zgc:171844 (LOC108260146,LOC108432048,LOC100703987,LOC106607059)


Basic Information

Item Value
gene id zgc:171844
gene name LOC108260146,LOC108432048,LOC100703987,LOC106607059
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 12562950 ~ 12583366 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026916918.2
tgtctctaacacacactcacattcatgCAAGCGAGTGTGATGCGCGTAATCACAGTGATAAGTTGATTTGAATGCCAGTGATCTGGGCACGCTGCAGGTCTGCAGAACGCTGCTGAAGTCGTGCTTTAGGCGGAAGCGCTCTGGCAGAATGCAGAAAGAGCGCAGATGTGGGAAGCTGTACGGCTCTGTGGAGCGAGTGGAGCTGGGAGAGGACGCGCACAGAACAGATGAAGACGGCATTGTGTCCATGGCGGATTCCACCATCACTGTGGATGACATTGAGGGCGAGCTGTTCAAAATCGAGAGGATACGAGATGTGCTGGTGCGGAGAGAGTCTGAGCTGAGATACATGATGGATGATATTCAGCTATGTAAAGAGATCACAAGGCTTAAAAAAGAACTGCAGAAATTGGTGTCGATCCCAGATAAAGACAAGTCGAGTGAAGACCGGCAGCGTGAGGAGGAGCTGTTGCAGCAGATCCATAAGCTGGTGGAGACTCGGGACTTTCTAGTGGATGATGTGGAGTTTGAGAGACTGAGGGAGCAAGAGGAGGACAAAGAGATGGCCGAATTCTTACGGGCAAAATTTCCTGCAAGCACTACCAAGAAAAGTTCCACTCAGAAGAGAAGAATGACCTCTAGGGCCCATGTCTCCTCTCCAAAAGTGACCAAGGCTGGCCTCACCCTGCTTAAAGAATGCTGTGGTTTTACCTGTTCTGTCATGTAGAATAAGAAATGATGAGAGTGTCTACAAGAGTGAAAGAAGAAGTGAGATTAAAAAGTCCAACAAAAGTACAGAAGGAGAAGAATATACGTGTAGGCAAGAGGCTTTTTACACAACAGTATATTTTATGAGGTACTGAGGACTAGTCTCATTATTGATGTGCAAATtgtggaaattattttttaaatcaacaatGGGATAAACATTATGCAATGTGATGCAAGTgaatttattgtaattatacagtagtgtgtgtctgtaaattTAAACCCGGTAATCAGTAGTTTAAATTAACAGTATTTTCCCTTATTGTCCGTccttgtgaaaataaaaaaaggcagCTGCCTGATTTGCATCAGCTACTAACTTCACTATATTATGTTTGTCAGTGCAAGCGTGGTGTCCTTGCGATGTTCTGCCACTGAATACAGCTCTATTTCAACTTAGATTGAACCACTGACATGTCCTTGtgcctgagaaagagagagagagagagagagagagagagagagagagtgagcctGAGAGAGGGGGAGTATGAGGATGAGTAACAAGAAAGAGATTACATTACAAACTAACCAAGTAGAATCAAAAGAATTGGATGCATGGACTATAACTGAGGAGATCTAAGCAGAATCAGGAATGGCAGTTAAAAGGGATTTGAATGTATTTGTGCGCTGTTATGTGCAATGTGACTGAAATTGAACTTGAATGCTTCAAAGTTTTTCTGATCTGAAGCATCACTATGCTAAAAACTGGAGGTCAGGTAACACGTGATGAAAAACTGATTAGTTGTTTATGATTCATTCTAATAGGCTGCACAATccatattttgaataaaatattctgtatagacataaaaaaaaaaacatgctgaattaaatatattaaacctCTGCTTTGTCAGCGGCTGTGTAGTTACACATATTTTCCAGGCTTTTTTAAGTGTACTGTTCTCTCTTTCAGCTGCAACATCTTTAACTGTGTTAATGTGAAGAGAGCAACTAGTGTTTGGTTTGTATCAAGAGAAGATTTGCCTGACTTTACCTCAGCAGTTTGTAAAGTTTGATGTTTTTGGTGGTCatgtttcacaaaataaaatttttcattaaagaaaatgaacatt

Function

NR:

description
uncharacterized protein C16orf45 homolog isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026916918.2 True 1850 mRNA 0.41 6 12562950 12583366

Neighbor

gene id symbol gene type direction distance location
ankrd40 ankrd40 coding downstream 19888 12537412 ~ 12543062 (-)
wfikkn2a wfikkn2,LOC103032076,LOC107690026,LOC107758109,LOC107555656,LOC107670669,LOC107583670 coding downstream 32649 12526340 ~ 12530301 (-)
LOC113528448 tmem159 coding downstream 168372 12389706 ~ 12394578 (-)
si:ch211-139g16.8 NA coding downstream 181916 12375893 ~ 12381034 (-)
rps2 rps2,LOC107690003,LOC107758112 coding downstream 188685 12371533 ~ 12374265 (-)
mfsd6l mfsd6l coding upstream 4309 12587675 ~ 12591505 (-)
pik3r6b LOC108260485 coding upstream 10211 12593577 ~ 12612926 (-)
trnas-aga_12 NA coding upstream 243092 12826458 ~ 12826539 (-)
ilf3b ilf3,LOC106601349 coding upstream 463953 13047319 ~ 13063983 (-)
gcdhb gcdh,LOC107718595,LOC107653471,LOC107563244 coding upstream 512893 13096259 ~ 13104838 (-)
LOC117598772 NA non-coding downstream 99072 12446461 ~ 12463878 (-)
G209984 NA non-coding downstream 229288 12333454 ~ 12333662 (-)
G209961 NA non-coding downstream 325758 12236974 ~ 12237192 (-)
G209951 NA non-coding downstream 388543 12173454 ~ 12174407 (-)
G209946 NA non-coding downstream 403838 12158070 ~ 12159112 (-)
G210123 NA non-coding upstream 3065 12586431 ~ 12587089 (-)
G210351 kpna2,LOC108261381,LOC100304957,LOC108432045 non-coding upstream 284224 12867590 ~ 12868480 (-)
G210349 kpna2,LOC108261381,LOC108432045,LOC106607066 non-coding upstream 285886 12869252 ~ 12870186 (-)
G210350 NA non-coding upstream 338571 12921937 ~ 12923464 (-)
G210348 LOC108257112 non-coding upstream 343279 12926645 ~ 12928808 (-)
tom1 LOC108260160 other downstream 3737 12546333 ~ 12559213 (-)
msrb1a msrb1 other downstream 223681 12333854 ~ 12339269 (-)
LOC113528332 hs3st6,LOC102795972 other downstream 247452 12297776 ~ 12315498 (-)
zgc:162612 foxd1,LOC108278341,LOC107757501 other downstream 861778 11699849 ~ 11701172 (-)
hmox1a hmox1,LOC108432221 other downstream 914953 11642157 ~ 11647997 (-)
elof1 elof1,LOC103393660,LOC100703874,LOC106589640,LOC103384163 other upstream 807250 13390616 ~ 13395457 (-)
LOC117598755 NA other upstream 812100 13395466 ~ 13399225 (-)
xylt2 xylt2,LOC107748866,LOC107665700,LOC107654585 other upstream 1257800 13841166 ~ 13871131 (-)
mcrip1 mcrip1,fam195b,LOC107654575 other upstream 1410510 13993876 ~ 14001037 (-)
LOC113528401 ppp1r27a,LOC108279187,LOC107748880,LOC107558871,LOC107654574,LOC107665625,LOC107548727,LOC107743019 other upstream 1420803 14004169 ~ 14006512 (-)

Expression


Co-expression Network