dxo (dxo,LOC106601672,LOC106606733,LOC107666098,LOC107743041,LOC107691245,LOC107752708)


Basic Information

Item Value
gene id dxo
gene name dxo,LOC106601672,LOC106606733,LOC107666098,LOC107743041,LOC107691245,LOC107752708
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 10223395 ~ 10229399 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026916901.2
TTTCTAcgtttgtttcttttattttgaaagcgGATTGATGAAGCCTGAATTCACAAGTCAGGACGCTCCAAAATCAAAATAGCCAGCTAGTTATTTATTCGTTGCTCTGACCATGGCTTGTTTCCAAGACAGGTTTTAAACGCTAGAAACAATGTACCATGtacttttaatgttattttctaATATACAGTGAATGCATGTATACTGTGGTGAGGTGAGACTTTCCCCACCACTCttacgttagctagctagcatgttatGTTTTGGTTTCTAGCTTGCAAACCTGCTAGCTACACTGCATTACATAGAAGAGCTGGTTATCTGATACATGGCAGGTTTATGACTTGTGTCTGGTAATATTTAAAGAACCAGACAGCCTGGATAGTGGTCACTGAGCCGTGAGTTAGGCgggttattaataataaaccattttataataaatgttgtGTCTAGGCAGCAGTTATATGAGACATGGAGCGTCACGcaggaagcagcagcagcattagCAGCATTAGCAGCATTAGCACTCAGCGTCAGTctaaaagagacagagactttAATGAAGATCCGTCCACTCAGAAGCGGTTTCGAGCTGGTGGTGAGACGCAAGCCCCCCGCTCTCTGAGTACTCGAGCACAGCTGTATGAACGTGTCTTCCCTCAGTACAGACAGCCTGTGGAGGTCGGGGTCTTTTCTCTGGACTCAGACAGAGCCTTCTTTAACGACTCCAGACAGCTGCGTTACTACGTGGACCCGGGTAACAAACCCAGCTTCAACCTGCGGGATGGTTACAGAGACCGCTTCATTAAAAGAGATGACGGGGTCAAAGAGAGACTTGACCATATATTGCGGTGGATTATAGCAAACAGATCCAAactacactccacacacacttcttcatcCTCCTGTACACTAGGTGTAGACTTTGTCACTTGGCGAGGCCACTTAACGAAGCTGTTGACCACTCCGTATGAGACGCAGGAGGGATGGTTGCTGGCTGTGTCCAAGTTCAGAGGCACTCTCTACATGAGCGAAGTGGAGACAGAGGCTGCCCGAGTTAACCGAGAGAACCGTACAGAGAGGCATGAGGAGATGATGTACTGGGGCTACAAGTTTGAGCAGTACATCTGTGCAGATGATGTGAACGGTGTCCCAGACCGAGGAGGGGTTGTCAACACAAACGAGGCTTTCTGCACAGTAGTCCAGACTCGCCTAGCAGACCATAAGCTACTGTTCTCTGGTGAGGTGGACTGCCGAGATAAGGACCCTAGAGCTCCTCCAGCTCCGGCCTGCTACGTCGAGCTAAAGACCTCAGCTGAAATCTGCACCCCGAAACAGCGCAGTAACTTTCACAGATATAAGCTGCTGAAATGGTGGGCCCAGTCATTTCTTCCTGGAGTTCCACGTATCGTTGCTGGATTTCGAGACCATGATGGTGTAGtggtgtctgtagagacgttcCACATCTCAAAAATATCCCAACTGATTAAGAATGAGTACAACTGCTGGAAGCCGACAGTCTGTATGAACTTCTGTAGCGATTTCCTGTCCTTTGTGAAATCTGTTGTAAAAGAGGATAATCCAAGGGTGGTGTACCTGTTTGCATGGGACCCACATAGAGACGTGACCTACACAGTTCACAGAGACTCCCAGTATACGTTCCTTCCTGACTGGTATATCAAGGAAATGGCAagccatcatcaccaccatgtCTCTAACCCTAACATTTAACACGGTAGCCAATGAACCAAGATTATTTTCTTGTCTGAAGTTTTCTTCTTTAGTTTAGTACATATAGCTAACATATAAATGAAGCTTATAAGCACCAGTTTAGCACTGAAGCTCCAGTAcagaactaaagaagcaaacatacaccatacagccaaaagtatgtggatatcTGACCATCATACCTATATGTGCCCAATCCAAAAACAGCCTCCAATCTTATGgaaagactttccactagattttggagcgtggctgtggaaGTTTGTGCTTATTCAGCCTCTGATGTCAAGTAAGAAGGCCAAGGgtgcagttggcattccagttcatcccaaaggtgttcagggtATTTGAGGTCAGGGCCCTGTCTAgggttcttccacatcaaccttggcaaaccatgccttcatggaccttgctttgtgcacaggggtactgtcatgatgaaacaggtttgggcccttgctttccaatgaagggaaatcttaatgctacagcgtacTAAGACATTCTAGATAATTGTGTGCCTCTAACTTTGTTGCAgaagtttgaggaaggcccacatatgggtgtgatggtcaggtgaccacatacttttggtcatatagtgaaCCTGTAAAACTCATGCTTCCACACAGTACAATACAAtcatgttaatttaatttatgaatgatgatgacatagagaatcattttaaatcagttacacgtcagttaaaaaaatcagatcgTTACACCCCCATTCTTTAACTGGGTCTCTGTACACAATTAAGAGTCAAAGctgctttttgtcttttgtggATAAGCCtatttttaatcctgttttGCAGCCTGACTCATTTGGCTTTGCTACCAGAAAATGTGAGTTGTTCTACGCTatacttttaaatgtgtgtgattgtattcATTGTTGTTTGAGATTTCTTATAAGCTGTCAACAAATTCACATTAAATTGCAGTCAGTTTTGGAACCATACAAGAaaacaaagcaataaataaacactttcaaTGCTTGAAAAGCTTCA
>XM_034310094.1
TGCAAGGTATGAGGTAGAGGAAgtagagaccagctcagtgcaaatgACAAGGTGTACAAATATAGAAGTACACTAGGTGTAGACTTTGTCACTTGGCGAGGCCACTTAACGAAGCTGTTGACCACTCCGTATGAGACGCAGGAGGGATGGTTGCTGGCTGTGTCCAAGTTCAGAGGCACTCTCTACATGAGCGAAGTGGAGACAGAGGCTGCCCGAGTTAACCGAGAGAACCGTACAGAGAGGCATGAGGAGATGATGTACTGGGGCTACAAGTTTGAGCAGTACATCTGTGCAGATGATGTGAACGGTGTCCCAGACCGAGGAGGGGTTGTCAACACAAACGAGGCTTTCTGCACAGTAGTCCAGACTCGCCTAGCAGACCATAAGCTACTGTTCTCTGGTGAGGTGGACTGCCGAGATAAGGACCCTAGAGCTCCTCCAGCTCCGGCCTGCTACGTCGAGCTAAAGACCTCAGCTGAAATCTGCACCCCGAAACAGCGCAGTAACTTTCACAGATATAAGCTGCTGAAATGGTGGGCCCAGTCATTTCTTCCTGGAGTTCCACGTATCGTTGCTGGATTTCGAGACCATGATGGTGTAGtggtgtctgtagagacgttcCACATCTCAAAAATATCCCAACTGATTAAGAATGAGTACAACTGCTGGAAGCCGACAGTCTGTATGAACTTCTGTAGCGATTTCCTGTCCTTTGTGAAATCTGTTGTAAAAGAGGATAATCCAAGGGTGGTGTACCTGTTTGCATGGGACCCACATAGAGACGTGACCTACACAGTTCACAGAGACTCCCAGTATACGTTCCTTCCTGACTGGTATATCAAGGAAATGGCAagccatcatcaccaccatgtCTCTAACCCTAACATTTAACACGGTAGCCAATGAACCAAGATTATTTTCTTGTCTGAAGTTTTCTTCTTTAGTTTAGTACATATAGCTAACATATAAATGAAGCTTATAAGCACCAGTTTAGCACTGAAGCTCCAGTAcagaactaaagaagcaaacatacaccatacagccaaaagtatgtggatatcTGACCATCATACCTATATGTGCCCAATCCAAAAACAGCCTCCAATCTTATGgaaagactttccactagattttggagcgtggctgtggaaGTTTGTGCTTATTCAGCCTCTGATGTCAAGTAAGAAGGCCAAGGgtgcagttggcattccagttcatcccaaaggtgttcagggtATTTGAGGTCAGGGCCCTGTCTAgggttcttccacatcaaccttggcaaaccatgccttcatggaccttgctttgtgcacaggggtactgtcatgatgaaacaggtttgggcccttgctttccaatgaagggaaatcttaatgctacagcgtacTAAGACATTCTAGATAATTGTGTGCCTCTAACTTTGTTGCAgaagtttgaggaaggcccacatatgggtgtgatggtcaggtgaccacatacttttggtcatatagtgaaCCTGTAAAACTCATGCTTCCACACAGTACAATACAAtcatgttaatttaatttatgaatgatgatgacatagagaatcattttaaatcagttacacgtcagttaaaaaaatcagatcgTTACACCCCCATTCTTTAACTGGGTCTCTGTACACAATTAAGAGTCAAAGctgctttttgtcttttgtggATAAGCCtatttttaatcctgttttGCAGCCTGACTCATTTGGCTTTGCTACCAGAAAATGTGAGTTGTTCTACGCTatacttttaaatgtgtgtgattgtattcATTGTTGTTTGAGATTTCTTATAAGCTGTCAACAAATTCACATTAAATTGCAGTCAGTTTTGGAACCATACAAGAaaacaaagcaataaataaacactttcaaTGCTTGAAAAGCTTCA

Function

symbol description
dxo Predicted to enable several functions, including bis(5'-nucleosyl)-tetraphosphatase activity; metal ion binding activity; and nucleotide binding activity. Predicted to be located in nucleus. Orthologous to human DXO (decapping exoribonuclease).

NR:

description
PREDICTED: decapping and exoribonuclease protein

GO: NA

KEGG:

id description
K14845 RAI1, DOM3Z; RAT1-interacting protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026916901.2 True 2752 mRNA 0.44 6 10223395 10228814
XM_034310094.1 False 1912 mRNA 0.43 6 10223395 10229399

Neighbor

gene id symbol gene type direction distance location
anks4b anks4b coding downstream 9984 10209348 ~ 10213411 (-)
si:ch211-256e16.3 si:ch211-256e16.3,LOC108260968,LOC108412900,LOC107717492,LOC107552129,LOC107674048,LOC106601741 coding downstream 16181 10197508 ~ 10207214 (-)
mosmoa c17h16orf52,c16orf52.L,C20H16orf52,LOC108258941,LOC106518731,LOC102224510,LOC105910214 coding downstream 38294 10146848 ~ 10185101 (-)
nags nags coding downstream 89372 10122386 ~ 10134023 (-)
col1a1a col1a1,LOC108279263,LOC107585052,LOC107740634 coding downstream 161474 10042181 ~ 10061921 (-)
pitpnc1a LOC108274028,LOC108412868,LOC107691236,LOC107665814,LOC107752702,LOC106903613,LOC107743029 coding upstream 1237 10230636 ~ 10296123 (-)
cacng1b cacng1,cacng1b,LOC108412846,LOC107666105,LOC107724731,LOC107691235 coding upstream 115866 10345265 ~ 10355473 (-)
cacng4b cacng4b,LOC108259704,LOC107691234,LOC107565862,LOC108412836,LOC107713946,LOC107548710 coding upstream 130787 10360186 ~ 10373055 (-)
aimp2 aimp2,LOC106601790 coding upstream 151794 10381193 ~ 10384307 (-)
trnac-gca_22 NA coding upstream 155650 10385049 ~ 10385120 (-)
G208758 NA non-coding downstream 36143 10187036 ~ 10187252 (-)
G208649 NA non-coding downstream 157039 10063977 ~ 10066356 (-)
LOC117599011 NA non-coding downstream 295453 9829627 ~ 9927942 (-)
G208951 NA non-coding upstream 112512 10341911 ~ 10342222 (-)
G208964 lmtk2 non-coding upstream 218337 10447736 ~ 10450540 (-)
G208980 NA non-coding upstream 288943 10518342 ~ 10518947 (-)
G208998 NA non-coding upstream 404136 10633535 ~ 10634150 (-)
G209189 NA non-coding upstream 859614 11089013 ~ 11144984 (-)
hoxb8a hoxb8a,LOC108278530,LOC108413053,LOC103044850,LOC107582957,LOC107662386,LOC107585089 other downstream 490829 9729851 ~ 9732566 (-)
copz2 copz2,LOC108260256,LOC108413159,LOC107740614,LOC107662379,LOC107710054,LOC107585036,LOC107687783,LOC105013247,LOC108246742,LOC106527321,LOC106912034 other downstream 748917 9464331 ~ 9474478 (-)
prr15la LOC108273894,LOC108412372 other downstream 803811 9409804 ~ 9419584 (-)
dnal4a dnal4,LOC108261343,LOC108412416,LOC108436609,LOC106591471 other downstream 1019755 9196496 ~ 9203640 (-)
LOC113527952 LOC108260010,LOC108274064 other downstream 1080524 9112966 ~ 9142871 (-)
tecpr1b LOC108276900 other upstream 221325 10450724 ~ 10470518 (-)
hmox1a hmox1,LOC108432221 other upstream 1412758 11642157 ~ 11647997 (-)
zgc:162612 foxd1,LOC108278341,LOC107757501 other upstream 1470450 11699849 ~ 11701172 (-)
LOC113528332 hs3st6,LOC102795972 other upstream 2068377 12297776 ~ 12315498 (-)
msrb1a msrb1 other upstream 2104455 12333854 ~ 12339269 (-)

Expression


Co-expression Network