nfil3-2 (nfil3)


Basic Information

Item Value
gene id nfil3-2
gene name nfil3
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 13210369 ~ 13220022 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026916922.2
TCTCTCTGCTGCTGCAACATGGTTCGAGgatgggcagagagagagagagagagagagagagagagagagagaatgttatGCAACTAGTTATGCAACTGTGACCTACTAACATATATTTCCAGCACAGCGAGGGAGGGAGGACATTGGAGCGCCTCAACAACACAACACGAGGAACCAAAATACGAGTCACACTGAACGCGTGCCCGCATACGAGCAGAGCGCTGAACGGGAATCGTGACACTTTGCATGTCTTATCAGTTTCTGCCTATACCATACCGGCTATAGAGCGAGCAGCGGCTGTGTTGTGCCCATTAATTTGGATACGCGTGTACAACACCAACGCCTTCTAACACATAGCCATCTGGAGGCACAGATAGAGGTTGCACCCCTCCCCGCTGTCTGACAAGCTGAGACAGACTGAGTGACCTACATCCTGCAATACGCCTTGAGCACTGGAGTCTGTCTCTGCCAGCTTATTAACATAGCCTTGTTGAAAAgcgagaaaaaaaatgaaaacaagcaaaaagaACAGGTCATAGTGGCCCTAAGCTAATAGTTTCACATTCTTGAGACTTCAAgaatttttctcctttttctgccCAGTTTGTCCCATTGGCTGTTGGAGTGGCTGGTTTGGGAGTTCACTGGATGATTAACATTAGTTAAATGCAGGAAACTGTCACAGAGGCTCACTTATTCTTGATCTTTTTAGCCAATCTGGACACTTAACAaagattattgattattattattattgttatttaggAACTTCAGCAAAATCAATGAGGTTGACCCCAACTGCAGCTAAAATACCTTATACGATTTTTGCCGATCCAGCTACTTAGTACAACATTCAAGACTACTAAAAAGAGGGAGACcttacagccatttttataaCCACCTTTCCCCTCTACCCTATCCCTTATATTCCCATCAGTAAGCATTTCTGATGGTGGCAAGAAGATTCCAAACTGGATTCCTCTAAAGAATAATGGAAAGCCCACAAAGCCCAGCAAATTCCAGTGTAGGCAAAACCATAGAGAATAAAGAAACTTTCTCAGGCTATAACAACACTCTTCCTTCACCTAAGGGCAACCCTCGTTCTGTCCGCCTTTTAAAAGCCAAGCCAAACATGACCTGCCGGCGCAAGCGTGAGTTTATCTCTGATGAGAAGAAAGATGCCTCCTACTGGGAGAAACGCCGCAAGAACAACGAAGCAGCTAAGCGTTCCCGGGAAAAACGGAGACTCAATGACATGGTTTTGGAGAATAGAGTTATTGCACTGAATGATGAGAATGTACGTCTAAAAACAGAACTCCTGCAGCTGAAACTCAGATTTGGCCTCATCAGTGCAGCCTCCTACATGGAGAAGAGCCAGCAAATTGGAGGAACAATGAATGGAACTTCTGCatgctcttcctcttcttccagTCATTTCTACCCTAATGGCTACTCTAGTGGCTCCCAAGTGATGAACTCTGACTCCTCAGAGGCTGAGCAGTCTGTCCGGGGTGAGGGACTTGCCCAGTTAGTTAAGTACTCTCCTCGAGGTTCTCTCTCAGATATGTCTGATGGTTCTTCCCGTGACAGTCCAGAGCCAATGAACTATGATATCAAGCAGGAAGGGCCAGGGATAGATATGGACATTGCAAACAGCACGACCACACCAATTATGTTTAATATCCGTCGTGAGTTgtccacatcacatcaccaacATACCTTTCAATCAGGATATCACAGCCACCAACAACAGCATCATCACCAAGAGACTGTAGTCAGTGCTGCTGCACCTCCAGTGCAGACTGCTCAAAGAAGTGTCATCCTGTATCGCTCTAGCAGTGTCTCGTATCCTGTAGAGCGTTCAAGACCTCAGGAAATCACTCAACAGAAACTGCCACAGATCCTACTCCAACCTACAGAGGGATCTACCAAAGGCACTGAAAGCCTGTCAGAGGCAACCAGTCAGCATGAAAGTAAGACTTTAGACACTCTGCCTTATGAATACTCCGATGGAGAAGCAGCAATGAAACAAGCATACAGGGCCCAACATCAGCAGCTTGTGGCTAGTTGTCAGAAGGCTGAGACTATGGCACCAGACCTTTGCAGACAAGGGGGTGAAGAGCTGTACCACTATGACAGCCCACAGGATGAGGAGCCTCCAGTACTGAGTTATGAAGGAGGTCCCAGGAAAGAAGGGTACTATCAGGGTCACTCAGGAAAGGACACCTCCTTAAGTGATGGTGATCCCCGCAGTTCTGACAAAGATGCATCCACTGATGATGAGTGCCCATCTTCTTTTTGTTCTGAAACTGGCAGTTATCACCAGCAATCCCCTTTGGCTGGAGGGCCAAATTCCTCCCCACAAAGCCAAAGTAGAGACAGTCAAGCAGAGGTCAAAGGTACAGCACTACCGCACAAACTACGCCTTAAGCACAGATCTCTGAGTAATGCTGGATCAGCAACTCAAGAATCACCAACTACACCACCAGCACATGTGCATCCATTACCTCAGCACCCTTACCTGGCTTTGCCTCAGTCCAACCAGCAACTTCAGGTTGGTTGAGAAAGGGTGAGCCAGGGGTTAAGGGCCAGCCAACCCCAGAGTTCTGCAAGCAGGCCACTTCGACAGAGGAAAGAAGGACAGATTATGGAAAGAACATCCTGATGTATGCAATAGCATGAATAAGAGGCATGACTAAGAGTGAGGGACACTACGGGACCCACTGTGGTAGTATGCAAACAGACATATCCTTTAGCCTCTTCCCACCTGGCATTGGTGTGCATTGGGAGCAGAGACATAGATATAGAAATGTCAGTCCCAAAAGCAGACAGAACTTCTGGGTAAactgtattatactgtaaaGACTGCTTTGTTTCTGTATCTCATCCCATAATTACAAAAGCACTTGTGCAGCAAATGAGTGGCGTGAACGAACTGTTCACATTTTTCCCAATCACAATTTGTTATAACATGATGTCAAGGTAACAGCAAGCATGGCAATAGCAACCATTTGTGAGGCATTCTAATCTACTCACTAACTGTACCTACTGGTTTGTGTCCATTTTTATACCAAATCAGAGGCTAGCTGTTCAACACAAAACATATCAAAACATCTGAGCATTCTGGGATTATTCCCTTGACCAAAGAAAGACAATAGCTTTACATTTCATACCTCtgtcatacatttttttcattttccatatTCACAGTCCCAGACACTTTCTCTTGTCCAAGCACTTGGTTTGTATATTACtgtgatataattattatatataaatatatattttaagaataaaatcaagtttttttggaaaaaaagaaaaaattacaaGGGCAAAAAGGATTTAGATGACTCACTAATTTGTcaaaaatactgtatagtatCATTGTGTTTACTGTTCAGGTGTCATTTAAGTACCTTTTTTGattgtttaattgttattttaaaagttCTCATTGTTTTCAGCAACTTACCTTTTTAAAGTAATCAAAATGCCccaaattgttaaaaaaaaacaacaaagctgATATATGTTGAATGTCATAGATTAAACAAATGTAGTGCAATTACAGCAATTACATAAGactggaaagaaataaaatgtaaccaACAAAAATGTTTGAACAGGTCCAACCTCTTTTAAATAGGTAACTGAGTTACATCAGTATTAAGAAGCTGCTGTTCACAGCCATGGTTTTGATGTCCTGCCCTTGAACCCTTACTTAAGCCATTCAGCTCGCTGATGTTCACAGAATCTGTATGTCTGTTGTAGACACAACCCTACATATCTCCTTATTTGTTTCAGAGTCAATACTCTTACTAAGGACAGGAACAATCTAACTtattttaatgataaaaatgttttttttttaatgtgcctCATTTTGACTCactgtcttttgtttttcattttcaagtcAAGTCTACATGTCATGTCTGGCATAGAGCACttattaatgtataaatgtaaagtttCTTCTACCCTGGATGACACTGtattctgtgctttttttaattatgtgtgatttttgagaaatgtgttgtcctgttttaatgtatttcaaCCCCGCCCCACCCCCACCCCGTCATCTTCACCCCTTCCCCTTTTCAAAGCCTTTTCCCTCATTCTATCAATGTGTATTAAATTCAGTgatctttgtgttttctgttcataattccatgaaaaagaaacaaagattcAGCAAGACTTGTGTTATAGAGTGGTGATGTTGTCACACTCTCTGTTTTGAAATGGATTCATGATGTTACAACACTAATATCCATCGAAGACAATGGGtgcatttgaaaaatgaaaaaaaaaaaaaaacaacaataaaaaggATGTTGCTTTTCTGACAATC
>XM_026916923.2
AGCGGAGAGATGATGCTGACACGCTGCTGGTCGTCACGTGTGACCTGCAGTCCCGATAAAGGTTAACGCGGGTGTTAGTGTTTGTCGAGCCAGCCCGTTAACCCCTTCTTTCCCCGCGGAGAACGAGCCTAAAGCCCCGGGGAGAACTAGCCTAAAGCCCCGGGGAAGACCGAGCCTACAGCCCCGGAAAGAATGAGCCTACAACCCCGGGGAGAACTAGCCTAAAGCCCCAGGAAGAACTAGCCTACAGCCCCAGGAAGAACTAGCCTACAGCCCCCGGGAAGAATGAGCCTAAAGCCCCAGGAAGAACTAGCCTACAGCCCCCGGGAAGAATGAGCCTAAAGCACCGGGGAGAACGAGCTTACAGCCCCGACACCTCCCCTTGCTTATGGTGTGACTGTTGGCTTTGGCTGAAGGAGAAGTGACCGCCCGGAACTTTTGAACTAAACACACAGGAACCAGACATTAAAGGCAAAACCACCTGAACTGGCAGCGTTTTCCTGACTCAGTCTTCAGCCGGTTCTTCTTATACTTCTATAGCACACCCCTGGACAGACCTCCTTCTAACACATAGCCATCTGGAGGCACAGATAGAGGTTGCACCCCTCCCCGCTGTCTGACAAGCTGAGACAGACTGAGTGACCTACATCCTGCAATACGCCTTGAGCACTGGAGTCTGTCTCTGCCAGCTTATTAACATAGCCTTGTTGAAAAgcgagaaaaaaaatgaaaacaagcaaaaagaACAGGTCATAGTGGCCCTAAGCTAATAGTTTCACATTCTTGAGACTTCAAgaatttttctcctttttctgccCAGTTTGTCCCATTGGCTGTTGGAGTGGCTGGTTTGGGAGTTCACTGGATGATTAACATTAGTTAAATGCAGGAAACTGTCACAGAGGCTCACTTATTCTTGATCTTTTTAGCCAATCTGGACACTTAACAaagattattgattattattattattgttatttaggAACTTCAGCAAAATCAATGAGGTTGACCCCAACTGCAGCTAAAATACCTTATACGATTTTTGCCGATCCAGCTACTTAGTACAACATTCAAGACTACTAAAAAGAGGGAGACcttacagccatttttataaCCACCTTTCCCCTCTACCCTATCCCTTATATTCCCATCAGTAAGCATTTCTGATGGTGGCAAGAAGATTCCAAACTGGATTCCTCTAAAGAATAATGGAAAGCCCACAAAGCCCAGCAAATTCCAGTGTAGGCAAAACCATAGAGAATAAAGAAACTTTCTCAGGCTATAACAACACTCTTCCTTCACCTAAGGGCAACCCTCGTTCTGTCCGCCTTTTAAAAGCCAAGCCAAACATGACCTGCCGGCGCAAGCGTGAGTTTATCTCTGATGAGAAGAAAGATGCCTCCTACTGGGAGAAACGCCGCAAGAACAACGAAGCAGCTAAGCGTTCCCGGGAAAAACGGAGACTCAATGACATGGTTTTGGAGAATAGAGTTATTGCACTGAATGATGAGAATGTACGTCTAAAAACAGAACTCCTGCAGCTGAAACTCAGATTTGGCCTCATCAGTGCAGCCTCCTACATGGAGAAGAGCCAGCAAATTGGAGGAACAATGAATGGAACTTCTGCatgctcttcctcttcttccagTCATTTCTACCCTAATGGCTACTCTAGTGGCTCCCAAGTGATGAACTCTGACTCCTCAGAGGCTGAGCAGTCTGTCCGGGGTGAGGGACTTGCCCAGTTAGTTAAGTACTCTCCTCGAGGTTCTCTCTCAGATATGTCTGATGGTTCTTCCCGTGACAGTCCAGAGCCAATGAACTATGATATCAAGCAGGAAGGGCCAGGGATAGATATGGACATTGCAAACAGCACGACCACACCAATTATGTTTAATATCCGTCGTGAGTTgtccacatcacatcaccaacATACCTTTCAATCAGGATATCACAGCCACCAACAACAGCATCATCACCAAGAGACTGTAGTCAGTGCTGCTGCACCTCCAGTGCAGACTGCTCAAAGAAGTGTCATCCTGTATCGCTCTAGCAGTGTCTCGTATCCTGTAGAGCGTTCAAGACCTCAGGAAATCACTCAACAGAAACTGCCACAGATCCTACTCCAACCTACAGAGGGATCTACCAAAGGCACTGAAAGCCTGTCAGAGGCAACCAGTCAGCATGAAAGTAAGACTTTAGACACTCTGCCTTATGAATACTCCGATGGAGAAGCAGCAATGAAACAAGCATACAGGGCCCAACATCAGCAGCTTGTGGCTAGTTGTCAGAAGGCTGAGACTATGGCACCAGACCTTTGCAGACAAGGGGGTGAAGAGCTGTACCACTATGACAGCCCACAGGATGAGGAGCCTCCAGTACTGAGTTATGAAGGAGGTCCCAGGAAAGAAGGGTACTATCAGGGTCACTCAGGAAAGGACACCTCCTTAAGTGATGGTGATCCCCGCAGTTCTGACAAAGATGCATCCACTGATGATGAGTGCCCATCTTCTTTTTGTTCTGAAACTGGCAGTTATCACCAGCAATCCCCTTTGGCTGGAGGGCCAAATTCCTCCCCACAAAGCCAAAGTAGAGACAGTCAAGCAGAGGTCAAAGGTACAGCACTACCGCACAAACTACGCCTTAAGCACAGATCTCTGAGTAATGCTGGATCAGCAACTCAAGAATCACCAACTACACCACCAGCACATGTGCATCCATTACCTCAGCACCCTTACCTGGCTTTGCCTCAGTCCAACCAGCAACTTCAGGTTGGTTGAGAAAGGGTGAGCCAGGGGTTAAGGGCCAGCCAACCCCAGAGTTCTGCAAGCAGGCCACTTCGACAGAGGAAAGAAGGACAGATTATGGAAAGAACATCCTGATGTATGCAATAGCATGAATAAGAGGCATGACTAAGAGTGAGGGACACTACGGGACCCACTGTGGTAGTATGCAAACAGACATATCCTTTAGCCTCTTCCCACCTGGCATTGGTGTGCATTGGGAGCAGAGACATAGATATAGAAATGTCAGTCCCAAAAGCAGACAGAACTTCTGGGTAAactgtattatactgtaaaGACTGCTTTGTTTCTGTATCTCATCCCATAATTACAAAAGCACTTGTGCAGCAAATGAGTGGCGTGAACGAACTGTTCACATTTTTCCCAATCACAATTTGTTATAACATGATGTCAAGGTAACAGCAAGCATGGCAATAGCAACCATTTGTGAGGCATTCTAATCTACTCACTAACTGTACCTACTGGTTTGTGTCCATTTTTATACCAAATCAGAGGCTAGCTGTTCAACACAAAACATATCAAAACATCTGAGCATTCTGGGATTATTCCCTTGACCAAAGAAAGACAATAGCTTTACATTTCATACCTCtgtcatacatttttttcattttccatatTCACAGTCCCAGACACTTTCTCTTGTCCAAGCACTTGGTTTGTATATTACtgtgatataattattatatataaatatatattttaagaataaaatcaagtttttttggaaaaaaagaaaaaattacaaGGGCAAAAAGGATTTAGATGACTCACTAATTTGTcaaaaatactgtatagtatCATTGTGTTTACTGTTCAGGTGTCATTTAAGTACCTTTTTTGattgtttaattgttattttaaaagttCTCATTGTTTTCAGCAACTTACCTTTTTAAAGTAATCAAAATGCCccaaattgttaaaaaaaaacaacaaagctgATATATGTTGAATGTCATAGATTAAACAAATGTAGTGCAATTACAGCAATTACATAAGactggaaagaaataaaatgtaaccaACAAAAATGTTTGAACAGGTCCAACCTCTTTTAAATAGGTAACTGAGTTACATCAGTATTAAGAAGCTGCTGTTCACAGCCATGGTTTTGATGTCCTGCCCTTGAACCCTTACTTAAGCCATTCAGCTCGCTGATGTTCACAGAATCTGTATGTCTGTTGTAGACACAACCCTACATATCTCCTTATTTGTTTCAGAGTCAATACTCTTACTAAGGACAGGAACAATCTAACTtattttaatgataaaaatgttttttttttaatgtgcctCATTTTGACTCactgtcttttgtttttcattttcaagtcAAGTCTACATGTCATGTCTGGCATAGAGCACttattaatgtataaatgtaaagtttCTTCTACCCTGGATGACACTGtattctgtgctttttttaattatgtgtgatttttgagaaatgtgttgtcctgttttaatgtatttcaaCCCCGCCCCACCCCCACCCCGTCATCTTCACCCCTTCCCCTTTTCAAAGCCTTTTCCCTCATTCTATCAATGTGTATTAAATTCAGTgatctttgtgttttctgttcataattccatgaaaaagaaacaaagattcAGCAAGACTTGTGTTATAGAGTGGTGATGTTGTCACACTCTCTGTTTTGAAATGGATTCATGATGTTACAACACTAATATCCATCGAAGACAATGGGtgcatttgaaaaatgaaaaaaaaaaaaaaacaacaataaaaaggATGTTGCTTTTCTGACAATC

Function

symbol description
nfil3 Predicted to enable DNA binding activity and DNA-binding transcription factor activity. Acts upstream of or within heart development and myeloid cell development. Predicted to be located in cytoplasm. Predicted to be active in nucleus. Is expressed in brain; margin; retina; and tail bud. Orthologous to human NFIL3 (nuclear factor, interleukin 3 regulated).

NR:

description
filaggrin-like

GO: NA

KEGG:

id description
K12114 VRI; vrille

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026916922.2 False 4363 mRNA 0.42 2 13210369 13220022
XM_026916923.2 True 4580 mRNA 0.43 2 13210369 13219073

Neighbor

gene id symbol gene type direction distance location
gcdhb gcdh,LOC107718595,LOC107653471,LOC107563244 coding downstream 105531 13096259 ~ 13104838 (-)
ilf3b ilf3,LOC106601349 coding downstream 146386 13047319 ~ 13063983 (-)
trnas-aga_12 NA coding downstream 383830 12826458 ~ 12826539 (-)
pik3r6b LOC108260485 coding downstream 597443 12593577 ~ 12612926 (-)
mfsd6l mfsd6l coding downstream 618864 12587675 ~ 12591505 (-)
nfil3-6 LOC108279453 coding upstream 3222 13223244 ~ 13226875 (-)
LOC113528569 NA coding upstream 21828 13241850 ~ 13268174 (-)
swsap1 swsap1 coding upstream 212205 13432227 ~ 13435356 (-)
gadd45gip1 gadd45gip1 coding upstream 274964 13494986 ~ 13498163 (-)
nme4 LOC108276282 coding upstream 442141 13662163 ~ 13669491 (-)
G210461 NA non-coding downstream 38303 13171841 ~ 13172066 (-)
G210436 NA non-coding downstream 114632 13095520 ~ 13095737 (-)
G210435 NA non-coding downstream 114892 13095244 ~ 13095477 (-)
G210427 NA non-coding downstream 131424 13077999 ~ 13078945 (-)
G210412 NA non-coding downstream 175517 13034128 ~ 13034852 (-)
G210570 NA non-coding upstream 90511 13310533 ~ 13354585 (-)
LOC113528601 NA non-coding upstream 149432 13369454 ~ 13372938 (-)
G210607 NA non-coding upstream 185117 13405139 ~ 13405357 (-)
G210640 NA non-coding upstream 225714 13445736 ~ 13446438 (-)
LOC113528343 NA non-coding upstream 243517 13463539 ~ 13475462 (-)
tom1 LOC108260160 other downstream 651156 12546333 ~ 12559213 (-)
msrb1a msrb1 other downstream 871100 12333854 ~ 12339269 (-)
LOC113528332 hs3st6,LOC102795972 other downstream 894871 12297776 ~ 12315498 (-)
zgc:162612 foxd1,LOC108278341,LOC107757501 other downstream 1509197 11699849 ~ 11701172 (-)
hmox1a hmox1,LOC108432221 other downstream 1562372 11642157 ~ 11647997 (-)
elof1 elof1,LOC103393660,LOC100703874,LOC106589640,LOC103384163 other upstream 170594 13390616 ~ 13395457 (-)
LOC117598755 NA other upstream 175444 13395466 ~ 13399225 (-)
xylt2 xylt2,LOC107748866,LOC107665700,LOC107654585 other upstream 621144 13841166 ~ 13871131 (-)
mcrip1 mcrip1,fam195b,LOC107654575 other upstream 773854 13993876 ~ 14001037 (-)
LOC113528401 ppp1r27a,LOC108279187,LOC107748880,LOC107558871,LOC107654574,LOC107665625,LOC107548727,LOC107743019 other upstream 784147 14004169 ~ 14006512 (-)

Expression


Co-expression Network