LOC113528321 (fbxl12)


Basic Information

Item Value
gene id LOC113528321
gene name fbxl12
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 20426759 ~ 20430515 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026916811.2
TAATCATTCTGTTACACTCTGCTGTCTGTTCTTGTTTAgataaaaatgagcaaactgtaattttaaaaaaataataattaaaatatatatatagtacccTGCTTTTGTGATATATTATACTTCCGGTCGCAGAGGGGTTTGTTTACTAAAATGGCGGGTATCAGAACTTGCACTCTGGACTGTTTCcctgaaaatatattaattgaAATTTTATCCTACTTAAATGTCCGAGAGCTCATTCGCAATGGAAgAGTATGTAAGCGTTGGAGAGCTTTAATAAAAGACCAGAGGCTCTGGAGAACTGTGGACCTTTCCACATGGAAACGGgtgAGCTCACGGGTGCTGTGGACGTTATTGCGACAGTATCTGGGACGTGGTCTATGTTCTCTACACCTGCGCGGGTTGCTGCATAGTGCACGCGGAGGGTCGTTCCTCTCTGAGCCGTGGCTGCAGACTCTGAGCTCAAAATGCCCTCGACTCCGCAGACTCACTCTTACTCACACGGACCTGCGTGGCCTGCACAGCTGCTCCTTATTACCTCCTAGCTTACAGGTGCTAGAACTGCGCAGCTGCGAACTCCCCCCCGGCTTTTTTACCCAGAATCCCTCGAAGCCGGTGCAAACTGACCAGAATGGCTCAGGCAAAGAATCTCAGACCTCTTCCTGTAGTTGTGTTATCGAAGCACTAATTCTGGACAACGTGCCATCATTCACGGACCAGCACCTAAAGAGTCTGAGCTTGTGGGAGCGCCTGCGGCGTCTGGAGCTTCGCGACGTGTTGCGTGTGACAGTGGCAGGACTGAAGGGCTGCGCTCCACCTGGCCCACATGCGCtaaaacacctcacacacctggAGCTGGAGGGGTTCAGCCGGCAGCAGATGGCAGCGCTGGGCCTGGCAGAGGGTTGGGCAGGGCTGGAACGGCTAACACTCGGCGGGCGAGAGGTTGCACCTGGTCTGCTCTGCCTCAACCGCCTGGTCGGGCTGCACTGGCTGCGCCTACGTGGCTGCAGACTCACGGAGACATTGGTGCTGCGCAGCTGTGGTGCGCTGAAGGAGCTGCGCATGCTAGAGTTCCTGCAGGTGGAGTTTGCAatagaggcagagagaaaagacagcaaGAGGGATGAAAAGAGTGAAAATGACCCCATGCCTGGGCTCAGACAAGCATTGTCCAACTTGCTGCCCAAGTGCAGCGTGCTGTTCACGCAGTGTACCGTTATACTTGGTGCGGACTGACACGTGGGGATGGGCGATATGATAATGACTGTTACTGTAACCATGACAAGCTAGAAGATATGTTTTTTAAAGTAGCATCAGTATGTTTAGACCAGTGACCACCTTGCAAAATTCATGCAGTGGATTTCGGTCGATCAGAGAAAGCCTATTAACAAACAACGTTATACACTCAAATCTGCCTAGCAACAAGTAGTGGACGCTAGACGTATTTAGACCAATCACAGAAAGCCCACTAACAACCAGTGCCGTTATACACTCAAATCTTCCTAGCAACAAGTAGCCAATTGGATGCTAGATGTATTTAGACCAATAACATAAAGCCTACTAACAGCCAGTGCCGTTATACAGTCAAATCTGCCTAGCAACAAGTACAAAATTGGATGCTAGATGTGTTTAGACCAATCACAGAAAGCCCACTAACAACCAATGCCGTTATACACTCAAATCTGCCTAGCAACAAGTAGCCAATTGGATGCTAGCAACTTagacattattttatatattttggagCAATCTTTTGCTTTTAGTTAGCAATAAGTTTTCTTAGAAAAGAGTATTTTGGTGACTGTTGAATGAATTGTCCATAGGTTTTTCTACATTACACTGCTGCTTTCTTGTGTGTTGTGTCTCTTCCAACTTGTAAGGCAAACCTCAGAAGAAACAAAATACCGATACTACGTGAAAATGAAACTGTACTGTAATAAAAGTGATAGTTTGG

Function

symbol description
fbxl12 Predicted to be involved in several processes, including G2/M transition of mitotic cell cycle; SCF-dependent proteasomal ubiquitin-dependent protein catabolic process; and entrainment of circadian clock by photoperiod. Predicted to act upstream of or within ubiquitin-dependent protein catabolic process. Predicted to be located in cytoplasm. Predicted to be part of SCF ubiquitin ligase complex. Predicted to be active in cytosol and nucleus.

GO: NA

KEGG:

id description
K10278 FBXL12; F-box and leucine-rich repeat protein 12

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026916811.2 True 1957 mRNA 0.47 4 20426759 20430515

Neighbor

gene id symbol gene type direction distance location
tmem107 tmem107,LOC108274527 coding downstream 2087 20419758 ~ 20424672 (-)
aurkb aurkb,plk4,LOC108431899,LOC107704466,LOC107712916,LOC107705065,LOC105908766 coding downstream 8378 20414100 ~ 20418381 (-)
trnal-aag_9 NA coding downstream 13829 20412849 ~ 20412930 (-)
bod1l1 bod1l1,LOC107705061 coding downstream 14631 20400480 ~ 20412128 (-)
LOC117598840 bod1l1 coding downstream 26284 20394684 ~ 20400475 (-)
LOC113528637 fat4,LOC107717300,LOC107694441 coding upstream 177109 20607624 ~ 20697160 (-)
spata5 spata5 coding upstream 474009 20904524 ~ 21003477 (-)
LOC113528290 LOC108273900 coding upstream 651504 21082019 ~ 21143863 (-)
LOC113528020 LOC108274616,LOC107676766,LOC108242416,LOC103365636,LOC107660492,LOC107088227 coding upstream 716551 21147066 ~ 21155800 (-)
ube2ka ube2kb,ube2k,LOC108261162,LOC107750257,LOC107559588,LOC107684862,LOC100708886,LOC105026169 coding upstream 726965 21157480 ~ 21163061 (-)
G214159 NA non-coding downstream 370615 20020552 ~ 20056144 (-)
G213879 NA non-coding downstream 762997 19663337 ~ 19663762 (-)
G213716 tnrc6a non-coding downstream 1004344 19417184 ~ 19422415 (-)
G213549 NA non-coding downstream 1353774 19023758 ~ 19072985 (-)
G213407 NA non-coding downstream 1577612 18792435 ~ 18849147 (-)
G214325 NA non-coding upstream 5537 20436052 ~ 20438834 (-)
G214331 NA non-coding upstream 15008 20445523 ~ 20445748 (-)
G214493 NA non-coding upstream 348250 20778765 ~ 20781702 (-)
G214526 NA non-coding upstream 410916 20841431 ~ 20841634 (-)
G214626 NA non-coding upstream 472583 20903098 ~ 20903837 (-)
hs3st1 hs3st1 other downstream 213130 20205339 ~ 20213629 (-)
slc2a9l2 slc2a9 other downstream 288546 20039787 ~ 20138213 (-)
lyar lyar other downstream 442610 19940354 ~ 19984149 (-)
rbbp6 rbbp6 other downstream 978200 19429217 ~ 19448559 (-)
si:dkey-204f11.64 LOC108274053 other downstream 1599025 18823471 ~ 18827734 (-)
spry1 spry1 other upstream 469542 20900057 ~ 20905271 (-)
fgf2 fgf2,LOC107717315 other upstream 583924 21014439 ~ 21028081 (-)
slc16a2 LOC108279893,LOC107596364 other upstream 806287 21236802 ~ 21272507 (-)
LOC113528016 thegl other upstream 921766 21352281 ~ 21359190 (-)
G215187 NA other upstream 1245756 21676271 ~ 22269092 (-)

Expression


Co-expression Network