pitpnbl (pipnb,LOC108410611,LOC103031125,LOC107552474,LOC107739385,LOC105028335,LOC106600642,LOC107754658)


Basic Information

Item Value
gene id pitpnbl
gene name pipnb,LOC108410611,LOC103031125,LOC107552474,LOC107739385,LOC105028335,LOC106600642,LOC107754658
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 8973287 ~ 8983377 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026916899.2
ACCCtcgaagccccgcccactttccTGATGACACACGCCAACGCGCCTGTCCAATTTCCGCCGACTGAGAGCTTCTTGTTGGATGTCCGGTTCTGTGCGGCTTCGGCATGGTACTCGTCAAAGAATATCAAGTGGTGTTGCCATGCTCAGTAGAAGAGTACCAGGTTGGCCAGCTGTACTCGGTTGCGGAGGCAAGTAAGAACAACACAGGTGGGGGCGAAGGGATTGAAGTCCTCCGAAATGAACCGTACGAGAAGGAAGGGGAGAAGGGCCAGTACACCCACAAAATCTACCACATACACAGCAAGGTGCCCACCTTCATTCAGATGGTTGCCCCAGAGGGAGCGCTGGTGTTTCACGAGAAAGCCTGGAACGCCTATCCTTACTGCCGCACCATCGTTACAaacgAGTACATGAAAGATGACTTTTTCATTAAGATCGAGACCTGGCACAAACCTGACTTGGGAACAACTGATAATCCTCATGGTCTTCCCACTGAAGAGTGGGAGGAGACTGAAGTAGTGCCGATCGATATCGCCGATCGCTCTCAGGTGGATGATTCGGACTACAAGCCAGAGGAGGATCCTGCTCTCTTTCACTCCGAGAAGACTGGCAGGGGGCCACTGGGACCAGGATGgaagAAGGAGCTTCATAACAGTAACTGTCCCTATATGACTGCGTACAAGTTGGTGACTGTGCATTTTCGCTGGTGGGGTCTGCAGGGCCGTGTGGAGAACTTCATTCACAAGCAGGAGAAGAGGCTCTTTACTAATTTTCACAGGCAGCTGTTCTGCTGGCTGGACCGCTGGGTGGACCTGACCATGGACGACATCCGCAGGATGGAGGAGGAGACGCAGCGGGAACTGGACCAGATGCGTAACCAGGGATCGGTGAGAGGAATGAAAGCAGGAGATGACTAGAGTAAGACCGGGCGAGGAATGGAAAGAAACCCAGGGCTACTTTTAATTTTACCTCCTTCAGTCCTCACATGGCCGATCACAATGTGCCACTTCACCAAGCCCTTTTGAACAGGAAACTGTCATCTTTTACCCAGGAAGTGTCCGTTATCTTGtgcgagagagtgtgtgtgcgcgtgcgtgcgtgcacgcacatgtgtgtaaaatgtgcgTGTGCATTTGTGCCGGTGCGGTTTGCCTTACATGACCTCATCATTTGCTGCCAAATTCTTTTGGATTTTACttcaaatgtgttaaataatgtcagcatttctttttataattaAGTATTATAACTGTTCTACGGTTTTTGGCTTATTTTGCAACCATCAGCTTTGTACTGAGCGTGCCAGTGGGGTCCTAAGGGCCAATCAAGTTTTACAAGGACGGTTTGGGGGTGCATTTCACTAAACTTGTATTtcaaacatgaataaacaaCTAAGTAATTTACTTCTTATTACAATTAAATTTGAGTCTGTCTGTGAACTTTTCAATGGGAAGTTAATGTACACTACAAGAAAAGGGCATGTGTAATAAACCAGTACACAAGTCATTGAAACAAAATGTATGCATAATGCTTGTTTTCCTCATATGAAACTCAAAGCACGATGGACAGAGCTTCTGTTaggttttctcttttttttcgtTGGATTCCTCTCTGCACTGAAGGCGTGACTCAGTGTGAGCGTCCTCGTTGCTGGGTGAGAGGAGCTGTTTGTAGATGAGACTCTTTTTAACCTCAAGAAGCGTTCCCACTTTTGACTGACATCTGGCATGCCAAGCCTCGCCACTTGGCTGAGGCAAACCCCATCTTTTGGAGCTGAGTCTGATTTACAATAAtgtaacaacaaaataaaaccaacatCATTGACTGTCA

Function

NR:

description
phosphatidylinositol transfer protein beta isoform-like

GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0015914 phospholipid transport biological_process
GO:0015695 organic cation transport biological_process
GO:0015697 quaternary ammonium group transport biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0005802 trans-Golgi network cellular_component
GO:0008525 phosphatidylcholine transporter activity molecular_function
GO:0008526 phosphatidylinositol transfer activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026916899.2 True 1833 mRNA 0.47 11 8973287 8983377

Neighbor

gene id symbol gene type direction distance location
sez6l2 sez6l2,LOC107660756 coding downstream 19968 8937563 ~ 8953319 (-)
kctd13 kctd13,LOC107739382,LOC107567055,LOC107552471,LOC107660789,LOC107755045 coding downstream 36747 8929611 ~ 8936540 (-)
hirip3 hirip3,LOC107689078,LOC107552470,LOC107739380 coding downstream 45376 8921509 ~ 8927911 (-)
taok2a taok2,LOC108278428,LOC107590788,LOC107710882 coding downstream 138551 8811408 ~ 8834736 (-)
cdipt cdipt,LOC107710884,LOC107582865,LOC107678876,LOC107684638 coding downstream 164306 8805242 ~ 8808981 (-)
lat LOC108257259 coding upstream 39169 9022546 ~ 9032032 (-)
spns1 spns1,LOC107754623,LOC107567150,LOC107660866,LOC107552478,LOC107739389,LOC107689070 coding upstream 49467 9032844 ~ 9044136 (-)
nfatc2ip NA coding upstream 62268 9045645 ~ 9049091 (-)
sgf29 sgf29 coding upstream 66396 9049773 ~ 9056443 (-)
si:dkey-93n13.2 LOC108274046 coding upstream 120924 9104301 ~ 9120154 (-)
G208099 NA non-coding downstream 15076 8957261 ~ 8958211 (-)
G208098 asphd1 non-coding downstream 16890 8955866 ~ 8956397 (-)
G208097 NA non-coding downstream 17632 8955442 ~ 8955655 (-)
G208063 NA non-coding downstream 58728 8871976 ~ 8914559 (-)
G208062 NA non-coding downstream 99785 8860563 ~ 8873502 (-)
G208145 NA non-coding upstream 23623 9007000 ~ 9007259 (-)
G208151 NA non-coding upstream 41384 9024761 ~ 9024983 (-)
G208153 NA non-coding upstream 47148 9030525 ~ 9030978 (-)
G208158 nupr1,LOC108413333,LOC107660958,LOC107739393,LOC107567154,LOC100692788,LOC103393451 non-coding upstream 78203 9061580 ~ 9063507 (-)
G208189 NA non-coding upstream 119534 9102911 ~ 9103126 (-)
ndufa4l ndufa4l,LOC108260900,LOC108413413,LOC107684646,LOC107590798,LOC103026352,LOC107582867 other downstream 259969 8707954 ~ 8713318 (-)
selenow2a mien1,sepw2a,LOC107566883,LOC107755209 other downstream 683479 8279767 ~ 8289808 (-)
LOC113528661 NA other downstream 688695 8284474 ~ 8284592 (-)
slc4a1a LOC108279353 other downstream 705649 8249885 ~ 8267638 (-)
crhr1 crhr1,LOC108261365,LOC107662410,LOC108413653 other downstream 1267795 7559767 ~ 7705492 (-)
LOC113527952 LOC108260010,LOC108274064 other upstream 129589 9112966 ~ 9142871 (-)
dnal4a dnal4,LOC108261343,LOC108412416,LOC108436609,LOC106591471 other upstream 213119 9196496 ~ 9203640 (-)
prr15la LOC108273894,LOC108412372 other upstream 426427 9409804 ~ 9419584 (-)
copz2 copz2,LOC108260256,LOC108413159,LOC107740614,LOC107662379,LOC107710054,LOC107585036,LOC107687783,LOC105013247,LOC108246742,LOC106527321,LOC106912034 other upstream 480954 9464331 ~ 9474478 (-)
hoxb8a hoxb8a,LOC108278530,LOC108413053,LOC103044850,LOC107582957,LOC107662386,LOC107585089 other upstream 746474 9729851 ~ 9732566 (-)

Expression


Co-expression Network