LOC113528323 (LOC108258986)


Basic Information

Item Value
gene id LOC113528323
gene name LOC108258986
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 12340950 ~ 12356527 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026916814.2
GCTACTGTTTATAATACTGCAGAGAGCGAGATGGGACACTTTACACTCGTGCTTGCATCCCGaccaaaacaggaagtaaataaaGAGCTCGCGATGATCCGAATAGTCGCGAGATAACGTCCTCTAGGACAGTCGGTGTCTCGTTGAGGGAAACGCGCGCGCGAGCTGAAACCGGACGGTTCTCGCTTAGTGTGATTAACACTGACTGAAAGCCAAGTGATCAGCTGACTCCTGGAGTCTAACTGGACTCCAGTGAACActgaataaagtgtgtgtgtgtgtgtgtgtgtgtgtgcagctgaaTTTGGTTGGTATGCCTGCGCTCACGTGCACAGGGATGCTGCAGCAGAGGACCTTAGTGCTCAAAATGACTGTACTTCAGAAACACACTGTCCTCTTGCTTCTTCTGACACCTGTGAAGATGATAACAAAATAAGGATTCAAAGGAGATTTTGGTCACTACCTGGCTCTTGCCCGACGTGATGGTGATATTGAGCTGTGCATTTGCCATTGGTGGAGAGAATGACCTTGTCTAGAGACTACATCTCCAGCCCTATGGCCACCAGATCAGCATCAGCccaacacatgcatacacactaaATACAATCATGGAAGACAGTGAGCTCTTCCTGGAACCTGATAAGAAGGGTCCCACCATCTTCTCCAAAGAGAAACCTCATGGCAGAGGGAGCAATCAACCAGCTCTCCACTCTTTTGCTTTCCAATTTCCACTCTCTTCTTCTACCCCCATTGCCCTTGGTGAGCTCTCAACCTTGACCCTTGGCACCACTGCTGCTCCCTCCTCCATGAGCTGTATCATCAAATCCTCTTCAGTTTCCTCTGATAAAGAGTCTAAAGAGTCTGCCTTGCTAAGGCCCAATCCCATGCTCAGCCTTGTTGAGTCTCTCTCCATGGAGATCTCACACAGACAGTCTGAATTCTGCCTCTCCAACTCTGACTCCAAGCTCCATCTGCAACCTTGGAAACAACTAGGCCAACTGCCCAAGGTCCAGGATGCAGAACCCTTGCCCAGGACGGTGCCATCTTCTCCCACAGAGTCCCGTACAAACCTGATTAGCTCTGGCAGCTTGCTGATAGCTGAACTGGAGGACACACGCCGTAAGCTGTCTGAAGCCATGCAGGAGCCACTTAGTAAGCTCAGTAAGATTATTGGAGAGGACAGTGACAGCCCTAAGTCACAGAAAGGTGACTTGACTGCATCCCAAGGTGGTCCTGCAGGAGGTATACCAATTCAGAGTGAGGATGGAGCTGGAGGATGGCACAAAGAGAATGGGAGTCCACTTGGAGTGTGTGAAACCCCACTACGGAAACCCAGGAGAGAGCTGACACCAAGCTTTACTTCTGAGATCTGCTGCAAGCTGGGCAGCGAGAGCAGCCGCTATGAGGTCTGCACTTACGGTGATGTCATGCAAGTGCTGGAAATTCAGGAGCATTCTGACAGAACAGAGGTCAAACATCCAGAGCAGAAGGGTGTGAAAGCACCACCTGCAATGTATACCACCTCCTCAGACCCAGGCAGATGGCTGGTATGTGTGGGTTTGCTGGCTTACAGCTTCTTTGTGTTACCACTGTCTTCCTACATGACAGGACTGTCTCTAGGACTGGCATGTGGATTCATGCTGGGCCTGACAGTGGTAATGATGCTAGCACCACAGCGACCTGCTGCTACTGGGATGCCTATCTCTTCACCCACTGACAGCCTGCTGATGGAGTCCATAGGCACAGcactgagagagacagcaaaaagaGAGCTTCAGGGCTGGATGAACGAGATGTACAGCTATGACCCAGAGACCTATCACCCTTCTCTGTGCCACTCTGTCTATGTCACTTTGGATAGATGCCATCTACGCCTGGCATACCCAAGTGTCAACATCCCACGGCAAGCCACCTTCAAAGAGCCCACCCATGACACTACATTTGTGCGCTCACGATGTTTCAAGCTATCCAATAGCAAGGTGTCTCTGCTGCCGGCAATCTTGgcaaaaaagagagtctggaaTAGGAAATATCCCATCTGCATAATATTGGCTGAAGAAGAGCAGTGTGTAGAAGAAGAGCAAGTCAGTGATGCAGCAGAGGCAAAGAGcgaaaaagcagaaaaactcAAGCAGGTGAAGAAGGAAGCAGACCAGACCACCACTCTGTACCTGTTTGGGCgtacagggagagagaaagaggagtggTATCAGCACTTCCTGTTAGCTTCCAAAACCAAGATCTGCCGTGAAGAGTCAAAGCCAGaGGTGTGTAGTGCTGGAGGCTCCAGTCAGGGCAGCAGTGATGACCTGGCCTTGATGCTGGGTCTAAGGGAGCTGGCTGgctcagtgagagagaagaTTCTGCTGGACTACAACTCCTACATGgctcacttcatcacaccagagAGCTGTAGCCTCACGCCCAGCCCCCGTCCCAGTGAGCCAGGCAGTCCTACTGAAACAAAGAGGTTCTCCAGCGATCCAGTAGCAGGGTGCGGAGATCCGGCCTGGATCAATGCCGTGATTGGGAGGATCTTTTGGGATTTCTTGCATGAGAAGTACTGGGTTGACCAGGTGGCCCACAAGATCCAGAAGAAGCTGAGTAAGATTAGGTTGCCGTACTTTATGAATGAGCTGACTCTGTCTGAACTAGACTTGGGCACATGCATCCCGCAAGTGTTGAGTACCTCCAGACCTTCAGTGGATCACAGAGgcctgtggCTGGAGCTGGAGGTGTTGTATACCGGATCTCTGCACATGACTCTGGAGACTAAGATGAATCTGTGCAAGCTCGGCCGAGAGAGCTGCTCTGAGGCTTATAGCATCACTGAGCCCAGCAGAAGTGTGGGcacAAGGCCCAGGGTGTGTATCATTGCAGACAGCGATGAAGAGTCATCCAGCGCAGGCTCATCTGACGAAGAGGAACTGATGCCCTCTGAGCCCCAAGGACCTCTGGCAGATAAGAGTATACACTCTGGGACTGAGGGGCATGGTGGAAGCAGCACAAGTAGGAAAATTCTGCGTTTTGTGGACAAGATTGCCAAATCAAAGTATTTCCAGAAAGCCACAGAAAACGAGTAcatcaaaaagaaaatcacagaaGTCTCCAATACTCCCCTGCTGCTTAGCGTTGAAGTGCTGGAACTCTCAGGAACTCTAGCTGTCAACATCCCACCACCCCCTACTGACCGAATATGGTACAGTTTCCGTGTTCCACCAAGGCTAGATCTGCGTGTGAAGCCCATGTTGGGTGAAAGAGAAGTCACATTCACTCATGTCACTGAATGGATAGAGAGGAAACTGCAGTGTGAATTTCAGAAAATTTTTGTAATGCCCAACATGGACGACCTATACCTGCCTCTTATGTCTTCTGGGATGGACAATACTGACATGTCCCAGAATTTCTCAGGGGAAAGCCAGGATCAACAGGAGCGCAGGAGCTCAGAATAAGACACGGACGCAAAggacatggaggaaaaaaagtgaaaatgtgctAATTGTAACATTTGTGTGCCATATGTACAATATTCCAGGCACGTACCAGGAGAAATTGCTGCAGCTGTACTTGAACTACACACAGTTTTGATGGAAAatgattgtgattgtgtgtggGAAAAATATGAGCCATGTTGCAGTCAGAGGCCCATGAATTTCTAAGGCAAACTTTTACTAATCAGATGTATAAGAAACTGCTGAATGCAGAATGCTCATCTTTTCAAAAATAGTATTTGACCATAAATTGTCACCACAATAATTTAGACTCTAGAGCCAGGAATAAAAGAAAGGCTATTACTACCTGTGTCACACATCTAACATCCTTTCATATTTGTTTCCTTTTGACAGATTACCATAGCACTGAGTCCacattttttcctaaaatatattacatatttttatatgtgaGTCGGTTACAtttctgtatgtatttgtaACATGGTATTCATAGCATAACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026916814.2 True 3955 mRNA 0.48 13 12340950 12356527

Neighbor

gene id symbol gene type direction distance location
fahd1 fahd1 coding upstream 52498 12287220 ~ 12288452 (+)
narfl narfl,LOC106606697 coding upstream 68859 12264705 ~ 12272091 (+)
cbx8a cbx8,LOC108261002,LOC107085518 coding upstream 208653 12129591 ~ 12132297 (+)
cbx4 cbx4,LOC108260285 coding upstream 218814 12116439 ~ 12122136 (+)
gaa gaa,LOC106601771 coding upstream 295446 12033886 ~ 12045504 (+)
kdelr2a erd22,kdelr2a,LOC108432184,LOC107670681,LOC107555655,LOC107728665 coding downstream 29448 12385975 ~ 12389435 (+)
spag9a LOC108257234,LOC108432181 coding downstream 39977 12396504 ~ 12435649 (+)
tob1a tob1,LOC108432179,LOC107690006,LOC107555665,LOC104949960,LOC107758110 coding downstream 130750 12487277 ~ 12490947 (+)
ntn1b ntn1,LOC107728387,LOC107583316,LOC107672692,LOC107719327 coding downstream 259757 12616284 ~ 12661616 (+)
usp43b usp43,LOC108432083,LOC107583297 coding downstream 338842 12695369 ~ 12775815 (+)
G209897 grid2ipa,LOC107758114,LOC107583579,LOC107559228,LOC107689997,LOC107728614,LOC107670677 non-coding upstream 108299 12232321 ~ 12232651 (+)
G209894 NA non-coding upstream 121397 12219301 ~ 12219553 (+)
G209887 NA non-coding upstream 131826 12208886 ~ 12209124 (+)
G209886 NA non-coding upstream 132464 12208236 ~ 12208486 (+)
G209884 NA non-coding upstream 138673 12201238 ~ 12202277 (+)
G209943 NA non-coding downstream 19380 12375907 ~ 12378084 (+)
G209944 NA non-coding downstream 21632 12378159 ~ 12378413 (+)
G209945 NA non-coding downstream 22419 12378946 ~ 12380986 (+)
G210086 NA non-coding downstream 189906 12546433 ~ 12548503 (+)
G210160 NA non-coding downstream 422722 12779249 ~ 12780136 (+)
arhgap17b LOC108279379,LOC108432202 other upstream 150880 12158703 ~ 12190070 (+)
LOC113528416 LOC108275780 other upstream 200579 12135269 ~ 12140371 (+)
tbc1d16 tbc1d16,LOC107559246,LOC107689993,LOC107670685,LOC107562324 other upstream 254892 12049407 ~ 12086058 (+)
luc7l3 luc7l3,LOC107674472,LOC107726809,LOC107654661 other upstream 763127 11567119 ~ 11577823 (+)
cdc42ep4a LOC108256079,LOC108432235,LOC103033379 other upstream 952930 11280080 ~ 11388020 (+)
ndufb10 ndufb10 other downstream 11039 12367566 ~ 12374372 (+)
znf653 znf653,LOC104961106,LOC107553636,LOC103393609 other downstream 1078854 13435381 ~ 13445686 (+)
zgc:158403 zgc:158403,LOC108258290,LOC108441004,LOC107718630,LOC107553678,LOC107661656,LOC107695678 other downstream 1107558 13464085 ~ 13493942 (+)
socs3a socs3 other downstream 2262677 14619204 ~ 14621788 (+)
LOC117598752 NA other downstream 2631559 14988086 ~ 14991450 (+)

Expression


Co-expression Network