nptx2a (nptx2,LOC108275595,LOC107665931,LOC107724745,LOC107713953)


Basic Information

Item Value
gene id nptx2a
gene name nptx2,LOC108275595,LOC107665931,LOC107724745,LOC107713953
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 10546321 ~ 10557800 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026916885.2
GTGAggctgcctgtctctctgcagcaGCAGTGACTGGGAAACAACTGTGTTTGGACTGTTTATCTGACTAAACACAATAGAACTCTGCAATTCGGATTTTTTGTTGCAGATAATATTAAGCAGTGGTTCTTAGTCTGTGCTTGTTTTTGAGCTGAAAAACCGGCACTTGCTGCGCGCGGCACTAAGAGAAGCATTGGCTTTAAACAACTACTTTTGATATGTTGTTGTGTTATATATGTATAGAAATGAGGGGAATTAGATGTTAGTGACTTTTCGGGAAGGAGGACGTTCTcttgcacttttgttttttcccccctctcttgCACTCCAAGCGCACGCGCTCGTGGCGAACAAACTGAACCGCTTCTCTCGCGCTGCAGCTATGATCACGTTCTTTGCTGCGCTCCTGTGCGCTCGCGCGCTGGCTGCTGGAAAGCTGGCGCTCGCTGATGGCCAGCCTCAGGGCGAGCGCTTCGTGTGCACCGCCGTGCCTGCGGGCGAAGACCTCAGCTGCCCGGTGGACACGGATAACCGCGTGCAGAGCGCGAGCCCTCAGGAGGACGAGTTCAGGAGCACGATCGTGCAGCTCCGGGAGACCGTGCTGCAGCAGAAGGAGACCATCGCGAGTCAGCAGGGCACCATCAAGGAACTCAACTCCAAACTTTCGCGCTGCGAGGCCGCGGCACACGACACGCGAGACAGCAAGTGGCGCGGAGGCGCGCGCAGGAAGGACTATGGGAAGAACACTATGGGCGATCTGCCGCGCGACCCCGCGGAAACCATCGAGCAGCTGGGCAAGACCATGCAAGGGCTGAAGGACCGACTGGAAAACTTGGAGCAGTTGCATGCCAATGCATCTGGTGCGCCGTTCCCCAACGAACTGCGTGACCTGCTAAAGCGGCGGCTGGGGGACCTCGAGAGCCAATTGCTGAGGAGGGTAGCTGAGCTTGAGGAGGAGAAGACTCAGCTATACAACGAGACAATCGCCCACCGGCAGCACACAGAGAACACGCTCAACTCGCTGCTGGAGAGGATCACAGAGCTGGAGAGAAGCAACAGCGCATTTAAATCCCCAGAGGACTTCAAGGTTTCTCTGCCCTTGCGCACAAACTACCTCTATGGCCGCATCAAGAAGAGTCTACCAGAAATGTATGCCTTCACCGTGTGTATGTGGCTCAAGTCCAGCGCTAGTCCTGGCATTGGAACTCCGTTCTCATACGGAGTCCCTGGACAAGCCAATGAAATTGTGCTGATAGAATGGGGCAACAATCCCATCGAGCTACTTGTCAATGACAAGGTGGCTCAGCTGCCTTTATCAGTGGGCGACGGCCGATGGCATCACATCTGCATCACCTGGACGACCAGAGACGGCCTCTGGGAGGCCTATCAGGATGGCGAGAGGCTGGGCACTGGGGAGAACTTGGCCCCATGGCACCCAATTAAACCTGGAGGAGTGATCATACTGGGTCAAGAACAGGATATTGTTGGGGGAAGGTTTGATGCCACGCAGGCTTTCGTAGGAGAGCTAAGCCACTTCAACATGTGGGATCGGGTTCTCCGCTCTACAGACATCTCTGGCATGGCCAACTGCTCAGCCTACATGCCAGGTAATGTCGTGCCCTGGATAGACGCCAATGTCGAGGTTTTCGGAGGAGCCACAAAAGCAGCACTGGAGATATGCGAGGACCGACTTTTTGACTCGTAAGATTGACCCTGCTTATATGGATCCAATATTATTTTTTGGAGGTAAAACAAAACACCTCACCATGCTGCTTTGGGACCATTGTGGAGAGACAGTCATTTTATGAAACAGTATTCACTGTGCTTATATCATTCTCTCTGGTggatttctcctcttttttgctgtttcttttttgttgtcaGCAAGGTCAATGATTGAAGTAATTGTGGcttgtgaaatataaaaaacaaattcagaacattccagtttaaaaatatttgaacacGTGCAAGCATAAGCTTCTTGTCAATGTTAGATATGTTTTTGTGTTGcacacagctaaaaaaaaaaaaaaaaaaaattatgaatttatTATGAGCAGAGGAGTCACTGGATTCTGGAGTACTGCTGTATGATCGAACTGCATGAAGGTTTACATTTAAGTTCATTTTAATGTCCTGTACTTGTAGAAACAAGCATTTAAAGCACCTTCATCAAACGGAGGGAACCTAAGACAGGGCTTGAGCAGAAGCACTCTGCTCTTTATATCATGCATGAATGAAAAATTCTCTTCAAATATGCAAAGCTGTCTACGCACCCAAATGTGACAGAATATGATCAATCAGGAGCTTAGTGGAAGTGTGCATACACTTTCTCGAGCATTTTATGGATCCAGGAGGACAGAGATGTGGAAGGAGGGAGATATTGATGAACAGAATCAGCACATTATGTTTATGAAATTGAAAGAATGTTAACCATTGATTGTTTTGCAAAATACTAGCTTTATGAATAAAAGGGTCACAgacactttttatacatttttataaatggaTTTTTGTCAAGGAAGATGAGTCTGACTTTAACCAGAATAATTGTGTAGCCCTTAATTCTGTTTGTGGTCTTGGAAACTCCAGACCCTCTTTAAAAAGCTATGatgataaatgtaataatgcTTCGTCAGATGGAAACCTAATTATGTCAGAATTAACCAAAAACTTTGATTTCTATACTGAAAAttacactgaaaatgaaagtttgggtcttatatttgtatttatgttcATTTATAGCTCTTATAACATATGAACCACGCTATGTTGCATTTGTAGGTCTAGCAGTTATGTTTTATGGTCATTTACAGATCTCATCACTTCTGTGAACCTCCATATGCACTTCTAATTTGCAGCAATTAAGAGGATTAaggcactgattattttctgtcTACTGGGGTTTCATTAGgtgcaaagaaagaaaacaagatgaAAATAGAGAGTTGATTTGTAAattcttgttattattttattattttattatattatgaaataGTAATGCACTGGGGTCTCTGTTTACCCCCACACAATGAGCAAGCAAGAGAAATCTCAACTGAACATGAATGATAGTCTACTAGAGGAGATGGATGTGGATTTAAAACACTTGTTTAATGATGTACAAAgcactggaaaaaaatgaataagctTTTCTGTGGTGATATAAAAGAAGTATTGATGGATTTTAATGAAATAGAGGTTGCTTGCGTTCTCTTCATTTACGACTACAGAAAGGTTGAATGCATTATCCTCTCAAAAGCTGAAAGAGGaccatgcattatttttgtacagaGTCCATTAACGCTTGCTAGTTTTAGAGTATTTATTGAACTGTACAGTGATGTTTCAATAAAGCTGTGCAATAGC
>XM_034309701.1
GTGAggctgcctgtctctctgcagcaGCAGTGACTGGGAAACAACTGTGTTTGGACTGTTTATCTGACTAAACACAATAGAACTCTGCAATTCGGATTTTTTGTTGCAGATAATATTAAGCAGTGGTTCTTAGTCTGTGCTTGTTTTTGAGCTGAAAAACCGGCACTTGCTGCGCGCGGCACTAAGAGAAGCATTGGCTTTAAACAACTACTTTTGATATGTTGTTGTGTTATATATGTATAGAAATGAGGGGAATTAGATGTTAGTGACTTTTCGGGAAGGAGGACGTTCTcttgcacttttgttttttcccccctctcttgCACTCCAAGCGCACGCGCTCGTGGCGAACAAACTGAACCGCTTCTCTCGCGCTGCAGCTATGATCACGTTCTTTGCTGCGCTCCTGTGCGCTCGCGCGCTGGCTGCTGGAAAGCTGGCGCTCGCTGATGGCCAGCCTCAGGGCGAGCGCTTCGTGTGCACCGCCGTGCCTGCGGGCGAAGACCTCAGCTGCCCGGTGGACACGGATAACCGCGTGCAGAGCGCGAGCCCTCAGGAGGACGAGTTCAGGAGCACGATCGTGCAGCTCCGGGAGACCGTGCTGCAGCAGAAGGAGACCATCGCGAGTCAGCAGGGCACCATCAAGGAACTCAACTCCAAACTTTCGCGCTGCGAGGCCGCGGCACACGACACGCGAGACAGCAAGTGGCGCGGAGGCGCGCGCAGGAAGGACTATGGGAAGAACACTATGGGCGATCTGCCGCGCGACCCCGCGGAAACCATCGAGCAGCTGGGCAAGACCATGCAAGGGCTGAAGGACCGACTGGAAAACTTGGAGCAGCAGTTGCATGCCAATGCATCTGGTGCGCCGTTCCCCAACGAACTGCGTGACCTGCTAAAGCGGCGGCTGGGGGACCTCGAGAGCCAATTGCTGAGGAGGGTAGCTGAGCTTGAGGAGGAGAAGACTCAGCTATACAACGAGACAATCGCCCACCGGCAGCACACAGAGAACACGCTCAACTCGCTGCTGGAGAGGATCACAGAGCTGGAGAGAAGCAACAGCGCATTTAAATCCCCAGAGGACTTCAAGGTTTCTCTGCCCTTGCGCACAAACTACCTCTATGGCCGCATCAAGAAGAGTCTACCAGAAATGTATGCCTTCACCGTGTGTATGTGGCTCAAGTCCAGCGCTAGTCCTGGCATTGGAACTCCGTTCTCATACGGAGTCCCTGGACAAGCCAATGAAATTGTGCTGATAGAATGGGGCAACAATCCCATCGAGCTACTTGTCAATGACAAGGTGGCTCAGCTGCCTTTATCAGTGGGCGACGGCCGATGGCATCACATCTGCATCACCTGGACGACCAGAGACGGCCTCTGGGAGGCCTATCAGGATGGCGAGAGGCTGGGCACTGGGGAGAACTTGGCCCCATGGCACCCAATTAAACCTGGAGGAGTGATCATACTGGGTCAAGAACAGGATATTGTTGGGGGAAGGTTTGATGCCACGCAGGCTTTCGTAGGAGAGCTAAGCCACTTCAACATGTGGGATCGGGTTCTCCGCTCTACAGACATCTCTGGCATGGCCAACTGCTCAGCCTACATGCCAGGTAATGTCGTGCCCTGGATAGACGCCAATGTCGAGGTTTTCGGAGGAGCCACAAAAGCAGCACTGGAGATATGCGAGGACCGACTTTTTGACTCGTAAGATTGACCCTGCTTATATGGATCCAATATTATTTTTTGGAGGTAAAACAAAACACCTCACCATGCTGCTTTGGGACCATTGTGGAGAGACAGTCATTTTATGAAACAGTATTCACTGTGCTTATATCATTCTCTCTGGTggatttctcctcttttttgctgtttcttttttgttgtcaGCAAGGTCAATGATTGAAGTAATTGTGGcttgtgaaatataaaaaacaaattcagaacattccagtttaaaaatatttgaacacGTGCAAGCATAAGCTTCTTGTCAATGTTAGATATGTTTTTGTGTTGcacacagctaaaaaaaaaaaaaaaaaaaattatgaatttatTATGAGCAGAGGAGTCACTGGATTCTGGAGTACTGCTGTATGATCGAACTGCATGAAGGTTTACATTTAAGTTCATTTTAATGTCCTGTACTTGTAGAAACAAGCATTTAAAGCACCTTCATCAAACGGAGGGAACCTAAGACAGGGCTTGAGCAGAAGCACTCTGCTCTTTATATCATGCATGAATGAAAAATTCTCTTCAAATATGCAAAGCTGTCTACGCACCCAAATGTGACAGAATATGATCAATCAGGAGCTTAGTGGAAGTGTGCATACACTTTCTCGAGCATTTTATGGATCCAGGAGGACAGAGATGTGGAAGGAGGGAGATATTGATGAACAGAATCAGCACATTATGTTTATGAAATTGAAAGAATGTTAACCATTGATTGTTTTGCAAAATACTAGCTTTATGAATAAAAGGGTCACAgacactttttatacatttttataaatggaTTTTTGTCAAGGAAGATGAGTCTGACTTTAACCAGAATAATTGTGTAGCCCTTAATTCTGTTTGTGGTCTTGGAAACTCCAGACCCTCTTTAAAAAGCTATGatgataaatgtaataatgcTTCGTCAGATGGAAACCTAATTATGTCAGAATTAACCAAAAACTTTGATTTCTATACTGAAAAttacactgaaaatgaaagtttgggtcttatatttgtatttatgttcATTTATAGCTCTTATAACATATGAACCACGCTATGTTGCATTTGTAGGTCTAGCAGTTATGTTTTATGGTCATTTACAGATCTCATCACTTCTGTGAACCTCCATATGCACTTCTAATTTGCAGCAATTAAGAGGATTAaggcactgattattttctgtcTACTGGGGTTTCATTAGgtgcaaagaaagaaaacaagatgaAAATAGAGAGTTGATTTGTAAattcttgttattattttattattttattatattatgaaataGTAATGCACTGGGGTCTCTGTTTACCCCCACACAATGAGCAAGCAAGAGAAATCTCAACTGAACATGAATGATAGTCTACTAGAGGAGATGGATGTGGATTTAAAACACTTGTTTAATGATGTACAAAgcactggaaaaaaatgaataagctTTTCTGTGGTGATATAAAAGAAGTATTGATGGATTTTAATGAAATAGAGGTTGCTTGCGTTCTCTTCATTTACGACTACAGAAAGGTTGAATGCATTATCCTCTCAAAAGCTGAAAGAGGaccatgcattatttttgtacagaGTCCATTAACGCTTGCTAGTTTTAGAGTATTTATTGAACTGTACAGTGATGTTTCAATAAAGCTGTGCAATAGC

Function

symbol description
nptx2 Predicted to enable carbohydrate binding activity and metal ion binding activity. Involved in regulation of postsynaptic neurotransmitter receptor activity. Is active in glutamatergic synapse.

NR:

description
PREDICTED: neuronal pentraxin-2-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026916885.2 False 3375 mRNA 0.45 5 10546321 10557800
XM_034309701.1 True 3378 mRNA 0.45 5 10546321 10557800

Neighbor

gene id symbol gene type direction distance location
baiap2l1b LOC108276911,LOC108412765 coding downstream 19035 10485735 ~ 10527286 (-)
pvalb5 LOC108278987,LOC108412247 coding downstream 119093 10420040 ~ 10427228 (-)
LOC113527991 LOC108279005,LOC103031037,LOC108412819,LOC108273406,LOC107665844 coding downstream 128406 10415901 ~ 10417915 (-)
pvalb4 LOC100305042,LOC107724737,LOC108412813,LOC107665849,LOC107548706,LOC103030720 coding downstream 131553 10413005 ~ 10414768 (-)
pvalb8 prvu,pvalb8,LOC103030409,LOC108412252,LOC107691229,LOC107548708,LOC103141687,LOC103141679,LOC103469263 coding downstream 139241 10403780 ~ 10407080 (-)
srebf1 srebf1,LOC107691218 coding upstream 289901 10847701 ~ 10869084 (-)
LOC113527942 tom1l2 coding upstream 314234 10872034 ~ 10898540 (-)
tbl3 tbl3 coding upstream 385438 10943238 ~ 10962840 (-)
rcvrna LOC108260894,LOC108412638,LOC107583783,LOC107725264,LOC107690016,LOC107555668,LOC107755173 coding upstream 451487 11009287 ~ 11011550 (-)
LOC113528015 NA coding upstream 465872 11023672 ~ 11025804 (-)
G208980 NA non-coding downstream 27374 10518342 ~ 10518947 (-)
G208964 lmtk2 non-coding downstream 95781 10447736 ~ 10450540 (-)
G208951 NA non-coding downstream 204099 10341911 ~ 10342222 (-)
G208771 NA non-coding downstream 255436 10221710 ~ 10290885 (-)
G208758 NA non-coding downstream 359069 10187036 ~ 10187252 (-)
G208998 NA non-coding upstream 75735 10633535 ~ 10634150 (-)
G209189 NA non-coding upstream 531213 11089013 ~ 11144984 (-)
LOC113528410 NA non-coding upstream 660859 11218659 ~ 11221378 (-)
G209529 NA non-coding upstream 831160 11388960 ~ 11389231 (-)
G209538 NA non-coding upstream 842922 11400722 ~ 11401423 (-)
tecpr1b LOC108276900 other downstream 75803 10450724 ~ 10470518 (-)
hoxb8a hoxb8a,LOC108278530,LOC108413053,LOC103044850,LOC107582957,LOC107662386,LOC107585089 other downstream 813755 9729851 ~ 9732566 (-)
copz2 copz2,LOC108260256,LOC108413159,LOC107740614,LOC107662379,LOC107710054,LOC107585036,LOC107687783,LOC105013247,LOC108246742,LOC106527321,LOC106912034 other downstream 1071843 9464331 ~ 9474478 (-)
prr15la LOC108273894,LOC108412372 other downstream 1126737 9409804 ~ 9419584 (-)
dnal4a dnal4,LOC108261343,LOC108412416,LOC108436609,LOC106591471 other downstream 1342681 9196496 ~ 9203640 (-)
hmox1a hmox1,LOC108432221 other upstream 1084357 11642157 ~ 11647997 (-)
zgc:162612 foxd1,LOC108278341,LOC107757501 other upstream 1142049 11699849 ~ 11701172 (-)
LOC113528332 hs3st6,LOC102795972 other upstream 1739976 12297776 ~ 12315498 (-)
msrb1a msrb1 other upstream 1776054 12333854 ~ 12339269 (-)
tom1 LOC108260160 other upstream 1988533 12546333 ~ 12559213 (-)

Expression


Co-expression Network