LOC113528379 (LOC108274113)


Basic Information

Item Value
gene id LOC113528379
gene name LOC108274113
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 8986572 ~ 8990189 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026916898.2
CGGATTTCTTTTGTAAATACGTGACGTATTCCAACCCGGAAGCAAACCCACCGTGGTATATGGATATGACGTAGAAATCTGTCTGccgctgctttttaaaaaaacaaaacaaaacaaaacatggagTCTATATTTTGGCCGATGTTTCTTTTGCAGTTTTTACTGCTGCAAATGTCATATAATGCTGCCCTTCTGCAAGCTGTCTCTATTTTATTGCAAAGGCGCAGGCGCGCGTTCCTGGAGCGCGCGGCCGCGCTCGGGCCCAGTGTGCGTCTTCCTCCGCTCCCGACCAAAAGCCGCTCGTGCTGGATGCGCGTGCGGAGTCGGGACTGGTGGGAGAGAGTGGTGCTGCGGGAATTCTCCGACGCAGAATGGAGAgagcacttcaggatgtgtcGCAGGTCGTTTGTGAAGCTGTGTGACCTGATGAAGGACGTCATGAGCCCCGGGGAGATGACCGTGCGTCCCGCGATCCCGTTAGAAATGCGCGTGGCGATAGCGCTGTACAAGCTCGGCGGCTGCGGGGAGTACAGGTCGATCGCGTACCGCTTTGGCGTGCATAAGACCACGGTGATGAAATTTGTTTACATGTTCTGTAAAGGCATGGTAAACCAAGCGATACGACACTTCATCAAAGTGCCGAGCCTGCAGGAAGCCTGCGCCATCGCCGAGCGCTTTGAGAGCAAGTTCTGTGTTCCTCAGGTTATAGGATGTGTTGATGTAACCCACATCCCGGTTCTGGCGCCCAGTGATGGCTACATGAATTTTCTCAACCGTAAAGGTTGGACATCTTATGTGCTGCAAGGCGTCGTTGATGACACTTATTGCTTCTGGAGTGCGAGCTGTAAAGTTCCTGGAGGTGCTCATGATGCCACTGTGTTTAAGCAATCCCAGCTGTTCAGCATGGCGCACCTTCTTCCTAAGCATACTTGCGACATTGGTGGAACCCCCGTCAACTTCGTTGTTCTTGGTGACACAGCCTACCCACTCCTGGAATGGCTCATGAAGGCGTATACCCCCAGTCCTAGTCTAACCCCTCAGCAAAATTCCTTTAACATCTACCTTAGTGATGCAAGAGCACCAATGGAAATTGCCTTTGGGAGGTTGAAAGCAAGATGGCGGGTTCTTCTGAAGAGAAGTGACTTCCACTACACCTTTTCACCATATGTTGCAATAACTTGCTGTGCGCTGCACAATTTCTGCGAGAGGGAAGAGGAATCTTTCGGTCAAGCCTGGATGGAAGAGGCTGCTGCTTTGGAGAGAGCCGTGCCGCAGCCGACGACACAGTCATATACACAATCGAGTAAAGCCGGTGAAGCTGTAAGGCGGGTCCTCACAGAATATGTGGCCAGCAATTTTCCTCTTCGCATGCAAGAACAATAAACACGGTCTGGTTTGTAGAGGACattgtgaatatttatttagttttatacttGGTTTGATGAAGTTTTCACTTATTAtcaaaatgtagtttttttggTAAAGCATTGCTGACTAATTGCTGCTTTGTAATAAAGCATTGCTGACTGAACACTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026916898.2 True 1537 mRNA 0.49 3 8986572 8990189

Neighbor

gene id symbol gene type direction distance location
cabp5b LOC108274992,LOC108410601,LOC107568513,LOC107552460,LOC107755172,LOC107689105,LOC107661251 coding upstream 20292 8962148 ~ 8966280 (+)
LOC117598844 NA coding upstream 65079 8916948 ~ 8921493 (+)
LOC113528195 NA coding upstream 71249 8909670 ~ 8915323 (+)
LOC113528196 NA coding upstream 81908 8902728 ~ 8904664 (+)
LOC113528069 NA coding upstream 83895 8896618 ~ 8902677 (+)
sh2b1 sh2b1,LOC108410604,LOC102776240,LOC104967735 coding downstream 3329 8993518 ~ 9006845 (+)
atxn2l atxn2l coding downstream 19396 9009585 ~ 9021533 (+)
doc2a doc2a,LOC107739394,LOC107552479,LOC107689068,LOC107754561,LOC107567185 coding downstream 84780 9074969 ~ 9099241 (+)
baiap2l2a LOC108258393 coding downstream 242814 9233003 ~ 9245784 (+)
csf2rb NA coding downstream 309912 9300101 ~ 9312782 (+)
G208105 LOC107552474,LOC107739385,LOC107754658 non-coding upstream 3261 8982027 ~ 8983311 (+)
G208004 NA non-coding upstream 112280 8851803 ~ 8874292 (+)
G207932 NA non-coding upstream 181139 8804488 ~ 8805433 (+)
LOC113528294 zwi non-coding upstream 214096 8752715 ~ 8772476 (+)
G207980 fam57b non-coding upstream 218667 8764526 ~ 8767905 (+)
G208120 NA non-coding downstream 31986 9022175 ~ 9022947 (+)
G208122 NA non-coding downstream 37100 9027289 ~ 9027537 (+)
G208124 NA non-coding downstream 39482 9029671 ~ 9029875 (+)
G208125 NA non-coding downstream 41204 9031393 ~ 9031921 (+)
G208132 NA non-coding downstream 51605 9041794 ~ 9044122 (+)
asphd1 asphd1,LOC107568490,LOC107755186,LOC107552472,LOC107739384 other upstream 28472 8950466 ~ 8958100 (+)
trnas-cga_1 NA other upstream 978161 8008186 ~ 8008411 (+)
G207480 LOC107834952 other upstream 1133063 7853191 ~ 7853509 (+)
spsb3a spsb3,spsb3a,LOC107689049 other upstream 1664607 7309207 ~ 7321965 (+)
LOC113528597 gjc1,LOC108412533,LOC107754260,LOC107731105,LOC107567456,LOC107653474,LOC107570945,LOC107690314 other upstream 1854605 7108178 ~ 7131967 (+)
nupr1b nupr1,LOC108413333,LOC107660958,LOC107739393,LOC107567154,LOC100692788,LOC103393451 other downstream 71374 9061563 ~ 9063413 (+)
rapgefl1 rapgefl1,LOC107717207,LOC107662398,LOC107740631,LOC107667751,LOC107585050,LOC106600822 other downstream 954117 9944306 ~ 9987773 (+)
G208781 cacng4b,LOC108259704,LOC106606650,LOC107565862,LOC107691234,LOC106601773,LOC107724746,LOC107713946 other downstream 1359213 10349402 ~ 10781459 (+)
cdc42ep4a LOC108256079,LOC108432235,LOC103033379 other downstream 2289891 11280080 ~ 11388020 (+)
luc7l3 luc7l3,LOC107674472,LOC107726809,LOC107654661 other downstream 2576930 11567119 ~ 11577823 (+)

Expression


Co-expression Network