LOC113528386 (LOC108274059,LOC105908958,LOC108437141)


Basic Information

Item Value
gene id LOC113528386
gene name LOC108274059,LOC105908958,LOC108437141
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 14692193 ~ 14709079 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026916905.2
TGACGTTTCAACCTGTTacatttcagccaatcagaggagaCGTCGCTCTTGAAGTCCAAATTCAAAAGTGATAGCTGCTGCCGTTAGCTGACTATTTTGCTAGCCTGGTTTTCAACACTGTGACGGAACTTCTAAACTAACCTTCTTTGTTTTTCGAAACATGGAGCCAATGAaggaagatttaaaaatgtacttttacgAGAACAGAATCGCTACTTATTCAGGGTGGCCGTTTGATGAGGACTGCGCGTGCACGTCGGAAAATATGGCCAAAGCTGGTTTTATCCACACACCCACTGACAACAGTCCGGATGTGGCCCAGTGCTTCTTCTGCTATAAAGAGCTGGAGGGCTGGGAGCCTGAGGATGATCCTCTCAAGGAACACAAGTCTCACTCTCCAACTTGCAATTTCATTCTGCTGAAAAAGGCAGTGGAGGAGCTCACAGTGGAGGAGATTCTGAAGCTgcagaaagagaggcagaagtTCCACATTAAAATGGCCTGCAAACAAGTAATTGAGAAGTTTGAGGAAGCAGCAAAATCAAGAAGAGGCGACATTATCAAACTAGCCATGGAAGGCTAAATGGCGTTTGTCTTTTCCTTGTATGCTTGGAAAGGACGTGGTCCAAAGCTGCGCTACCATCCTTGTATATACTGAATGGCATTATTCTTTAACCTCTTTAATGCAGTTTTATATCAACTTCTCATGATCACACAGGTAGATTCATAGAACCTGGCTGATTTCCTTCTCTATATTCGTGATGTTGCATGGATAATACAGCTAGATGCTGTAACTGGAATTGAGCAATCCCTTAAATTCCCTTAAGTTTAAAAGTGTTGTCTATTAATAGTCTATACAACTCCATGTTGCATGTTTTCCAGGTCTGTAATGAATACTGCTACATGACTTGTCATATTGTTCTGTTGTACCAATTCTCCAAGATGTAATCTGATTTTTACGAGAGTGTCTTTCAAAAGTTTTACGATTGTCATATGGTAGCACTTCAGTACATTTGCACTActtatttgtttagttttttttctgtgattgcAGTATTGTTGTCAA

Function

GO: NA

KEGG:

id description
K08731 BIRC5; baculoviral IAP repeat-containing protein 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026916905.2 True 1066 mRNA 0.41 4 14692193 14709079

Neighbor

gene id symbol gene type direction distance location
LOC117599009 NA coding downstream 201418 14487821 ~ 14490775 (-)
LOC113528481 zgc:112320,LOC108275843,LOC101168622 coding downstream 226902 14463405 ~ 14465291 (-)
si:dkey-282h22.5 LOC108261121 coding downstream 240598 14447240 ~ 14451595 (-)
LOC113528545 LOC108255936,LOC103153053 coding downstream 259473 14414913 ~ 14432720 (-)
LOC113527937 LOC108255917 coding downstream 281516 14394229 ~ 14410677 (-)
fscn2a LOC108274411,LOC108437142 coding upstream 23824 14732903 ~ 14738583 (-)
LOC113528036 LOC108255868 coding upstream 59528 14768607 ~ 14840369 (-)
LOC113527964 LOC108260935 coding upstream 166256 14875335 ~ 14878123 (-)
otop2 otop2 coding upstream 191754 14900833 ~ 14909395 (-)
amn amn coding upstream 222837 14931916 ~ 14934161 (-)
G211195 socs3 non-coding downstream 70411 14619232 ~ 14621782 (-)
G211187 NA non-coding downstream 97529 14588820 ~ 14594664 (-)
G211054 LOC108275544 non-coding downstream 229784 14461792 ~ 14462409 (-)
G211003 NA non-coding downstream 362273 14329586 ~ 14329920 (-)
G210997 mgat5b,LOC108274344,LOC108435872 non-coding downstream 393995 14294307 ~ 14298198 (-)
G211269 NA non-coding upstream 118156 14827235 ~ 14844312 (-)
G211274 NA non-coding upstream 138173 14847252 ~ 14847456 (-)
G211346 NA non-coding upstream 225590 14934669 ~ 14935121 (-)
G211349 NA non-coding upstream 291866 15000945 ~ 15001328 (-)
G211363 NA non-coding upstream 326090 15035169 ~ 15036895 (-)
LOC113528445 LOC108274755 other downstream 2061 14678750 ~ 14690132 (-)
G211151 usp36 other downstream 171218 14520277 ~ 14520975 (-)
pecam1 LOC108279165 other downstream 662552 14017615 ~ 14029641 (-)
LOC113528401 ppp1r27a,LOC108279187,LOC107748880,LOC107558871,LOC107654574,LOC107665625,LOC107548727,LOC107743019 other downstream 685681 14004169 ~ 14006512 (-)
mcrip1 mcrip1,fam195b,LOC107654575 other downstream 691156 13993876 ~ 14001037 (-)
rac1b rac3,rac1,RAC1,LOC106606208,LOC102788082,LOC107388169,LOC105898786,LOC108437155,LOC106601744,LOC105026138 other upstream 269540 14978619 ~ 14986112 (-)
LOC113528178 LOC108260277,LOC108437874,LOC105905285,LOC100698953,LOC104918338,LOC103373486,LOC106518679,LOC108241369,LOC107083184,LOC103393004 other upstream 1441996 16151075 ~ 16203991 (-)
LOC113528039 LOC108276772 other upstream 1863466 16572545 ~ 16598688 (-)
LOC113527915 LOC108431896,LOC108275040,LOC107695676,LOC107553625,LOC107601566,LOC101883507,LOC103358698 other upstream 2052153 16761232 ~ 16765341 (-)
LOC113528519 NA other upstream 2583694 17292773 ~ 17319719 (-)

Expression


Co-expression Network