slc5a11 (slc5a11,LOC107670676)


Basic Information

Item Value
gene id slc5a11
gene name slc5a11,LOC107670676
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 12190072 ~ 12200474 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026916823.2
TTATATAAGGAGTGGAAGGAATCTGGAGTTTGATCCCTTGGTCATAGGGGCAGATTTTAGACACCTGTCACAATATTACAAATGTCTGAATGGTGAGAGCTTCTGACTGCGGCGCTATGAAGCTGTAGCTCCACAATCAGGAAAGAAAACTCGTTCTCGTGGGAAATACACTTGAACTTTGACCTCATGGCTAGTACTGAGATCCCCAGTGTCTTCCCTACACCCACGGAAGGGGTCTCAAACcgaacacacactctgtctgcaGCTGATATAGCGGTGCTTGTTGTGTATTTCATACTGATCCTGGCAGTAGGACTATGGTCTATGTGGAAAACCAAGAGAAGCACAGTGAATGGATATTTCCTAGCAGGGAAAAACATGACCTGGTGGCCGGTGGGTACGTCTCTATTTGCTAGTAACGTGGGCAGCGGTCACTTCATTGGTCTGGCTGGATCAGCAGCCGCCGCAGGCATCGCCCCCACTGCATATGAGTGGAATGGTATGCTGGTGGTTCTGCTCCTAGGCTGGTTCTTCCTCCCTATCTACATAGCTTCTGGGGTGACAACTATGCCGGAATATCTTCAGAAGAGATTTGGAGGCAAAAGAATACAGATATTTATtgccattttgtcattatttatttacatcttCACAAAAATATCGGTGGATATGTATGCTGGAGCTGTGTTCATACAGCAGGCTCTGGGCTGGAATATTTATCTTGCTGTCATTCTTCTCCTCATCATTACTGCTCTCTATACTGTAGCAGGTGGTCTTGCAGCCGTCATCTACACAGATGCAGCTCAGACTCTCATCATGCTGATTGGGGCCCTGACACTTATGGGCTACAGTTTTGTGGAGGTCGGGGGCTTTCAGGCCATTTTTGATGGCTACAGCAATGCCATTCCCTCCATTAGAGTCCCAAACACCACCTGCGGGATCCCTCGCGAGGACGCCTTCCACATTTTCCGGGAtcctgtgacctctgaccttccCTGGCCAGGGGTGCTGCTGGGAATGACAGTCCCCTCCATATGGTACTGGTGTTCGGACCAGgttatAGTGCAGCGCTCACTGGCTGCTAAGAACCTGCTGCATGCTAAAGGAGGCTCTTTGCTGGCTTCCTACCTTAAGGTCCTGCCCTTCTTCATGATGGTGCTGCCAGGCATGATCAGCCGAATCCTCTATCCAGATGAGGTTGGCTGTGCAGACCCTGAAGTGTGTCAGAAGGTTTGTGGGAATTCTGTAGGCTGCTCTGACATCGCCTATGCCAAACTGGTCATGGAACTCCTTCCTTCAGGTCTGCGGGGTCTGATGATGGCCGTAATGCTAGCTGCTCTCATGTCTTCCCTGACCTCCATCTTTAACAGCTCCAGCACTCTGTTCACCATGGACTTATGGAGATATTTCCGCCGTACTGCCACAGAGTGGGAGCTCATGATCGTAGGCAGAGTGTTTGTCCTGGTCTTGGTGGTGGTGTCCGTGCTATGGATCCCCCTGGTTCAGGCCAGTCAAGGTGGCCAGCTCTTCATCTACATCCAGTCTATCAGCAGCTACATGCAGCCGCCTGTCTCTGTGGTGTTCATGGCAGGCTGCTTCTGGAGAAGGACAAGCGAGaagGGGGCATTCTGGGGTTTAGTGCTGGGGCTGCTGGTTGGCCTTGTGAGGATGATTCTGGATTTCATCTACCCTGTACCACAGTGCTACGAGACAGACACCAGGCCTGATATTATCAAATATGTGCACTATCTGTATTTCTCCATCATCCTCTCCCTGTTCACACTtgctgtggtggtgtgtgtcaGCTTGGCCACGGAGAAACCCACAGAAGAACAGGTAAGTCGGCTGACGTGGTTCACAAGGTTTGATCCTGTGAAGAGCAGTGAGGCCAGTAAAGAAGCTGGAACCCTTACTATCGATAACGGCTTACATCAGGAAAAGGAGAAGAGTCATGGAAATGTGACAGAGAACACAAATGGATCGAGTACACGCCATGCTGAGAAACCCTCTAAGCTGAAGTCCACTCTGCTCTGGCTGTGTGGGATGGAGCAGGATTCAGAAGGAGAGCGGCCCCCTCCATCACCGCCTGAGGCTGTCATGTGCTCCCTCGAGGAAGAGCCCTGTCTGAGGCATGTGGTAAATGCCAACCTCATTGTGTGCCTGTCAGTGGCAGTGTTTCTGTTTGCCTTCTGGGCATGACAGGCCTTAAGCTTTAATAAAGGCTAGGGACACTGGCAATCCTTGAAAGCATGgtcaacatttttttaagttatcAAGTAATGACTCACTTAAAAAATTTCAGCATTTTCAACTCAGTGGACATGGACAAGATCAGGATGTGTAGAAGATGGAGCAAAGGGTTATgcctattttatttatacagagtAACAAAACCTTTTTACAAGCCTCATACACTGAGATGCAGGCAATACTTTcctttattttagaatttattcTGTTCAGTAAGCTTTTTAAGGAAATACTTTTACTATTTACTTTCCAagaaatactttaaaataaactgaCACAGCTCAAAGA
>XM_034310196.1
GGTGGGTACGTCTCTATTTGCTAGTAACGTGGGCAGCGGTCACTTCATTGGTCTGGCTGGATCAGCAGCCGCCGCAGGCATCGCCCCCACTGCATATGAGTGGAATGGTATGCTGGTGGTTCTGCTCCTAGGCTGGTTCTTCCTCCCTATCTACATAGCTTCTGGGTGACAACTATGCCGGAATATCTTCAGAAGAGATTTGGAGGCAAAAGAATACAGATATTTATtgccattttgtcattatttatttacatcttCACAAAAATATCGGTGGATATGTATGCTGGAGCTGTGTTCATACAGCAGGCTCTGGGCTGGAATATTTATCTTGCTGTCATTCTTCTCCTCATCATTACTGCTCTCTATACTGTAGCAGGTGGTCTTGCAGCCGTCATCTACACAGATGCAGCTCAGACTCTCATCATGCTGATTGGGGCCCTGACACTTATGGGCTACAGTTTTGTGGAGGTCGGGGGCTTTCAGGCCATTTTTGATGGCTACAGCAATGCCATTCCCTCCATTAGAGTCCCAAACACCACCTGCGGGATCCCTCGCGAGGACGCCTTCCACATTTTCCGGGAtcctgtgacctctgaccttccCTGGCCAGGGGTGCTGCTGGGAATGACAGTCCCCTCCATATGGTACTGGTGTTCGGACCAGgttatAGTGCAGCGCTCACTGGCTGCTAAGAACCTGCTGCATGCTAAAGGAGGCTCTTTGCTGGCTTCCTACCTTAAGGTCCTGCCCTTCTTCATGATGGTGCTGCCAGGCATGATCAGCCGAATCCTCTATCCAGATGAGGTTGGCTGTGCAGACCCTGAAGTGTGTCAGAAGGTTTGTGGGAATTCTGTAGGCTGCTCTGACATCGCCTATGCCAAACTGGTCATGGAACTCCTTCCTTCAGGTCTGCGGGGTCTGATGATGGCCGTAATGCTAGCTGCTCTCATGTCTTCCCTGACCTCCATCTTTAACAGCTCCAGCACTCTGTTCACCATGGACTTATGGAGATATTTCCGCCGTACTGCCACAGAGTGGGAGCTCATGATCGTAGGCAGAGTGTTTGTCCTGGTCTTGGTGGTGGTGTCCGTGCTATGGATCCCCCTGGTTCAGGCCAGTCAAGGTGGCCAGCTCTTCATCTACATCCAGTCTATCAGCAGCTACATGCAGCCGCCTGTCTCTGTGGTGTTCATGGCAGGCTGCTTCTGGAGAAGGACAAGCGAGaagGGGGCATTCTGGGGTTTAGTGCTGGGGCTGCTGGTTGGCCTTGTGAGGATGATTCTGGATTTCATCTACCCTGTACCACAGTGCTACGAGACAGACACCAGGCCTGATATTATCAAATATGTGCACTATCTGTATTTCTCCATCATCCTCTCCCTGTTCACACTtgctgtggtggtgtgtgtcaGCTTGGCCACGGAGAAACCCACAGAAGAACAGGTAAGTCGGCTGACGTGGTTCACAAGGTTTGATCCTGTGAAGAGCAGTGAGGCCAGTAAAGAAGCTGGAACCCTTACTATCGATAACGGCTTACATCAGGAAAAGGAGAAGAGTCATGGAAATGTGACAGAGAACACAAATGGATCGAGTACACGCCATGCTGAGAAACCCTCTAAGCTGAAGTCCACTCTGCTCTGGCTGTGTGGGATGGAGCAGGATTCAGAAGGAGAGCGGCCCCCTCCATCACCGCCTGAGGCTGTCATGTGCTCCCTCGAGGAAGAGCCCTGTCTGAGGCATGTGGTAAATGCCAACCTCATTGTGTGCCTGTCAGTGGCAGTGTTTCTGTTTGCCTTCTGGGCATGACAGGCCTTAAGCTTTAATAAAGGCTAGGGACACTGGCAATCCTTGAAAGCATGgtcaacatttttttaagttatcAAGTAATGACTCACTTAAAAAATTTCAGCATTTTCAACTCAGTGGACATGGACAAGATCAGGATGTGTAGAAGATGGAGCAAAGGGTTATgcctattttatttatacagagtAACAAAACCTTTTTACAAGCCTCATACACTGAGATGCAGGCAATACTTTcctttattttagaatttattcTGTTCAGTAAGCTTTTTAAGGAAATACTTTTACTATTTACTTTCCAagaaatactttaaaataaactgaCACAGCTCAAAGA

Function

symbol description
slc5a11 Predicted to enable glucose:sodium symporter activity. Predicted to act upstream of or within transmembrane transport. Predicted to be located in membrane. Predicted to be active in plasma membrane. Predicted to be integral component of membrane. Orthologous to human SLC5A11 (solute carrier family 5 member 11).

NR:

description
PREDICTED: sodium/myo-inositol cotransporter 2

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005215 transporter activity molecular_function

KEGG:

id description
K14391 SLC5A11, SMIT2, SGLT6; solute carrier family 5 (sodium/myo-inositol cotransporter), member 11

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026916823.2 True 2538 mRNA 0.48 16 12190072 12200474
XM_034310196.1 False 2145 mRNA 0.49 13 12190072 12197857

Neighbor

gene id symbol gene type direction distance location
LOC113528185 LOC108275528,LOC103031371 coding downstream 36189 12147496 ~ 12153883 (-)
tnpo2 tnpo2,LOC108432206 coding downstream 157314 12015201 ~ 12032758 (-)
LOC113528656 NA coding downstream 164500 12025502 ~ 12025572 (-)
tmem104 tmem104,LOC107568246 coding downstream 177096 11963695 ~ 12012976 (-)
rln3a LOC108258150 coding downstream 361965 11826285 ~ 11828107 (-)
grid2ipa grid2ipa,LOC108432200,LOC107583579,LOC107758114,LOC107670677,LOC107728614,LOC107689997,LOC107559228 coding upstream 1494 12201968 ~ 12236027 (-)
e4f1 e4f1 coding upstream 38662 12239136 ~ 12248090 (-)
zgc:113333 NA coding upstream 50210 12250684 ~ 12261251 (-)
hagh haghl,LOC108432196,LOC104918824,LOC103393077,LOC101076411 coding upstream 71696 12272170 ~ 12278591 (-)
LOC113528334 hagh,LOC105892024,LOC106606699 coding upstream 79559 12280033 ~ 12287138 (-)
G209951 NA non-coding downstream 15665 12173454 ~ 12174407 (-)
G209946 NA non-coding downstream 30960 12158070 ~ 12159112 (-)
G209868 NA non-coding downstream 54153 12135508 ~ 12135919 (-)
G209835 NA non-coding downstream 105370 12083736 ~ 12084702 (-)
G209839 NA non-coding downstream 112999 12076672 ~ 12077073 (-)
G209961 NA non-coding upstream 36500 12236974 ~ 12237192 (-)
G209984 NA non-coding upstream 132980 12333454 ~ 12333662 (-)
LOC117598772 NA non-coding upstream 245987 12446461 ~ 12463878 (-)
G210123 NA non-coding upstream 385957 12586431 ~ 12587089 (-)
G210351 kpna2,LOC108261381,LOC100304957,LOC108432045 non-coding upstream 667116 12867590 ~ 12868480 (-)
zgc:162612 foxd1,LOC108278341,LOC107757501 other downstream 488900 11699849 ~ 11701172 (-)
hmox1a hmox1,LOC108432221 other downstream 542075 11642157 ~ 11647997 (-)
tecpr1b LOC108276900 other downstream 1719554 10450724 ~ 10470518 (-)
hoxb8a hoxb8a,LOC108278530,LOC108413053,LOC103044850,LOC107582957,LOC107662386,LOC107585089 other downstream 2457506 9729851 ~ 9732566 (-)
copz2 copz2,LOC108260256,LOC108413159,LOC107740614,LOC107662379,LOC107710054,LOC107585036,LOC107687783,LOC105013247,LOC108246742,LOC106527321,LOC106912034 other downstream 2715594 9464331 ~ 9474478 (-)
LOC113528332 hs3st6,LOC102795972 other upstream 97302 12297776 ~ 12315498 (-)
msrb1a msrb1 other upstream 133380 12333854 ~ 12339269 (-)
tom1 LOC108260160 other upstream 345859 12546333 ~ 12559213 (-)
elof1 elof1,LOC103393660,LOC100703874,LOC106589640,LOC103384163 other upstream 1190142 13390616 ~ 13395457 (-)
LOC117598755 NA other upstream 1194992 13395466 ~ 13399225 (-)

Expression


Co-expression Network