zgc:113333


Basic Information

Item Value
gene id zgc:113333
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 12250684 ~ 12261251 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026916824.2
ACAGCGACAACAGCAgacaatgcttttatttaaaagaactgGTAatagcaaacaaatccaaaccaTGAGGCACAGATCAAAAATACAAACCAGGCAATGAGTCAGACAATGAGCAAACAGAGCATCCAAGAGCAAGGCATGAATCAAAAACCTATGAAGCAAGCAAGGGTCAAAAGCAGTAATGACAAACATGAACTAAAGGCTTGGTACATCAGGGGAAAACTCAGAACCGAACGAATAGTGAGGGTGCATATATTGCatgtgtgcaatcagtaatcgGGTCTCTGTGAACATGACATTGAAGGTGGTGTGTGGGTGCTGTAGTCCAGAGTGTCCGTATTTGTATGCggaggtgcattgtgggaaatggagttcaGTTACAACAGTCCATTAAAAAGTTATTAGCACCAAAAAGacaaatgttagacatgtttAGAAGTAAGCTTATATAACTTATGCAGAAATTTGGGTGAGCCGTACCTTCTGATATATTTATAACCACAAAGATTCAACTGTAGccaaacatttaataacatatttgtaaaaatgtgaTGCATCAATTAATGGATGGAATGGTGAGAGGTTTGGCTGCATAATGACAGACTGGCATTCAGACAtgcaaaggtgtgtgtgtgtgtgtgtgtgtgaggccaaACAGGTTCATAATTTGACCTTGTTAGGGTTGCCTTGTTTGGTTTCTAGGTTAGGCAAACACTCATTGTGATATTTTTCAAGCCTTCTCTAACATTTCACATTTGTTCATGGAGGAATAATGGACTTGTAGTTTCTCAGATTATTGTTTCTCAGACCTGTCGCAGTGCTTTGATACTTTTTAAACCTTAATGAcacctgccttttttttttaatttagtagcAGTTTAgcttcataatttttttttggtattcaATTTGTATTTCCCGTAtgcaataattttttaattatgatgTGTAGTAGTTGTAAATTGTACATAATGTCTTAATAATCTACCAGTTATGTATAAAACAAAGTGCTACTGTTCTACAGTCATTGTATGTTGAGTGGAGGGGGCAGTTTGACTCACTCCTGCCAGTGTGGGATTATCTTTGCATGTGTTCGGGGTAGGTTTTATTTCTGCAGTAGCAACGCTATGGACTGCAAGAGGATCTTAAGGCTGCTGGTTGCCTTCCTGGTTGTGCTCGCTGGAGCAAAGCTGTTTTTCCACAGTCGAAGAACAGAAATTGGAGAATACACAAACATCAAGAAGTATGTCACAATGCCAGGTCACTTCTGGCTGCCAGAGCGTACAGCTGGACGCAGCAACTTGCTTGTGCCACCAACCCGTAAAAAGAATAAGGAGAAGTCAGGGGACCAGAAGACTGCCATTCATCCAAAGCTGGAAGTAAAAAGCTCAGTAAAATTCCCAGTGAAAATGTACACAGGCCCTCTCCGTGTAGTACACTTAGATCTTAAGGGTGCTGCACCCAAAGTCAGTTATTTTCAGCAGATCTTTCCACTAATCTCCAGTCTTGGTGCTGATGGGATTTTGGTGGAGTATGAGGATATGTTTCCCTATGAAGGGGACCTTGAAGTTCTCAGGTCACCTTTTGCATACAGCGTGGATGAAATAGAAGAAATTAAGAACCTGGCCAGCCTCTACAATCTTGAGCTGATACCCCTAGTGCAGGTGTTTGGACATCTAGAGTTTGTGCTAAAACATGGACAATTTTTTAACTTGAGAGAAGTGGCCGACTTTCCAAACAGCCTGAACCCTCTGGTTCCTGGTAGCTTAAAACTGGTTAAAGAAATGCTAACTCAGGTCCTGAAGAAGCACCCGCAGGCACGATGGTTTCATATTGGAGCTGATGAGGTTTATGGACTTGGTGAGAGTGCGGACTCGAAAAAGTGGATGAAGCAAAATAATGGAAGCATAGCAGCACTCTTCCTCAGCCATGTGACAAAGGTCTGCCACATCCTGGCTGAACTGAAGCCTGGAATAAAGCCTATATTTTGGGAAGACATGCTCAGGAAGATCAGTGCCACCTTACTCAAAGAATCCGGCTTGTCAAGTCTCGCATCCCCTATGATATGGAAATATAATGCAAACATGAATTTGGTCCAGATAGgAGAACTGCTATCTAACTACCAACAGGCCGGATTTCAGAATGTGTGGTTTGCAAGTGCATTTAAAGGAGCTTCAGGCATTGACCAGAGATGGACACCACTCAATCACCACTTAGAGAATCACCTAGCCTGGCTTAAAGTCATGGCCTCCATGTCTAAATACCCCTCTATAAAATTAGATGGCATAGTTTTAACAGGCTGGCAAAGATATGAGCATCACACAGTGCTATGTGAACTGCTTCCTGTGGCCATCCCATCTCTGGCCATTTGTCTAGAGACTCTAAAATATGGTTCATTTAATCGTACAGCTGAAACTGAGGTACAAAGACATTTGGGCTGTAAAGTTGACCTAAAAGCTAATAGCTgTCAAGGTAATGGGTCATTTGCAGGCTCTCAAGTTTATTACATGGTTCAAAAAATCCACAATGAACTTCGGAAATCCACTGAAGAAATGACTCAAAACTATCACCTGAGAGGATCATTTGGTCCTTACCAGAGAAAATACAACTTTGCCAATCCGCGGAATATTGGATATTTTAAGGGTGTACTAATCAAGTTGATGAATGAGTGGGATCACTTTATGGAGATGTTCAGGATGGAGATGCTGGTCGTCTACTTCCCAGACACTGTGGAGGAGTGGATGGAGGAGAACGTTAACCAATACATGGATAAACTCCATAGTCTGGCCAAAGACGTAGAACACATTGTTAAACTTAAAGGACAACCAAAGAGCCTTAAAACTGTATGATattatgatgatatatgatgGATGTTAAAAATATCTGACCCCCTTAGGAGGCTGAAAAAAATAAGGGTATTTTCTCCATGTTGCTAAACTCCATGTTGCTGTTACCAGGAAAATGATATGGGATTTAtattgatatgatatgatatgatatgatatatgatatgatatgggTGAATATTTGGTTGTGTGTAATTGAGAGACATATGTGAGGACctttttttcattatgtttcatgtttcattgaTGTATTGCACTTAACATTGCACTTTCTGTTTTGCATTGTCTCTTTAAAAAAACTGGAAGAGAGTTTTAAAAGTATAATGGGGTTTCTATGTTTTCACTGACTTTGTACAATAAATATGATAGGGGCTCA
>XM_026916825.2
ACTTTCCTACATAATCACTCATGATGCAATTGCCACTTGAGTGTGAGGCTGCTCATAAAAAGCCGTAgacatttgccttttttttttttgtttacattgctACACATGGAGCAGAAAGGAACAATCCATGTAAAATTTTCATCATTTGTCATCTGAGTTGCTGGAAACCGCTTTCAATGGCATTAAGAAGGTTTTATTTCTGCAGTAGCAACGCTATGGACTGCAAGAGGATCTTAAGGCTGCTGGTTGCCTTCCTGGTTGTGCTCGCTGGAGCAAAGCTGTTTTTCCACAGTCGAAGAACAGAAATTGGAGAATACACAAACATCAAGAAGTATGTCACAATGCCAGGTCACTTCTGGCTGCCAGAGCGTACAGCTGGACGCAGCAACTTGCTTGTGCCACCAACCCGTAAAAAGAATAAGGAGAAGTCAGGGGACCAGAAGACTGCCATTCATCCAAAGCTGGAAGTAAAAAGCTCAGTAAAATTCCCAGTGAAAATGTACACAGGCCCTCTCCGTGTAGTACACTTAGATCTTAAGGGTGCTGCACCCAAAGTCAGTTATTTTCAGCAGATCTTTCCACTAATCTCCAGTCTTGGTGCTGATGGGATTTTGGTGGAGTATGAGGATATGTTTCCCTATGAAGGGGACCTTGAAGTTCTCAGGTCACCTTTTGCATACAGCGTGGATGAAATAGAAGAAATTAAGAACCTGGCCAGCCTCTACAATCTTGAGCTGATACCCCTAGTGCAGGTGTTTGGACATCTAGAGTTTGTGCTAAAACATGGACAATTTTTTAACTTGAGAGAAGTGGCCGACTTTCCAAACAGCCTGAACCCTCTGGTTCCTGGTAGCTTAAAACTGGTTAAAGAAATGCTAACTCAGGTCCTGAAGAAGCACCCGCAGGCACGATGGTTTCATATTGGAGCTGATGAGGTTTATGGACTTGGTGAGAGTGCGGACTCGAAAAAGTGGATGAAGCAAAATAATGGAAGCATAGCAGCACTCTTCCTCAGCCATGTGACAAAGGTCTGCCACATCCTGGCTGAACTGAAGCCTGGAATAAAGCCTATATTTTGGGAAGACATGCTCAGGAAGATCAGTGCCACCTTACTCAAAGAATCCGGCTTGTCAAGTCTCGCATCCCCTATGATATGGAAATATAATGCAAACATGAATTTGGTCCAGATAGgAGAACTGCTATCTAACTACCAACAGGCCGGATTTCAGAATGTGTGGTTTGCAAGTGCATTTAAAGGAGCTTCAGGCATTGACCAGAGATGGACACCACTCAATCACCACTTAGAGAATCACCTAGCCTGGCTTAAAGTCATGGCCTCCATGTCTAAATACCCCTCTATAAAATTAGATGGCATAGTTTTAACAGGCTGGCAAAGATATGAGCATCACACAGTGCTATGTGAACTGCTTCCTGTGGCCATCCCATCTCTGGCCATTTGTCTAGAGACTCTAAAATATGGTTCATTTAATCGTACAGCTGAAACTGAGGTACAAAGACATTTGGGCTGTAAAGTTGACCTAAAAGCTAATAGCTgTCAAGGTAATGGGTCATTTGCAGGCTCTCAAGTTTATTACATGGTTCAAAAAATCCACAATGAACTTCGGAAATCCACTGAAGAAATGACTCAAAACTATCACCTGAGAGGATCATTTGGTCCTTACCAGAGAAAATACAACTTTGCCAATCCGCGGAATATTGGATATTTTAAGGGTGTACTAATCAAGTTGATGAATGAGTGGGATCACTTTATGGAGATGTTCAGGATGGAGATGCTGGTCGTCTACTTCCCAGACACTGTGGAGGAGTGGATGGAGGAGAACGTTAACCAATACATGGATAAACTCCATAGTCTGGCCAAAGACGTAGAACACATTGTTAAACTTAAAGGACAACCAAAGAGCCTTAAAACTGTATGATattatgatgatatatgatgGATGTTAAAAATATCTGACCCCCTTAGGAGGCTGAAAAAAATAAGGGTATTTTCTCCATGTTGCTAAACTCCATGTTGCTGTTACCAGGAAAATGATATGGGATTTAtattgatatgatatgatatgatatgatatatgatatgatatgggTGAATATTTGGTTGTGTGTAATTGAGAGACATATGTGAGGACctttttttcattatgtttcatgtttcattgaTGTATTGCACTTAACATTGCACTTTCTGTTTTGCATTGTCTCTTTAAAAAAACTGGAAGAGAGTTTTAAAAGTATAATGGGGTTTCTATGTTTTCACTGACTTTGTACAATAAATATGATAGGGGCTCA

Function

NR:

description
PREDICTED: hexosaminidase D-like isoform X1

GO: NA

KEGG:

id description
K14459 HEX; hexosaminidase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026916824.2 True 3222 mRNA 0.40 13 12250684 12259495
XM_026916825.2 False 2310 mRNA 0.41 14 12250684 12261251

Neighbor

gene id symbol gene type direction distance location
e4f1 e4f1 coding downstream 2594 12239136 ~ 12248090 (-)
grid2ipa grid2ipa,LOC108432200,LOC107583579,LOC107758114,LOC107670677,LOC107728614,LOC107689997,LOC107559228 coding downstream 14657 12201968 ~ 12236027 (-)
slc5a11 slc5a11,LOC107670676 coding downstream 50210 12190072 ~ 12200474 (-)
LOC113528185 LOC108275528,LOC103031371 coding downstream 96801 12147496 ~ 12153883 (-)
tnpo2 tnpo2,LOC108432206 coding downstream 217926 12015201 ~ 12032758 (-)
hagh haghl,LOC108432196,LOC104918824,LOC103393077,LOC101076411 coding upstream 10919 12272170 ~ 12278591 (-)
LOC113528334 hagh,LOC105892024,LOC106606699 coding upstream 18782 12280033 ~ 12287138 (-)
LOC113528330 rpl3l coding upstream 95373 12356624 ~ 12363766 (-)
rps2 rps2,LOC107690003,LOC107758112 coding upstream 110282 12371533 ~ 12374265 (-)
si:ch211-139g16.8 NA coding upstream 114642 12375893 ~ 12381034 (-)
G209961 NA non-coding downstream 13492 12236974 ~ 12237192 (-)
G209951 NA non-coding downstream 76277 12173454 ~ 12174407 (-)
G209946 NA non-coding downstream 91572 12158070 ~ 12159112 (-)
G209868 NA non-coding downstream 114765 12135508 ~ 12135919 (-)
G209835 NA non-coding downstream 165982 12083736 ~ 12084702 (-)
G209984 NA non-coding upstream 72203 12333454 ~ 12333662 (-)
LOC117598772 NA non-coding upstream 185210 12446461 ~ 12463878 (-)
G210123 NA non-coding upstream 325180 12586431 ~ 12587089 (-)
G210351 kpna2,LOC108261381,LOC100304957,LOC108432045 non-coding upstream 606339 12867590 ~ 12868480 (-)
G210349 kpna2,LOC108261381,LOC108432045,LOC106607066 non-coding upstream 608001 12869252 ~ 12870186 (-)
zgc:162612 foxd1,LOC108278341,LOC107757501 other downstream 549512 11699849 ~ 11701172 (-)
hmox1a hmox1,LOC108432221 other downstream 602687 11642157 ~ 11647997 (-)
tecpr1b LOC108276900 other downstream 1780166 10450724 ~ 10470518 (-)
hoxb8a hoxb8a,LOC108278530,LOC108413053,LOC103044850,LOC107582957,LOC107662386,LOC107585089 other downstream 2518118 9729851 ~ 9732566 (-)
copz2 copz2,LOC108260256,LOC108413159,LOC107740614,LOC107662379,LOC107710054,LOC107585036,LOC107687783,LOC105013247,LOC108246742,LOC106527321,LOC106912034 other downstream 2776206 9464331 ~ 9474478 (-)
LOC113528332 hs3st6,LOC102795972 other upstream 36525 12297776 ~ 12315498 (-)
msrb1a msrb1 other upstream 72603 12333854 ~ 12339269 (-)
tom1 LOC108260160 other upstream 285082 12546333 ~ 12559213 (-)
elof1 elof1,LOC103393660,LOC100703874,LOC106589640,LOC103384163 other upstream 1129365 13390616 ~ 13395457 (-)
LOC117598755 NA other upstream 1134215 13395466 ~ 13399225 (-)

Expression


Co-expression Network