTGAAGGAGTACGCTACCATGCTTTCATTTCCTATAGCCAAAGAAATGCCAACTGGGTTATAGATCAACTCTTGCCCAAACTTGAAGGTGAGGACTCTACGACCCCAAATGGACTGAGGGTTTGTCACCATGAGCGAGACTTCATCCCGGGAAGGCCAATCTTAGACAACATCCTCCGGTGCATAGAACAAAGTAGATGCTGCGTCTTTGTGCTGTCCTCTCACTTTGTGCAGAGTGACTGGTGTCACTATGAGCTGTACTTTGCAAGCCACCAGTGGATAACACGAGGTATGGACAATATCATTCTCATTCTGCTAGAGCCATTGCCTACATATCTTATACCCTCTAAGTATCACCAGCTAAAGGCAATGATGGCCAGACGCACTTACTTAGAGTGGCCCCAGGACAAAGCTAAACAGAGAATGTTTTGGGCAAACCTTCGTGCGGCACTGCAAGCGGATCTACCCGATTCTGTTGAGAGAGAATGGGAATGAGAGGACAAAAGAATTC

Function

NR:

description
toll-like receptor 1 protein-like protein

GO:

id name namespace
GO:0002224 toll-like receptor signaling pathway biological_process
GO:0016020 membrane cellular_component

KEGG:

id description
K05398 TLR1, CD281; toll-like receptor 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026916808.2 True 2551 mRNA 0.44 2 21181413 21184850

Neighbor

gene id symbol gene type direction distance location
LOC113528291 LOC108261075,LOC108434533 coding upstream 99399 21047261 ~ 21082014 (+)
dele1 kiaa0141 coding upstream 137106 21035260 ~ 21044307 (+)
ankrd50 ankrd50 coding upstream 402181 20746708 ~ 20779232 (+)
LOC113528524 LOC108258618 coding upstream 736467 20439441 ~ 20444946 (+)
leprotl1 leprotl1,LOC103152176 coding upstream 742545 20430641 ~ 20438868 (+)
f8 LOC108279904 coding downstream 21609 21206459 ~ 21226848 (+)
LOC113527948 NA coding downstream 103630 21288480 ~ 21293794 (+)
sec24b sec24b,LOC108434542,LOC107596339,LOC107731363 coding downstream 116793 21301643 ~ 21328754 (+)
LOC113527892 NA coding downstream 196930 21381780 ~ 21387087 (+)
LOC113527856 NA coding downstream 206053 21390903 ~ 21402724 (+)
G214723 NA non-coding upstream 18109 21162900 ~ 21163304 (+)
G214694 NA non-coding upstream 23325 21144820 ~ 21158088 (+)
G214548 NA non-coding upstream 254735 20908828 ~ 20926678 (+)
LOC117598998 NA non-coding upstream 328819 20845141 ~ 20852594 (+)
G214369 NA non-coding upstream 709649 20471529 ~ 20471764 (+)
G214731 NA non-coding downstream 416 21185266 ~ 21186303 (+)
G214753 NA non-coding downstream 13692 21198542 ~ 21244785 (+)
LOC117598756 NA non-coding downstream 172000 21356850 ~ 21359059 (+)
G214798 NA non-coding downstream 183174 21368024 ~ 21368228 (+)
G214800 NA non-coding downstream 221523 21406373 ~ 21464629 (+)
nudt6 nudt6 other upstream 157326 21011774 ~ 21024087 (+)
LOC113528520 znf518b other upstream 1008061 20022509 ~ 20173352 (+)
G214015 lyar other upstream 1200033 19978314 ~ 19981380 (+)
LOC113528304 evc2 other upstream 1228127 19933824 ~ 19953286 (+)
LOC113528458 LOC108275785 other upstream 1269681 19873076 ~ 19911732 (+)
hopx hopx other downstream 155566 21340416 ~ 21349086 (+)
LOC113540568 LOC108280981,LOC108280985,LOC108277574,LOC108277545,LOC108280967 other downstream 297172 21482022 ~ 21513040 (+)
LOC113540569 LOC108280981,LOC108280985,LOC108277545,LOC108277574,LOC108280967 other downstream 329723 21514573 ~ 21565376 (+)
G215015 LOC108275153 other downstream 461230 21646080 ~ 21649152 (+)
G215022 NA other downstream 478234 21663084 ~ 22000809 (+)

Expression


Co-expression Network