clpp (clpp,LOC107753176,LOC107590418,LOC107689627)


Basic Information

Item Value
gene id clpp
gene name clpp,LOC107753176,LOC107590418,LOC107689627
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 18829293 ~ 18836201 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026916887.2
CAGACTTTGCGTCATCACGTGACAGGTCAAAAGAACTACATCCGGGGCAGGCGGTTGGGTCAAAAGGAGAGGTTTTGTACTTTATAAACATCATGTTGTTACGAAGAgtgttacagtgtagtgtatCTGCACTGAAGAGCAAGCATTCATTTCATCACAGTGCGTCGTGGAGAAATCCTCTCATCCCCATCGTTATAGAACAGACAGGCCGAGGGGAACGTGCCTACGATATTTACTCACGCCTTTTGAGGGAGAGAATAATCTGTGTAATGGGTCCAATTGACGACTCAGTGGCAAGTCTGGTGATCGCACAGCTGCTTTTCCTTCAGTCAGAGAGCAACAACAAGCCTATTCACATGTACATCAACAGTCCCGGTGGTGTGGTTACAGCAGGGCTGGCAATCTATGACACTATGCAGTACATCCTCAACCCGATCTCTACATGGTGTGTAGGACAGGCTGCTAGCATGGGCAGCTTACTGCTGGCTGCAGGCACTGCGGGTATGAGGCACTCACTGCCCAACGCCCGCATAATGGTGCACCAGCCTTCGGGAGGGGCCAGGGGACAAGCAACAGACATCGCCATCCAGGCCGAGGAGATTCTCAAGCTTAAGAGACAGATTAACAACATCTACTGTAAACATACAGGACAGCCTCTGGAAACTATAGAGAGCGTGATGGAGAGAGACCGATACATGAGTCCCATGGAGGCTCAAGACTTTGGGATTATTGACAGGGTCCTGGTCCACCCTCCCCAGGCTGGGCAGGATGAGCCAGAGCTGGTCCAGAAGGAACCAACCACCTCAGCCAGCCCCTCTTCCCCCTCCCAGCCCTCAGTCTCAGAGCTGGCCCAGTCTGGGGCCAGTCCACCTTCTTCTTACAAACCTGAACCGTGACATGGAAGAGCGGTCCGTGATCAGGCTCAGCCACTGGTACTGTCTCTTACAATGGGATAGGATATTAGAGTACACTTGTTCCTCTCTGATATCCAAATGTGAGCCTGTGTTGTGTGTATCACACTGTACTGAGCAAGCCTCATCCTGGGACAGGAATGATTGACAAAATGAAGTCAAAACATTATGGACAAGTATATAACAATATGGCACTTTGTCTTACTCATATGTGATGTACAAAAAGCCTTGTGATTTTACTAGTCAGGATCACCAATAAAAACACCACCTgaagtgta

Function

symbol description
clpp Predicted to enable ATP-dependent peptidase activity; ATPase binding activity; and serine-type endopeptidase activity. Predicted to be involved in protein quality control for misfolded or incompletely synthesized proteins. Predicted to act upstream of or within proteolysis. Predicted to be part of endopeptidase Clp complex. Human ortholog(s) of this gene implicated in Perrault syndrome. Orthologous to human CLPP (caseinolytic mitochondrial matrix peptidase proteolytic subunit).

NR:

description
PREDICTED: ATP-dependent Clp protease proteolytic subunit, mitochondrial

GO: NA

KEGG:

id description
K01358 clpP, CLPP; ATP-dependent Clp protease, protease subunit

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026916887.2 True 1189 mRNA 0.49 7 18829293 18836201

Neighbor

gene id symbol gene type direction distance location
yipf2 yipf2 coding upstream 27476 18793304 ~ 18801817 (+)
tnrc6c1 tnrc6c,LOC107724432 coding upstream 131700 18633498 ~ 18697593 (+)
sept9a sept9,LOC108411966 coding upstream 270401 18472384 ~ 18558892 (+)
LOC113528424 NA coding upstream 378132 18449286 ~ 18451161 (+)
tac4 NA coding upstream 460704 18360781 ~ 18368589 (+)
rgs9a rgs9,rgs9a,LOC108278703,LOC108438013,LOC107590386,LOC107721500,LOC107719993 coding downstream 41473 18877674 ~ 18899981 (+)
engase engase coding downstream 102370 18938571 ~ 18954755 (+)
coil NA coding downstream 135197 18971398 ~ 18980644 (+)
rab11fip4a rab11fip4,rab11fip4a,LOC108274243,LOC108436969,LOC107601264,LOC107654480,LOC107719982,LOC107688103 coding downstream 145672 18981873 ~ 19026526 (+)
suz12a LOC108278724,LOC108436970 coding downstream 246397 19082598 ~ 19097768 (+)
G213221 NA non-coding upstream 115667 18706417 ~ 18713626 (+)
G213191 NA non-coding upstream 263511 18517313 ~ 18565782 (+)
G213192 NA non-coding upstream 294949 18530359 ~ 18534344 (+)
G212903 NA non-coding upstream 365270 17964793 ~ 18464023 (+)
G213244 NA non-coding downstream 10015 18846216 ~ 18898291 (+)
G213314 NA non-coding downstream 122829 18959030 ~ 18960740 (+)
LOC117598754 NA non-coding downstream 243261 19079462 ~ 19082157 (+)
G213475 NA non-coding downstream 271009 19107210 ~ 19161120 (+)
G213498 NA non-coding downstream 435130 19271331 ~ 19271589 (+)
zgc:163143 NA other upstream 394765 18425179 ~ 18434528 (+)
LOC113528171 NA other upstream 413946 18409841 ~ 18415347 (+)
LOC113528485 prkar1b,LOC107661853,LOC107653458 other upstream 486333 18183693 ~ 18342960 (+)
cenpx cenpx other upstream 1096287 17698673 ~ 17733006 (+)
srl srl,LOC108261333,LOC107695714,LOC107661647,LOC107718567,LOC107553668 other upstream 1716137 17087284 ~ 17113156 (+)
smim22 NA other downstream 78525 18914726 ~ 18919942 (+)
G213491 NA other downstream 307873 19144074 ~ 19145240 (+)
gng13b NA other downstream 465153 19301354 ~ 19313218 (+)
LOC113528521 tnrc6a,LOC107719974,LOC107590441,LOC107721518,LOC107654452,LOC107688138 other downstream 537035 19373236 ~ 19455034 (+)
LOC113528458 LOC108275785 other downstream 1036875 19873076 ~ 19911732 (+)

Expression


Co-expression Network