LOC113528358


Basic Information

Item Value
gene id LOC113528358
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 3959057 ~ 3960638 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026916871.2
GGTGCCTGAAGTACAGTTTAAAATGGAATAACCAGCCTACATGTGTATACTTAGGATTGTTAGACTCAACAACAATGGCATTAAAACAAGTTGGTGTTTCTGTGCTGCTGTTTGTTGCCCTTGGACTGGCTGAAGTACAATGGCCAAAACTGTGGAACATTCAAGCTACTGCAAGAGCACCAGCAGTGCAGTTTGATCTTGTTCCTACTCTGAGTGTAACAGCAGAATGCAATGAGACTGCAGTGTATGTGGAAGTGAAGAAAAATCTGTTTGGAAATGGTAAACCCTTCAATATTGCTGCTCTTATGCTGGGAGGCTGTGCTGCTAAAGGGGAGGATGCTGCTTTTCAAGTCCTTATCTATGAATCTGAACTAGATGGCTGCAATAGCAAGTTGACTgtgaCTGAGGATGAACTGGTCTATGTCTTCACCCTTGTTATTGCTTCAGAGCCTTTAAGTGGTATTCCCATTCTAGAAAATGCTAGTGCTGGGGTTTCAATTGAGTGTCACTATCCAAGATTCCGTGATGCTCCCAGCAGTACTCTGATGCCTGCTTGGATACCACATGATTCTCCCCATGCTGCTGAAGaaccttttgttttctctttgagGCTCATGATGGATGACTGGATATCTGAAAGACCATCCAACCAGTACTACCTGGGTGAGCTTATAAATATTGAGGCATCAGTTCTGCCATTCAACCATGTACCCTTGCGTAGTCTTGTggacagctgtgtggccactgCTGTCCCTGACACAAATGCAGTCCCCAGATATTCCTTCATTGAGAACTATGGGTGCTTGACTGACTCAAAGATTATGGAGTCCAGTTCCCACTTTATGCCCCAAACTCAGGCAGCTAAGTTGGGGTTTCAGCTGGAGGCTTTCAGGTTTCAGCAAGGGAACAGTAGCTTGGTCTACATTACATGCATCTTGAAGGCAACAGCAGCGTCTGCCCCTCCTGATGCTGAACACAAGGCTTGCTCATTCTCTGGCAACAGATGGACTGCTGCATATGGTGCTGACCAGGTGTGCAGCTGTTGCAACAGTCACTGCAGCTTGAGGAACCAACACGTCGtcttaagcaaatagttggaactgtaactgaacccctgcttaaaatagttaactcctca

Function

GO: NA

KEGG:

id description
K19928 ZP3; zona pellucida sperm-binding protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026916871.2 True 1138 mRNA 0.46 7 3959057 3960638

Neighbor

gene id symbol gene type direction distance location
LOC113528362 NA coding upstream 8126 3948916 ~ 3950931 (+)
ddx42 ddx42,LOC102777021 coding upstream 11512 3935396 ~ 3947545 (+)
rnf113a rnf113a,LOC107693494 coding upstream 42202 3910205 ~ 3916855 (+)
LOC113527907 LOC108259599 coding upstream 202873 3747501 ~ 3756184 (+)
LOC113528497 NA coding upstream 216602 3737460 ~ 3742455 (+)
map3k3 map3k3,LOC107570753,LOC107674169,LOC107658467 coding downstream 30120 3990758 ~ 4019393 (+)
LOC117598989 LOC108191637 coding downstream 69171 4029809 ~ 4030450 (+)
gfap gfap,LOC107729544 coding downstream 73928 4034566 ~ 4044375 (+)
kcnh6a kcnh6a,kcnh6,LOC108279946,LOC108427397 coding downstream 97113 4057751 ~ 4104754 (+)
ccdc47 ccdc47,LOC107674171,LOC107729550,LOC107721963,LOC107658463 coding downstream 160216 4120854 ~ 4131475 (+)
G204832 NA non-coding upstream 76098 3853496 ~ 3882959 (+)
G204860 NA non-coding upstream 89314 3864913 ~ 3869743 (+)
LOC113528035 NA non-coding upstream 90960 3856054 ~ 3868097 (+)
G204815 NA non-coding upstream 172479 3776604 ~ 3786578 (+)
G204773 NA non-coding upstream 243477 3672984 ~ 3715580 (+)
G204912 NA non-coding downstream 145305 4105943 ~ 4107728 (+)
G204965 NA non-coding downstream 231099 4191737 ~ 4192099 (+)
G205242 NA non-coding downstream 394901 4355539 ~ 4356186 (+)
G205245 NA non-coding downstream 395680 4356318 ~ 4356536 (+)
G205250 NA non-coding downstream 398767 4359405 ~ 4360374 (+)
glyr1 glyr1,LOC107688117,LOC107590383,LOC107721499 other upstream 297893 3534289 ~ 3661164 (+)
LOC113527909 NA other upstream 758924 3192704 ~ 3200133 (+)
pyya LOC108276154,LOC108434917 other upstream 946198 3003608 ~ 3012859 (+)
LOC113528221 LOC108276032,LOC108276106 other upstream 1051014 2867768 ~ 2908043 (+)
rundc1 rundc1 other upstream 1772893 2177683 ~ 2186164 (+)
limd2 limd2,LOC107674139,LOC107658411 other downstream 6095 3966733 ~ 3986284 (+)
trnae-cuc_26 NA other downstream 10541 3971179 ~ 3971250 (+)
plekhh3 plekhh3,LOC107601293,LOC107720008,LOC107688129 other downstream 659580 4620218 ~ 4670646 (+)
retreg3 fam134c other downstream 731839 4692477 ~ 4711316 (+)
psmc3ip psmc3ip other downstream 752235 4712873 ~ 4721468 (+)

Expression


Co-expression Network