narfl (narfl,LOC106606697)


Basic Information

Item Value
gene id narfl
gene name narfl,LOC106606697
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 12264705 ~ 12272091 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026916826.2
GAGGAGCTTCCAGAGCTGCCAGGTAGCTAATGTCGCGTTTGGTCGCAGTGTATTATTGTATGGAGGTCATTCAATATGGCGTCTCACTTTAGCGGAGTTTTACAACTGACTGATTTGGATGATTTTATCACACCGTCACAGGAATGTGTGAAGCCAGTGAAAGTGGACAAGAAGCAGGGGCGATCTGTGGCCAAAATCCAGATTGAAGATGATGGCTCTTACTTTCAGGTTAATGAGGATGGCCGAATGCAGAAGCTGGAGAAAGCCAAGATCACTCTGAATGACTGTTTGGCCTGTAGTGGCTGCATCACGTCAGCCGAGAGCATCTTAATCACCCAGCAGAGTCATGAGGAACTATACCGAGTGCTCCGCCTCAATAAGCAGAGTAGCAGCAGTGAGCAGAAGCTGGTTGTAGTGTCAGTGTCACCACAGTCTCGGGCTTCCCTAGCCACACGCTACTCTCTCAGCAGCAGCGAGGTGGCCAGGAGGCTTACAACCTTCTTCAAAAATCTGGGTGTTCATTATGTATTTGACACTGGATTCAGTCGCACCTTCAGCCTGCTGGAGAGTCAGAGAGAGTTCCTCAAGAGGTTTGCTCGGAAAGGGGAGGACAAGAAAGCCTTGCCCATGCTGGCATCTGCCTGCCCAGGTTGGATCTGCTATGCTGAGAAGACCCATGGTGACTTCATCCTGCCTTACATCAGTACAACCCGTTCTCCTCAACAGATGATGGGCTCACTGGTCAAGAGATTCTTCGCTAGTCAGCAGGGTGTTGAACCGCAAAAGATTTACCATGTGACCGTGATGCCTTGCTATGACAAGAAACTGGAAGCTTCCAGACCTGATTTCTACCTTAGCGAGGCAGAGACCAGAGAAGTGGACTGTGTCATTACATCAGGAGAAGTTCTCAagatgttggaagaggaaggcgTGTCTCTGTGTGATATAGAGCCAGCACCTTTAGATACTATGTTCAGTAATGTGTGTGGTGAGGAGCTGCTGTGTCATGCTGGGAGTGGTTCAGGAGGATATCTTCATCACGTCTACACTCGCGCTGCCAAACAACTCTTTGGAGTTGAAGTGGAGGAACTCACATACAAGACTCTCAAAAACAAGGACTTCCAGGAAGTCATTctagagaaagatggagaagtTCTTCTGCGCTTTGCTGCCACCTACGGCTTCAGGAATATTCAGAACCTCGTGCAGAAGTTGAAGAGAGGAAAGTCACCGTACCATTTTGTAGAAGTCATGGCATGTCCATCAGGGTGCCTGAATGGCGGAGGTCAGCTGAAGCCTGTAGCAGATCAGTCCAACAAGGAGCTGCTGCAGCAGGTGGAGGTGGCATACAGAGCGGAGCAGCCGTCTGCACCCGAGGAGGATCAGCGTGTTGCTGAGCTTTACCACACATGGCTAAAGAGTATGGGAGAGGAGAAAGCACGAGAGCTACTTCACACGCAGTATCACGCAGTGGAGAAAAGCACCAATGGACTCACCATCAAGTGGTGAAAATCTGAAAGCCTGGTGTGTGAATCGTCTGAAATCTATAAAGCAGCAAAGTGATGCATGGAATATGATCTCCAGCACGGCAATTCAGGACAAGTGTTAGAGTAATGAGCTCATGATCACAATCTTGAGAAAATTCTTGTATAATAAAGTACAATCAGCGTTCATGTGTAGTTGTTTCAGCACATGATTATATGCATAAAGGCATAACCACTTTTCCCAAGCTTACcagctgatttattttctgCGGCTTTGTACTGGGCATCACGTACGAGTGCTCCAGTATTTCATGACAACTTTCATGACAATTCCATAAGTACAGAAGCAAGACTGATGCTCCTCAAAGTCATCTGTTTTGAAATGAGTAAGTTCACAGACTCAGTTGTGTAGCGTTTGTCTGTGAAGCCTCCACATACTGTTTTTTTGCTCTGTAGTTGCATCATGTTGTGTGTGGGAGCAAGCCGAACATCATCTCCCCATGAAGTATGCTGAGTCCTTAGTTTgtctaaacac
>XM_026916827.2
GAGGAGCTTCCAGAGCTGCCAGGTAGCTAATGTCGCGTTTGGTCGCAGTGTATTATTGTATGGAGGTCATTCAATATGGCGTCTCACTTTAGCGGAGTTTTACAACTGACTGATTTGGATGATTTTATCACACCGTCACAGGAATGTGTGAAGCCAGTGAAAGTGGACAAGAAGCAGGGGCGATCTGTGGCCAAAATCCAGATTGAAGATGATGGCTCTTACTTTCAGGTTAATGAGGATGGCCGAATGCAGAAGCTGGAGAAAGCCAAGATCACTCTGAATGACTGTTTGGCCTGTAGTGGCTGCATCACGTCAGCCGAGAGCATCTTAATCACCCAGCAGAGTCATGAGGAACTATACCGAGTGCTCCGCCTCAATAAGAGTAGCAGCAGTGAGCAGAAGCTGGTTGTAGTGTCAGTGTCACCACAGTCTCGGGCTTCCCTAGCCACACGCTACTCTCTCAGCAGCAGCGAGGTGGCCAGGAGGCTTACAACCTTCTTCAAAAATCTGGGTGTTCATTATGTATTTGACACTGGATTCAGTCGCACCTTCAGCCTGCTGGAGAGTCAGAGAGAGTTCCTCAAGAGGTTTGCTCGGAAAGGGGAGGACAAGAAAGCCTTGCCCATGCTGGCATCTGCCTGCCCAGGTTGGATCTGCTATGCTGAGAAGACCCATGGTGACTTCATCCTGCCTTACATCAGTACAACCCGTTCTCCTCAACAGATGATGGGCTCACTGGTCAAGAGATTCTTCGCTAGTCAGCAGGGTGTTGAACCGCAAAAGATTTACCATGTGACCGTGATGCCTTGCTATGACAAGAAACTGGAAGCTTCCAGACCTGATTTCTACCTTAGCGAGGCAGAGACCAGAGAAGTGGACTGTGTCATTACATCAGGAGAAGTTCTCAagatgttggaagaggaaggcgTGTCTCTGTGTGATATAGAGCCAGCACCTTTAGATACTATGTTCAGTAATGTGTGTGGTGAGGAGCTGCTGTGTCATGCTGGGAGTGGTTCAGGAGGATATCTTCATCACGTCTACACTCGCGCTGCCAAACAACTCTTTGGAGTTGAAGTGGAGGAACTCACATACAAGACTCTCAAAAACAAGGACTTCCAGGAAGTCATTctagagaaagatggagaagtTCTTCTGCGCTTTGCTGCCACCTACGGCTTCAGGAATATTCAGAACCTCGTGCAGAAGTTGAAGAGAGGAAAGTCACCGTACCATTTTGTAGAAGTCATGGCATGTCCATCAGGGTGCCTGAATGGCGGAGGTCAGCTGAAGCCTGTAGCAGATCAGTCCAACAAGGAGCTGCTGCAGCAGGTGGAGGTGGCATACAGAGCGGAGCAGCCGTCTGCACCCGAGGAGGATCAGCGTGTTGCTGAGCTTTACCACACATGGCTAAAGAGTATGGGAGAGGAGAAAGCACGAGAGCTACTTCACACGCAGTATCACGCAGTGGAGAAAAGCACCAATGGACTCACCATCAAGTGGTGAAAATCTGAAAGCCTGGTGTGTGAATCGTCTGAAATCTATAAAGCAGCAAAGTGATGCATGGAATATGATCTCCAGCACGGCAATTCAGGACAAGTGTTAGAGTAATGAGCTCATGATCACAATCTTGAGAAAATTCTTGTATAATAAAGTACAATCAGCGTTCATGTGTAGTTGTTTCAGCACATGATTATATGCATAAAGGCATAACCACTTTTCCCAAGCTTACcagctgatttattttctgCGGCTTTGTACTGGGCATCACGTACGAGTGCTCCAGTATTTCATGACAACTTTCATGACAATTCCATAAGTACAGAAGCAAGACTGATGCTCCTCAAAGTCATCTGTTTTGAAATGAGTAAGTTCACAGACTCAGTTGTGTAGCGTTTGTCTGTGAAGCCTCCACATACTGTTTTTTTGCTCTGTAGTTGCATCATGTTGTGTGTGGGAGCAAGCCGAACATCATCTCCCCATGAAGTATGCTGAGTCCTTAGTTTgtctaaacac

Function

symbol description
narfl Predicted to enable 4 iron, 4 sulfur cluster binding activity. Acts upstream of or within sprouting angiogenesis. Predicted to be part of CIA complex. Is expressed in several structures, including eye; gill; heart; liver; and pleuroperitoneal region. Orthologous to human CIAO3 (cytosolic iron-sulfur assembly component 3).

NR:

description
cytosolic Fe-S cluster assembly factor NARFL isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026916826.2 True 2019 mRNA 0.47 11 12264705 12272091
XM_026916827.2 False 2016 mRNA 0.47 11 12264705 12272091

Neighbor

gene id symbol gene type direction distance location
cbx8a cbx8,LOC108261002,LOC107085518 coding upstream 132408 12129591 ~ 12132297 (+)
cbx4 cbx4,LOC108260285 coding upstream 142569 12116439 ~ 12122136 (+)
gaa gaa,LOC106601771 coding upstream 219201 12033886 ~ 12045504 (+)
grin2ca grin2c,LOC100329743,LOC107658706,LOC107758122,LOC107559244 coding upstream 345042 11861586 ~ 11919663 (+)
rfx1a LOC108260824,LOC108432209 coding upstream 414369 11830043 ~ 11850336 (+)
fahd1 fahd1 coding downstream 15129 12287220 ~ 12288452 (+)
LOC113528323 LOC108258986 coding downstream 68859 12340950 ~ 12356527 (+)
kdelr2a erd22,kdelr2a,LOC108432184,LOC107670681,LOC107555655,LOC107728665 coding downstream 113884 12385975 ~ 12389435 (+)
spag9a LOC108257234,LOC108432181 coding downstream 124413 12396504 ~ 12435649 (+)
tob1a tob1,LOC108432179,LOC107690006,LOC107555665,LOC104949960,LOC107758110 coding downstream 215186 12487277 ~ 12490947 (+)
G209897 grid2ipa,LOC107758114,LOC107583579,LOC107559228,LOC107689997,LOC107728614,LOC107670677 non-coding upstream 32054 12232321 ~ 12232651 (+)
G209894 NA non-coding upstream 45152 12219301 ~ 12219553 (+)
G209887 NA non-coding upstream 55581 12208886 ~ 12209124 (+)
G209886 NA non-coding upstream 56219 12208236 ~ 12208486 (+)
G209884 NA non-coding upstream 62428 12201238 ~ 12202277 (+)
G209943 NA non-coding downstream 103816 12375907 ~ 12378084 (+)
G209944 NA non-coding downstream 106068 12378159 ~ 12378413 (+)
G209945 NA non-coding downstream 106855 12378946 ~ 12380986 (+)
G210086 NA non-coding downstream 274342 12546433 ~ 12548503 (+)
G210160 NA non-coding downstream 507158 12779249 ~ 12780136 (+)
arhgap17b LOC108279379,LOC108432202 other upstream 74635 12158703 ~ 12190070 (+)
LOC113528416 LOC108275780 other upstream 124334 12135269 ~ 12140371 (+)
tbc1d16 tbc1d16,LOC107559246,LOC107689993,LOC107670685,LOC107562324 other upstream 178647 12049407 ~ 12086058 (+)
luc7l3 luc7l3,LOC107674472,LOC107726809,LOC107654661 other upstream 686882 11567119 ~ 11577823 (+)
cdc42ep4a LOC108256079,LOC108432235,LOC103033379 other upstream 876685 11280080 ~ 11388020 (+)
ndufb10 ndufb10 other downstream 95475 12367566 ~ 12374372 (+)
znf653 znf653,LOC104961106,LOC107553636,LOC103393609 other downstream 1163290 13435381 ~ 13445686 (+)
zgc:158403 zgc:158403,LOC108258290,LOC108441004,LOC107718630,LOC107553678,LOC107661656,LOC107695678 other downstream 1191994 13464085 ~ 13493942 (+)
socs3a socs3 other downstream 2347113 14619204 ~ 14621788 (+)
LOC117598752 NA other downstream 2715995 14988086 ~ 14991450 (+)

Expression


Co-expression Network