snrnp70 (snrnp70)


Basic Information

Item Value
gene id snrnp70
gene name snrnp70
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 3891174 ~ 3901444 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026916866.2
GGCACCGCGCCATTTTAAGAGTGAGCGCTGCACGGAGAACAAGAAAGCCAACGCAGGAGGACGCGTTTCAGTCGTTTAATCAGCGGCACCCAATCAGTAAAATTGTTCTGGGAAAATACTTCAGAAAATTAGGGAGAATTTTTTACCGTCGAGCTCGGAGATTCCCTTTGGTGTTGAATGCGGAGCTGAGGTGAACAATGACTCAGTTTCTGCCCCCGAACCTGCTGGCCCTGTTTGCCCCGCGGGATCCCATCCCGTTCCTGCCGCAGCTGGAGAAACTTCCCCATGAAAAGCACCACAACCAGCCTTACTCCGGCATCGCTCCTTTCATCAAGCACTTCGAGGATCCTCGAGATGCACCGCCACCAACAAGAGCTGAAACACGAGAGGAGAGGCTGGAAAGAAAGAGGCGCGAGAAGATGGAGAGGAGGCAAACGGTTGTAGAAACCGAGCTGAAGTTGTGGGATCCTCACAACGACACGAACGCTCAAGGGGACGCTTTCAAGACCTTATTCGTGGCTCGAATTAATTACGATACTACGGAGTCCAAACTGCGCCGTGAGTTTGAGGTCTACGGCCCCATCAAACGAATCTACATTGTGTACAACAAGAGGACTGGAAAGCCACGCGGCTACGCTTTCATCGAGTATGAACACGAGCGAGACATGCACTCGGCCTACAAGCATGCGGACGGTAAAAAGATCGATGGGCGTAGAGTTCTTGTGGATGTAGAGAGAGGTCGCACCGTGAAGGGATGGCACCCTCGTCGGCTGGGTGGAGGTCTGGGTGGTACTAGGAGAGGTGGAGCAGATGTTAACATCAAACATTCTGGTAGAGATGACACCTCCCGCTATGATGACCGACCTattggaagCGATCGGGATCGTGACCGTGGAGATCGGCGCGAGCGAAGTCGCGAACGCGACAGAGACAAGGAGCGCCCTGAGCGGCGGCGATCTCGCTCACGGGAGAGGCGCAGACGCACCCGATCACGTGAGCGTGAAAGGGCACTGGGGGGAGGCACGGATGAAAATGCCGGCCGGCGtagggacagagacagggagagaggagaaggagacGCCAAGTCACGCGAAAGAAGCCGAGAGCGCGACCGGGAACGAGATCGcaagaggaggagcaggagcagggagaggaggagggacAGGGAGCGAGGGAAGGGCGCAGAGGGAGGTGAAGAGGGCACAGGCGGACTGACTGATGGCATGATGGGAGAAGGAGGAGAGCGAGGGATGGACGAGTCTGCCATGGGTGAGCAGGGTCGCGGAGAGGAGGGAGGACCAGAGGGAGAAGAGCGAggcagagatagagacagagagagggacagagaccGGGACAGGAAGCGTAGTCACAGAGATAAAGatagagacagggacagagaaagGAGGCGGGACAGAGACCGGGACAGAGATCGTGAGCATAAGCGGGACAGGGGTGATCGTGAGCGTAGAGAGGATCGGCATGGCTCTCTGCTTCCCCCTATGGGTGAGAATGAAGGCTTGGGGAACGGAGAAGAAGGGGACGGCTCTCTCCCGCCGCAGATGGAGGAAGGTTCACAGGATGGGATGAATGCGATGATGATGGACCAGGACTCCATGCAGTCTGGAGATGGCTATGCTTCTAACGAGAACGGCTACAAGATGGAGGCCCAGGGTGATGAGTACTAAACGCTTTGGGCACGGTCTTCATgtgcagaaattaaaaaaaaaaaaaaaattaatttcctcTGACCGTTTCTATCCATGTGGTGAGGAATTAATGAGTGTCTATTCAGTCAGCCTTGTCAGAGCATGATCTGTCCACCATGAGCCATGTCCTCCAGGCTGAAATAGGAATAGCTGAACtgtgatttatatatatttttttttaatgccaccAAATAGTTTTGGCAAGGATTAACTAAAAAAATGGTGCATTGAAAGATTCCTGTATTAGTTTAACCCTTCAACtgttgtgctgtatttttgtaagAACAACACTGCAGTATAAAATCGTTATTTGATTACAGGGATTGTCGTACTGAGTTCCAGAGTTGTGTCCAATTTATctgtatttctctttattaatcAACTCCAAGCCTCCTTTCAAGGTAAGATGTGTTTAAGGTGGATGATTTTGAAAGGTATCCCAAGTGCGATGTTTCAGAGGCTTCATCATGTACAGCTTGGTCCTGATTTTCCACTTTGTGGCTCATAAGCaatggagggggaaaaaaaagacaaattagtGCTTTTAGCTGAGAATATGTTGCCATAGGTTCACAACAGGTTGCTCTTATTCTTTTGTAATTAGTCTTATTTGTTTGAAAAGAGTATGGATGCTTTGTGAACCACCTCTTCTAGTGACATTTGTTTTGGGGTTCTGTATTGTGAATTGGTTCTCTTTAATAAATGCGCTTTTTTTATGAAAA

Function

symbol description
snrnp70 Predicted to enable U1 snRNA binding activity and mRNA binding activity. Acts upstream of or within hematopoietic stem cell differentiation. Predicted to be located in nucleus and viral nucleocapsid. Predicted to be part of U1 snRNP and U2-type prespliceosome. Is expressed in central nervous system; hematopoietic stem cell; and motor neurons. Human ortholog(s) of this gene implicated in disease of mental health and systemic lupus erythematosus. Orthologous to human SNRNP70 (small nuclear ribonucleoprotein U1 subunit 70).

NR:

description
unnamed protein product

GO: NA

KEGG:

id description
K11093 SNRP70; U1 small nuclear ribonucleoprotein 70kDa

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026916866.2 True 2428 mRNA 0.50 11 3891174 3901444

Neighbor

gene id symbol gene type direction distance location
lin7b lin7b,LOC107730776 coding downstream 2703 3882128 ~ 3888471 (-)
zgc:193811 LOC108259531 coding downstream 11294 3868579 ~ 3879880 (-)
LOC113528389 tlr-20a coding downstream 130186 3756985 ~ 3760988 (-)
prkar1aa prkar1a,LOC107654492,LOC107721504,LOC107708993,LOC108274040,LOC103038385,LOC107693667 coding downstream 207851 3672980 ~ 3683323 (-)
rac3a rac3,rac3a,rac3b,LOC106610298,LOC108436959,LOC100712409 coding downstream 221872 3658456 ~ 3669302 (-)
pex11a pex11a coding upstream 3343 3904787 ~ 3907427 (-)
strada strada,LOC107693497 coding upstream 16228 3917672 ~ 3932820 (-)
mylk5 LOC108256285 coding upstream 250615 4152059 ~ 4192591 (-)
fzd2 fzd2,LOC107583044,LOC107729561,LOC107658461,LOC107721960,LOC107564008,LOC107674136 coding upstream 309785 4211229 ~ 4213733 (-)
ccdc43 ccdc43 coding upstream 325721 4227165 ~ 4233963 (-)
G205063 NA non-coding downstream 152215 3704283 ~ 3738959 (-)
G205040 dus1l,LOC102781131 non-coding downstream 259791 3630694 ~ 3631383 (-)
G205030 NA non-coding downstream 271055 3617171 ~ 3620119 (-)
G205038 NA non-coding downstream 288935 3601002 ~ 3602239 (-)
G204664 NA non-coding downstream 716897 3171262 ~ 3174277 (-)
G205145 NA non-coding upstream 47405 3948849 ~ 3957710 (-)
LOC117598833 NA non-coding upstream 88962 3990406 ~ 3990917 (-)
G205169 gfap,LOC107658466,LOC107729544 non-coding upstream 132452 4033896 ~ 4035077 (-)
G205165 NA non-coding upstream 200912 4102356 ~ 4104225 (-)
G205155 NA non-coding upstream 227697 4129141 ~ 4131967 (-)
kcnc3a kcnc3a,LOC108259249,LOC107729449,LOC108427388,LOC107693499,LOC107548332,LOC105891716 other downstream 25325 3768855 ~ 3865849 (-)
nde1 nde1 other downstream 477407 3382831 ~ 3413767 (-)
si:dkey-283b1.7 LOC108276203,LOC107737768,LOC104929916,LOC106607185 other downstream 813156 3073977 ~ 3078018 (-)
si:dkey-283b1.6 NA other downstream 851522 3034246 ~ 3039652 (-)
LOC113528062 LOC108276032,LOC108276106 other downstream 1353063 2433149 ~ 2538111 (-)
G205173 gfap,LOC103392664 other upstream 139037 4040481 ~ 4044575 (-)
dcaf7 dcaf7,LOC100702343,LOC105030232 other upstream 191469 4092913 ~ 4117643 (-)
mlx mlx,LOC107721525,LOC107601295,LOC107720011,LOC107590371,LOC107654516,LOC107688133,LOC106601136 other upstream 820973 4722417 ~ 4734902 (-)
G205633 rps11,LOC102786880,LOC107674708 other upstream 1187892 5089336 ~ 5091922 (-)
G206236 NA other upstream 1853323 5754767 ~ 5756733 (-)

Expression


Co-expression Network