LOC113528352 (snu13,snu13b,LOC103040872,LOC101154660,LOC105910236)


Basic Information

Item Value
gene id LOC113528352
gene name snu13,snu13b,LOC103040872,LOC101154660,LOC105910236
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 10192804 ~ 10195206 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026916863.2
CCGCTAGGAGGCAGTGTTTACAAGCCGCTCAGTGAGCACAGAGAGTAGACGACGCAGAAGAAGTCGCCTGTCCAGCGTGAAGCGTTAGCGCTACAGCTAAGTAAAGCGCGGTTGAGTGTAACACCGTgtggaaaaatcacatttacattatCATCAGTTAAATTAGTGCTTTGTCCTCCGTGAAGCACACGCCGAGAGGACGACTAGACTGTTTATCCGGAGAAGCTTTATTCTCAGACAGGAAGAATGACTGAACCGGAAGTCAATCCAAAGGCATATCCTCTGGCTGATGCCACTTTAACTAAAACCATTCTGGATTTGGTGCAACAAGCAGCCAACTATAAACAGCTGAGGAAAGGAGCTAATGAAGCTACCAAAACTCTCAATCGTGGGATCTCCGAGTTCATAGTGATGGCTGCTGATGCAGAGCCGCTGGAGATCATTCTTCATTTGCCACTGCTGTGTGAGGATAAGAACGTCCCGTATGTGTTTGTGCGCTCCAAGCAGGCCTTGGGCCGAGCGTGTGGAGTGTCCCGGCCTGTAATCGCCACCTCAGTCACTATAAAGGAGGGATCACAGCTCAAGCCTCAGATCCAGTCTGTGCAGATGGCCATTGAGAGACTGTTGGTCTGATTGAGGCTTGGGGAACTAGACAAAATGCCAACTAAAATTCTGAATGagcttgtttaattttgtttaaagcaTGGCGAAGTGTTTGGCatgatttaattttagtttGGATATTCCTGAATTTCCCTTTTCCAGGTGTACTTCCAGGTGTactatttactttaaaatgatgTATACATTGCAAGTCTTCATACATTTGGTTTTTTTAacaatttgcctttttttttttttttttttttttttacttttgtaaaaTCTGTTGATCCACTTGAACATTTTCTGCAGAATCTTTTACATGcttgtaataaatgaaatgttcacCTACA

Function

symbol description
snu13b Predicted to enable RNA binding activity. Acts upstream of or within somite development. Predicted to be located in nucleolus. Predicted to be part of box C/D RNP complex; nucleus; and small-subunit processome. Is expressed in several structures, including alar plate midbrain region; immature eye; mesoderm; nervous system; and pectoral fin musculature. Orthologous to human SNU13 (small nuclear ribonucleoprotein 13).
snu13 Enables ATPase binding activity and RNA binding activity. Contributes to snoRNA binding activity. Involved in mRNA splicing, via spliceosome. Located in dense fibrillar component. Part of U2-type precatalytic spliceosome; box C/D RNP complex; and spliceosomal snRNP complex.

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0061053 somite development biological_process
GO:0005730 nucleolus cellular_component
GO:0016787 hydrolase activity molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K12845 SNU13, NHP2L; U4/U6 small nuclear ribonucleoprotein SNU13

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026916863.2 True 956 mRNA 0.43 3 10192804 10195206

Neighbor

gene id symbol gene type direction distance location
casc3 casc3 coding upstream 266601 9917962 ~ 9926203 (+)
msl1a msl1 coding upstream 275703 9912768 ~ 9917101 (+)
si:dkey-225f5.4 LOC108258433 coding upstream 299308 9886784 ~ 9893496 (+)
igf2bp1 igf2bp1,LOC108412303,LOC107717213,LOC107667758,LOC107582884,LOC106607494 coding upstream 312919 9840890 ~ 9879885 (+)
ube2z ube2z coding upstream 365795 9814084 ~ 9827009 (+)
LOC113528384 slc25a17,LOC108412891,LOC106601749,LOC107666095,LOC107743042,LOC107548713 coding downstream 19839 10215045 ~ 10222874 (+)
helz helz,LOC107691233,LOC107665819 coding downstream 103681 10298887 ~ 10341715 (+)
lmtk2 lmtk2 coding downstream 230853 10426059 ~ 10448685 (+)
bri3 bri3 coding downstream 280148 10475354 ~ 10484206 (+)
fam20ca LOC108274115,LOC108412745,LOC107713951,LOC107584184 coding downstream 552940 10748146 ~ 10798178 (+)
G208488 col1a1a,LOC108279263,LOC107585052,LOC107740634 non-coding upstream 130839 10039409 ~ 10061965 (+)
G208504 NA non-coding upstream 309677 9864977 ~ 9883127 (+)
G208507 NA non-coding upstream 333922 9846084 ~ 9858882 (+)
G208472 NA non-coding upstream 444794 9746285 ~ 9748010 (+)
G208415 hoxb9,hoxb9a,LOC107662432,LOC107585091 non-coding upstream 453938 9737009 ~ 9738866 (+)
G208700 NA non-coding downstream 26077 10221283 ~ 10221539 (+)
G208701 dxo,LOC107752708,LOC107666098,LOC107691245,LOC107743041 non-coding downstream 30377 10225583 ~ 10226503 (+)
G208783 NA non-coding downstream 146702 10341908 ~ 10342224 (+)
G208911 NA non-coding downstream 631819 10827025 ~ 10828913 (+)
G208916 NA non-coding downstream 659949 10855155 ~ 10857015 (+)
rapgefl1 rapgefl1,LOC107717207,LOC107662398,LOC107740631,LOC107667751,LOC107585050,LOC106600822 other upstream 205031 9944306 ~ 9987773 (+)
nupr1b nupr1,LOC108413333,LOC107660958,LOC107739393,LOC107567154,LOC100692788,LOC103393451 other upstream 1129391 9061563 ~ 9063413 (+)
asphd1 asphd1,LOC107568490,LOC107755186,LOC107552472,LOC107739384 other upstream 1234704 8950466 ~ 8958100 (+)
trnas-cga_1 NA other upstream 2184393 8008186 ~ 8008411 (+)
G207480 LOC107834952 other upstream 2339295 7853191 ~ 7853509 (+)
G208781 cacng4b,LOC108259704,LOC106606650,LOC107565862,LOC107691234,LOC106601773,LOC107724746,LOC107713946 other downstream 154196 10349402 ~ 10781459 (+)
cdc42ep4a LOC108256079,LOC108432235,LOC103033379 other downstream 1084874 11280080 ~ 11388020 (+)
luc7l3 luc7l3,LOC107674472,LOC107726809,LOC107654661 other downstream 1371913 11567119 ~ 11577823 (+)
tbc1d16 tbc1d16,LOC107559246,LOC107689993,LOC107670685,LOC107562324 other downstream 1854201 12049407 ~ 12086058 (+)
LOC113528416 LOC108275780 other downstream 1940063 12135269 ~ 12140371 (+)

Expression


Co-expression Network