LOC113528384 (slc25a17,LOC108412891,LOC106601749,LOC107666095,LOC107743042,LOC107548713)


Basic Information

Item Value
gene id LOC113528384
gene name slc25a17,LOC108412891,LOC106601749,LOC107666095,LOC107743042,LOC107548713
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 10215045 ~ 10222874 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026916903.2
AGGGCGCAGAAGAGCACCGACACTGCGAGTCACTCCCACGAACAACTATGCGGAAGTGCTCTGAAAGTGCTCTGAAAGTGCTCAGTATCGTATTTTGACCATTGTTTCGCGCATGATTATGGTTTGAGGAGCTGGGTTGCGGTGTGAAGTTTATCGTCCCATGCTCCATCCACTTTAAACAGCTATCATTAAGAGTAGAGAAGCAGACATGGCTTCCAATGGCGCCTCTGCGGACGGGCTTCTGTCCTATGAAACACTTGTGCACGCTGTAGCCGGTGCAATGGGCAGTGTGACAGCAATGACGGTGTTCTTCCCTCTGGACACAGCCAGAGTTCGACTGCAGGTGGACGAGAGCCGAAAGTCCAAAGCCACTCCTGCCATTCTGGCTGAGATTGCAAAAGAGGAGGGCGTAATGTCTCTATACCGTGGTTGGTTTCCTGTAATCTCCAGTCTGTGCTGTTCCAACTTCGTCTACTTCTACACATTCAACTCACTGAAGCGGCTGATGGTCCTGGAAGAAGGGCAGTCCAGGCCTGGCAGAGACCTTATCATGGGCTTCATCGCAGGGACTGTGAATGTGCTCCTGACTACACCCATGTGGGTGGTGAACACTCGGCTGAAGCTCCAGGGAGCAAAATTTCGGAATGAAGATCTCCACCAGACCCACTACAAGGGCATTTTTGACACTTTCTCTCAGATCATAGCTGATGAGGGGGTAGGAGCGCTGTGGAACGGCACGCTCCCGTCCCTGCTGCTGGTGTTCAACCCTGCAGTGCAGTTCATGTTCTATGAGGCCATGAAGAGGAGGGCAGGGCAAGGTGGACGGAAGATTTCATCACTTGAGATCTTTGTCATCGGTGCCATCGCCAAGGCTATTGCAACCACGGCCACTTATCCACTGCAGACCATCCAGGCCATTCTGAGGTTTGGCCAACACAAATCACAAGCGAAAGGAGGTGTACTGGGCAGCATGCGCAATGTGGTGAATTTACTAATGGACAGAATCAAGCGCAGTGGAGTTCTCGGCCTGTACAAAGGTCTGGAGGCGAAGCTTCTTCAGACGGTGCTGACAGCAGCTCTCATGTTCATGGTTTATGAGAAGATCACTGCAGTCACCTTCAAACTGATGGGCAGCAATAAGAAGCTGAAGCATTAACAACAGTTAAAACTAACCAGTGTCAGCCTGCTTCCTTTACTACCTCTCTAAACTCTATGGCAGATCTTAACCATCATCCCTTTTAGTGTAGGGGCTCAATAATTACAAAGATCAACTCAAATGCCTTTTAATTTTGATACTTTGTCTCTAAAAAATGTTCTGGTCACATTCACTGTCAGATTTTAGAAATGATGTAAAAAGCCTATTtggagagagttttttttttaattagaattcTTAATTCTGTACAGGAAACACTGTATGATGTACAGTACAATGTACAGAAACTTTAATTTATCTTGCTATAATTGCAAAGAAATGtcttactttatttaattttttaatcagtcAGCTATGAATTTCTTCTTTACAGCAATTCTTTCTTTCAAACACACGATGGCCTGTTTTGCTAGCTGTATGTGGAAAACATCATGACTGTGCATTACTGTAGTTAGTGAGTCAGTTTAGTGAGTCACGTGTCCGTGAGCATTCAGTTCGCACTCAAATGTGAGAGGTTACATCTCTGTCCTGTGAGATGAACAGTTGTTATTAACCGCACTGATTAATGAATTGTAGGTGTTTACGTGCTTGAACATGTAAAACtattagtggttttttttttttttttttgcaagagaACAAAATACTTTCAGCTACACATTTAGTCTTTTTGTCCATCAGCACATTAATGGggtaaaaggagaaaaaggCAGCTTATAAAGAATGCaaattattgttaaaaattTATGCCAAAACTATATGCAAATTTTAAACTAAAGTAATATGCCTATCCTTAAGGTAaattttattagaattatttagtACATAATCGGTCTAAGTGTACTTCATGAATTCCAGTGGTCAGTGTAACAGAATAAGAACTACCTCTGACTCTAGCTCTGATTATTTATGAACCTCTAACTtgtacaatgattttttttttaatcattaagaaACTAATATAAGCATGTTGTCTGTGCACAGAGATTAAAGATATTTGGTAATATTCAGCTGAAA

Function

symbol description
slc25a17 Predicted to enable nucleotide transmembrane transporter activity. Predicted to act upstream of or within transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of peroxisomal membrane. Is expressed in gut; head; and swim bladder. Orthologous to human SLC25A17 (solute carrier family 25 member 17).

GO:

id name namespace
GO:0006810 transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K13354 SLC25A17, PMP34; solute carrier family 25 (peroxisomal adenine nucleotide transporter), member 17

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026916903.2 True 2173 mRNA 0.42 9 10215045 10222874

Neighbor

gene id symbol gene type direction distance location
LOC113528352 snu13,snu13b,LOC103040872,LOC101154660,LOC105910236 coding upstream 19839 10192804 ~ 10195206 (+)
casc3 casc3 coding upstream 288842 9917962 ~ 9926203 (+)
msl1a msl1 coding upstream 297944 9912768 ~ 9917101 (+)
si:dkey-225f5.4 LOC108258433 coding upstream 321549 9886784 ~ 9893496 (+)
igf2bp1 igf2bp1,LOC108412303,LOC107717213,LOC107667758,LOC107582884,LOC106607494 coding upstream 335160 9840890 ~ 9879885 (+)
helz helz,LOC107691233,LOC107665819 coding downstream 76013 10298887 ~ 10341715 (+)
lmtk2 lmtk2 coding downstream 203185 10426059 ~ 10448685 (+)
bri3 bri3 coding downstream 252480 10475354 ~ 10484206 (+)
fam20ca LOC108274115,LOC108412745,LOC107713951,LOC107584184 coding downstream 525272 10748146 ~ 10798178 (+)
LOC113528286 rai1 coding downstream 586580 10809454 ~ 10846584 (+)
G208488 col1a1a,LOC108279263,LOC107585052,LOC107740634 non-coding upstream 153080 10039409 ~ 10061965 (+)
G208504 NA non-coding upstream 331918 9864977 ~ 9883127 (+)
G208507 NA non-coding upstream 356163 9846084 ~ 9858882 (+)
G208472 NA non-coding upstream 467035 9746285 ~ 9748010 (+)
G208415 hoxb9,hoxb9a,LOC107662432,LOC107585091 non-coding upstream 476179 9737009 ~ 9738866 (+)
G208701 dxo,LOC107752708,LOC107666098,LOC107691245,LOC107743041 non-coding downstream 2709 10225583 ~ 10226503 (+)
G208783 NA non-coding downstream 119034 10341908 ~ 10342224 (+)
G208911 NA non-coding downstream 604151 10827025 ~ 10828913 (+)
G208916 NA non-coding downstream 632281 10855155 ~ 10857015 (+)
G209067 NA non-coding downstream 709185 10932059 ~ 10932428 (+)
rapgefl1 rapgefl1,LOC107717207,LOC107662398,LOC107740631,LOC107667751,LOC107585050,LOC106600822 other upstream 227272 9944306 ~ 9987773 (+)
nupr1b nupr1,LOC108413333,LOC107660958,LOC107739393,LOC107567154,LOC100692788,LOC103393451 other upstream 1151632 9061563 ~ 9063413 (+)
asphd1 asphd1,LOC107568490,LOC107755186,LOC107552472,LOC107739384 other upstream 1256945 8950466 ~ 8958100 (+)
trnas-cga_1 NA other upstream 2206634 8008186 ~ 8008411 (+)
G207480 LOC107834952 other upstream 2361536 7853191 ~ 7853509 (+)
G208781 cacng4b,LOC108259704,LOC106606650,LOC107565862,LOC107691234,LOC106601773,LOC107724746,LOC107713946 other downstream 126528 10349402 ~ 10781459 (+)
cdc42ep4a LOC108256079,LOC108432235,LOC103033379 other downstream 1057206 11280080 ~ 11388020 (+)
luc7l3 luc7l3,LOC107674472,LOC107726809,LOC107654661 other downstream 1344245 11567119 ~ 11577823 (+)
tbc1d16 tbc1d16,LOC107559246,LOC107689993,LOC107670685,LOC107562324 other downstream 1826533 12049407 ~ 12086058 (+)
LOC113528416 LOC108275780 other downstream 1912395 12135269 ~ 12140371 (+)

Expression


Co-expression Network