LOC113528334 (hagh,LOC105892024,LOC106606699)


Basic Information

Item Value
gene id LOC113528334
gene name hagh,LOC105892024,LOC106606699
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 12280033 ~ 12287138 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026916833.2
AGAGTGGGCGGGATTGTACTTCAAATCCAACTTTCTACTTCTTCCGTGTGGTGTCGTAATCGCGATATTACCATGTTATTTAAGTCTCTGCTCTTCGGGGCTTGCGGTCTTGGCGCACTTGGAGCTGCAGCGTATAAATTTGccCCTACTCAGATCCCGGCAGCATTTTTTCATTCCGTGGTTAGGAAATCAGCTCTCGTGGAGCAGTCCAACATGAAGATAGAGCTGTTGCCTGCACTCACTGATAACTACATGTACCTCCTCATTGACGAGGACACAAAAGAGGCAGCCATTGTGGACCCAGTAGAACCTGTGAAGGTTGTTGAAGCTGTTAAGAAGCACGGCGTGAGGCTCAAAACCGTTCTAACCACACATCATCACTGGGACCATGCTGGTGGAAATGAGAAGATGGTGAAATTGGTCCCTGGGCTGACTGTGTATGGAGGTGATGACAGAATAGGAGCCTTGACCAAAAAAGTAACACATTACAACACTTTCAAGGTGGGCTCGCTCAATGTAAAGTGTTTGTTTACACCGTGCCATACGAGTGGACACATCTGCTATTTTGTGACATCAGAAAATAGTTCTGAACCCCCGGCGGTGTTTACAGGGGACACCCTGTTTGTGGCAGGCTGTGGAAAATTCTTTGAGGGTACAGCTGAGGAAATGTACAAAGCTCTGGTAGACATTCTGGGACGACTTCCTCCTGAGACGCGTGTGTACTGTGGTCATGAGTACACGATCAACAATTTAAAATTTGCACGCCATGTTGAACCAAATAACGAGGCCATCAGGAGAAAACTGGCATGGGCTAAGGAGAAATACGATAACGGAGAGCCAACCATTCCTTCCACGATGGCGGACGAGTTCACGTTCAACCCTTTCATGAGAGTcagGGAGAAGTCAGTACAGATGCATGCCGGGACAAGTGACCCCATAGACACGATGAGGAGCATCCGTAAAGAGAAGGACGGCTTCAAAGTGCCCAAGGACTGAGCTTGTGTGCAGCTTTCAATGCATTGAGGAAATTCTCCATCACAATGCGTCTTCATTGCACTTCATACTCTTACTAACATAAACTGGGCTATACACAGGAAGGAGAACATTCATGTTAATCCAACATTTATAAGCTCCTTTAGGGGTAGGGattgatttaaatgttttgtgtttctctggTCAGCTTGTTGTTCAAAATGACCATCACATGCCAGCCATGGCCTCAGAGCTGCACTGAAGTATTTAGCTGACTTAGCTCATCTGCTGCttatcatatataatataacttaTAAGAGTCttttatgatttaattaattgtgTTAGAGCTGGGAAAACATGAAGCTTCACAGTGCTGTGGCACCTTAAGAGTTTGATTTGGATTAATGTTTATACAGTAGAAAGTGTGAAATCAAATCCAGCAAGCAGCATATCTAGTTTCTAAGTTAAAGGTACTCATTAGTGGCACCTATAGAATCTGCATAAGGAATACTAACAGCTTCTCAGAGTTACAAAAAAAGTTGTTTCAAACCTTTttctgtgatgtgtttagtttggtaaatgaaaaaaaaaagccagatgtttctgatttaaaaatatttacatatgttGTGATTTTGAAAGCAGGGGTTCTTAATTAGTAAACAGATGTCTTAATgtgcaatgttttatttttgttgactGAAGAAGACTATATTAAGATGGTAGGTGGTTATGATCTTTGTGTTACAAGAGAAAATGCATTTACAGGATTCCAGACAGTATGCATGGTCAGATATGAGACATTCATATCTTTAAAATTCTTTCATATAGAGGCAAAAGTTGCCATGCCCTGATTATTATTGTACCCTGCTGTGCACTTTCTGTTTTCAGAAGCgaaaaagcaaaaatgattatatatcaGTGTGATCAATAAAGTGCCTGGGAGAACCAA
>XM_026916834.2
AGAGTGGGCGGGATTGTACTTCAAATCCAACTTTCTACTTCTTCCGTGTGGTGTCGTAATCGCGATATTACCATGTTATTTAAGTCTCTGCTCTTCGGGGCTTGCGGTCTTGGCGCACTTGGAGCTGCAGCGTATAAATTTGccCCTACTCAGATCCCGGCAGCATTTTTTCATTCCGTGGTTAGGAAATCAGCTCTCGTGGAGCAGTCCAACATGAAGATAGAGCTGTTGCCTGCACTCACTGATAACTACATGTACCTCCTCATTGACGAGGACACAAAAGAGGCAGCCATTGTGGACCCAGTAGAACCTGTGAAGGTTGTTGAAGCTGTTAAGAAGCACGGCGTGAGGCTCAAAACCGTTCTAACCACACATCATCACTGGGACCATGCTGGTGGAAATGAGAAGATGGTGAAATTGGTCCCTGGGCTGACTGTGTATGGAGGTGATGACAGAATAGGAGCCTTGACCAAAAAAGTAACACATTACAACACTTTCAAGGTGGGCTCGCTCAATGTAAAGTGTTTGTTTACACCGTGCCATACGAGTGGACACATCTGCTATTTTGTGACATCAGAAAATAGTTCTGAACCCCCGGCGGTGTTTACAGGGGACACCCTGTTTGTGGCAGGCTGTGGAAAATTCTTTGAGGGTACAGCTGAGGAAATGTACAAAGCTCTGGTAGACATTCTGGGACGACTTCCTCCTGAGACGGAGAAATACGATAACGGAGAGCCAACCATTCCTTCCACGATGGCGGACGAGTTCACGTTCAACCCTTTCATGAGAGTcagGGAGAAGTCAGTACAGATGCATGCCGGGACAAGTGACCCCATAGACACGATGAGGAGCATCCGTAAAGAGAAGGACGGCTTCAAAGTGCCCAAGGACTGAGCTTGTGTGCAGCTTTCAATGCATTGAGGAAATTCTCCATCACAATGCGTCTTCATTGCACTTCATACTCTTACTAACATAAACTGGGCTATACACAGGAAGGAGAACATTCATGTTAATCCAACATTTATAAGCTCCTTTAGGGGTAGGGattgatttaaatgttttgtgtttctctggTCAGCTTGTTGTTCAAAATGACCATCACATGCCAGCCATGGCCTCAGAGCTGCACTGAAGTATTTAGCTGACTTAGCTCATCTGCTGCttatcatatataatataacttaTAAGAGTCttttatgatttaattaattgtgTTAGAGCTGGGAAAACATGAAGCTTCACAGTGCTGTGGCACCTTAAGAGTTTGATTTGGATTAATGTTTATACAGTAGAAAGTGTGAAATCAAATCCAGCAAGCAGCATATCTAGTTTCTAAGTTAAAGGTACTCATTAGTGGCACCTATAGAATCTGCATAAGGAATACTAACAGCTTCTCAGAGTTACAAAAAAAGTTGTTTCAAACCTTTttctgtgatgtgtttagtttggtaaatgaaaaaaaaaagccagatgtttctgatttaaaaatatttacatatgttGTGATTTTGAAAGCAGGGGTTCTTAATTAGTAAACAGATGTCTTAATgtgcaatgttttatttttgttgactGAAGAAGACTATATTAAGATGGTAGGTGGTTATGATCTTTGTGTTACAAGAGAAAATGCATTTACAGGATTCCAGACAGTATGCATGGTCAGATATGAGACATTCATATCTTTAAAATTCTTTCATATAGAGGCAAAAGTTGCCATGCCCTGATTATTATTGTACCCTGCTGTGCACTTTCTGTTTTCAGAAGCgaaaaagcaaaaatgattatatatcaGTGTGATCAATAAAGTGCCTGGGAGAACCAA

Function

symbol description
hagh Predicted to enable hydroxyacylglutathione hydrolase activity and metal ion binding activity. Predicted to act upstream of or within methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione. Predicted to be located in mitochondrial matrix. Is expressed in gut; intestinal bulb; and liver. Orthologous to human HAGH (hydroxyacylglutathione hydrolase).

GO:

id name namespace
GO:0006750 glutathione biosynthetic process biological_process
GO:0005759 mitochondrial matrix cellular_component
GO:0008270 zinc ion binding molecular_function
GO:0004416 hydroxyacylglutathione hydrolase activity molecular_function

KEGG:

id description
K01069 gloB, gloC, HAGH; hydroxyacylglutathione hydrolase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026916833.2 True 1927 mRNA 0.42 9 12280033 12287138
XM_026916834.2 False 1825 mRNA 0.42 8 12280033 12287138

Neighbor

gene id symbol gene type direction distance location
hagh haghl,LOC108432196,LOC104918824,LOC103393077,LOC101076411 coding downstream 1442 12272170 ~ 12278591 (-)
zgc:113333 NA coding downstream 18782 12250684 ~ 12261251 (-)
e4f1 e4f1 coding downstream 31943 12239136 ~ 12248090 (-)
grid2ipa grid2ipa,LOC108432200,LOC107583579,LOC107758114,LOC107670677,LOC107728614,LOC107689997,LOC107559228 coding downstream 44006 12201968 ~ 12236027 (-)
slc5a11 slc5a11,LOC107670676 coding downstream 79559 12190072 ~ 12200474 (-)
LOC113528330 rpl3l coding upstream 69486 12356624 ~ 12363766 (-)
rps2 rps2,LOC107690003,LOC107758112 coding upstream 84395 12371533 ~ 12374265 (-)
si:ch211-139g16.8 NA coding upstream 88755 12375893 ~ 12381034 (-)
LOC113528448 tmem159 coding upstream 102568 12389706 ~ 12394578 (-)
wfikkn2a wfikkn2,LOC103032076,LOC107690026,LOC107758109,LOC107555656,LOC107670669,LOC107583670 coding upstream 239202 12526340 ~ 12530301 (-)
G209961 NA non-coding downstream 42841 12236974 ~ 12237192 (-)
G209951 NA non-coding downstream 105626 12173454 ~ 12174407 (-)
G209946 NA non-coding downstream 120921 12158070 ~ 12159112 (-)
G209868 NA non-coding downstream 144114 12135508 ~ 12135919 (-)
G209835 NA non-coding downstream 195331 12083736 ~ 12084702 (-)
G209984 NA non-coding upstream 46316 12333454 ~ 12333662 (-)
LOC117598772 NA non-coding upstream 159323 12446461 ~ 12463878 (-)
G210123 NA non-coding upstream 299293 12586431 ~ 12587089 (-)
G210351 kpna2,LOC108261381,LOC100304957,LOC108432045 non-coding upstream 580452 12867590 ~ 12868480 (-)
G210349 kpna2,LOC108261381,LOC108432045,LOC106607066 non-coding upstream 582114 12869252 ~ 12870186 (-)
zgc:162612 foxd1,LOC108278341,LOC107757501 other downstream 578861 11699849 ~ 11701172 (-)
hmox1a hmox1,LOC108432221 other downstream 632036 11642157 ~ 11647997 (-)
tecpr1b LOC108276900 other downstream 1809515 10450724 ~ 10470518 (-)
hoxb8a hoxb8a,LOC108278530,LOC108413053,LOC103044850,LOC107582957,LOC107662386,LOC107585089 other downstream 2547467 9729851 ~ 9732566 (-)
copz2 copz2,LOC108260256,LOC108413159,LOC107740614,LOC107662379,LOC107710054,LOC107585036,LOC107687783,LOC105013247,LOC108246742,LOC106527321,LOC106912034 other downstream 2805555 9464331 ~ 9474478 (-)
LOC113528332 hs3st6,LOC102795972 other upstream 10638 12297776 ~ 12315498 (-)
msrb1a msrb1 other upstream 46716 12333854 ~ 12339269 (-)
tom1 LOC108260160 other upstream 259195 12546333 ~ 12559213 (-)
elof1 elof1,LOC103393660,LOC100703874,LOC106589640,LOC103384163 other upstream 1103478 13390616 ~ 13395457 (-)
LOC117598755 NA other upstream 1108328 13395466 ~ 13399225 (-)

Expression


Co-expression Network