fahd1 (fahd1)


Basic Information

Item Value
gene id fahd1
gene name fahd1
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 12287220 ~ 12288452 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026916836.2
TATGCTCAAAGACCTGTCTATTGGATATACAGTGCACTTGATTAGACGTAACTTCATAGTCTAAGTAGTGGACAAGTTTAGGGAGCATGTAGTAAGTTGAGATTCAGCCATAGACGGACGTTTTCAGGCTCAGAGGAGCTGAAATGAGCAGGGGAAATGTGGCTCGTTTCTGGGAGTGGGGACGAAAGATCATTTGCGTGGGGCGAAATTACGCAGAACACGCCAGAGAGCTGAGGAACGAGCTGCCCACGGAGCCCGTGCTGTTCCTGAAGCCGCCCACGGCGTACGTGAAGGAGGGCTCTCCGATCCTGGTGCCTCACTACTCCTCCACTCTGCACCATGAAGTGGAGCTCGGCGTGGTGGTGGGCAGAGCGGGCAGAGAGATCCCCCAGACCTCCGCCATGGAGCATGTAGCCGGATACGCGCTGTGCCTGGACATGACCGCGCGGGACGTTCAGGACCAGTGCAAAGCCAAAGGGCTGCCCTGGACTCTGGCCAAAGCCTTCGACACGTCCTGTCCCGTGAGCGACTTCATCCCCAAAGAGCGGATCCCGGATCCGGCAGGTGTGGAGCTGTGGCTCAGGGTGAACAGCGTCACTCGGCAGAGAGGCAGCACGGCGCACATGATCTTCTCAGTGCCCTACCTGATCAGCTACATCAGCAGGGTCATGGCGTTAGAGGAAGGAGATCTCATACTGACCGGGACGCCCAAAGGAGTCGGAGCCGTGCACGAGCACGACGAGCTTCAGGCTGGCATCGAGGGTGTCATCAGCGTGACGTTTCGAGTCAGCAGACAGGCTGCAATACACAACTGACAATACACGAGTTCAGGCTTTTCTCGCTGGCGGTTTATCTCACAACTCATGTTGTGCAAATTTAAGTAAACATACACTCAGTGGCCAAAAccttgtggacacctgaccatcacacctataggtctgccttcctcaaactgttgccacaaacctggaagcacacaactgtatagaaagtctttgtatgctgtagcattacaat

Function

symbol description
fahd1 Predicted to enable acetylpyruvate hydrolase activity. Predicted to be active in mitochondrion. Orthologous to human FAHD1 (fumarylacetoacetate hydrolase domain containing 1).

NR:

description
PREDICTED: acylpyruvase FAHD1, mitochondrial

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K01557 FAHD1; acylpyruvate hydrolase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026916836.2 True 1017 mRNA 0.55 2 12287220 12288452

Neighbor

gene id symbol gene type direction distance location
narfl narfl,LOC106606697 coding upstream 15129 12264705 ~ 12272091 (+)
cbx8a cbx8,LOC108261002,LOC107085518 coding upstream 154923 12129591 ~ 12132297 (+)
cbx4 cbx4,LOC108260285 coding upstream 165084 12116439 ~ 12122136 (+)
gaa gaa,LOC106601771 coding upstream 241716 12033886 ~ 12045504 (+)
grin2ca grin2c,LOC100329743,LOC107658706,LOC107758122,LOC107559244 coding upstream 367557 11861586 ~ 11919663 (+)
LOC113528323 LOC108258986 coding downstream 52498 12340950 ~ 12356527 (+)
kdelr2a erd22,kdelr2a,LOC108432184,LOC107670681,LOC107555655,LOC107728665 coding downstream 97523 12385975 ~ 12389435 (+)
spag9a LOC108257234,LOC108432181 coding downstream 108052 12396504 ~ 12435649 (+)
tob1a tob1,LOC108432179,LOC107690006,LOC107555665,LOC104949960,LOC107758110 coding downstream 198825 12487277 ~ 12490947 (+)
ntn1b ntn1,LOC107728387,LOC107583316,LOC107672692,LOC107719327 coding downstream 327832 12616284 ~ 12661616 (+)
G209897 grid2ipa,LOC107758114,LOC107583579,LOC107559228,LOC107689997,LOC107728614,LOC107670677 non-coding upstream 54569 12232321 ~ 12232651 (+)
G209894 NA non-coding upstream 67667 12219301 ~ 12219553 (+)
G209887 NA non-coding upstream 78096 12208886 ~ 12209124 (+)
G209886 NA non-coding upstream 78734 12208236 ~ 12208486 (+)
G209884 NA non-coding upstream 84943 12201238 ~ 12202277 (+)
G209943 NA non-coding downstream 87455 12375907 ~ 12378084 (+)
G209944 NA non-coding downstream 89707 12378159 ~ 12378413 (+)
G209945 NA non-coding downstream 90494 12378946 ~ 12380986 (+)
G210086 NA non-coding downstream 257981 12546433 ~ 12548503 (+)
G210160 NA non-coding downstream 490797 12779249 ~ 12780136 (+)
arhgap17b LOC108279379,LOC108432202 other upstream 97150 12158703 ~ 12190070 (+)
LOC113528416 LOC108275780 other upstream 146849 12135269 ~ 12140371 (+)
tbc1d16 tbc1d16,LOC107559246,LOC107689993,LOC107670685,LOC107562324 other upstream 201162 12049407 ~ 12086058 (+)
luc7l3 luc7l3,LOC107674472,LOC107726809,LOC107654661 other upstream 709397 11567119 ~ 11577823 (+)
cdc42ep4a LOC108256079,LOC108432235,LOC103033379 other upstream 899200 11280080 ~ 11388020 (+)
ndufb10 ndufb10 other downstream 79114 12367566 ~ 12374372 (+)
znf653 znf653,LOC104961106,LOC107553636,LOC103393609 other downstream 1146929 13435381 ~ 13445686 (+)
zgc:158403 zgc:158403,LOC108258290,LOC108441004,LOC107718630,LOC107553678,LOC107661656,LOC107695678 other downstream 1175633 13464085 ~ 13493942 (+)
socs3a socs3 other downstream 2330752 14619204 ~ 14621788 (+)
LOC117598752 NA other downstream 2699634 14988086 ~ 14991450 (+)

Expression


Co-expression Network