LOC113528402 (LOC108258929)


Basic Information

Item Value
gene id LOC113528402
gene name LOC108258929
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 11509731 ~ 11518087 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026916933.2
gtgtgtgtgtgtgtgtgcgtgtgtgttttgggcGGGTACACACAGAAACACGTATAGGTAACTAAGGTCAGTGAAAAGCTGAATGAATTAAGCGATTAGAAAACCTACATTTCAGTGGGAAAGTGCCTGAAAGCTTCAATCAACCCTCATGGCAATGAAATTAAGACAGTTTGGCTTTAACAGCAGACGATTTACAGCGCACTGGAATCGCCGGAATGGGGAAATTACGCAGCACTGTCGATCGATTCATGTCGTCAACCCTTCTGCTTTGAACATCAGCTATGTCCATGGCCCTACTTCtgtgtctctcctctctctgacTGTTGGTCAGAGTTTACAAACAACAGTGAATAAATGGCCTGACCGAGAGGCTTTGGtctttcttcaggatggagttCGAAAAACATTCTCTCAGTTTCAGCATGAAGTGGATCATCTGGCTGCTGGTCTTCTCGCACTCGGCTTGCAGAAGGGCGACAGGCTCGGCATCTGGGGACCAAACACTTATGAATGGATCTTGTTCCAGTTTGCCACGGCAAAGGCTGGAATCATTATGGTGTCGTTGAATCCAGCTTATAAAGTCAATGAGTTGGCATTTGCCCTGAGAAAGGTGCAATGTAATGCAGTTGTGTGCCCTACTCAGTTCAAGAGCCAGAAGTTCTATGATACGCTGAGACAGATCTGCCCAGAACTCAACACTGCAGTGTCTGGTAGTATTAGGAGTGCCAGGTTGCCAGATATGCGTAATGTGATTGTGACAGACAGCAAGGAGTCTGGTATGTTGCATGTGGACGATGTGATGCAAGCAGCAGAGAGTCGGCACTACCAGCAGCTGGACAGCTTACAGAAGATACTAAGCCCGGAAGACCCCATCAACATTCAGTTTACTTCGGGTACAACTGGGAACCCAAAAGGTGTCACACTGTCCCACCACAACATTGTAAACAATGCATATTTCATTGGGCTGCGCATGGGCTACAGCTGGAGAGCAGAGGTGCGTGTTTGTGTTCCTGTGCCCATGTACCACTGCTTTGGGTCTGTTTTGGGTGGAATGTGCATGGCGATACATGGCATCACATTGGTCTTTCCTTCAGCTGCATATGATAGACAGGCGAACTTGGAGGCTATTCAGAAAGAGAAatgcaCAGTTATCTATGGTACCCCAACAATGTACATTGACTTGCTGAGTCAGGGAAACGTTGAGAACAATAACTTGTCTTCACTTGAAACAGGTGTCATGGGTGGATCCTCGTGTCCCCCTGAAGTCATACGGAGAGTGATGAGTGACATGAAGGTTAAAGAGATAACGGTGGCTTACGGAACTACAGAAAACAGTCCAATCACATTTCTGGGGTTTCCTTTGGACAGGCTGGATCTTAAGACTGATAGTGTTGGGTACATCATGGACCACACTGAGGCTAAGGTAGTGGATTCATCGTCTGGGCGACTGCTTCCTCTGGGCCAACCTGGAGAGCTGCTCGTTCGAGGATACTGTGTCATGCAGGGCTACTGGGACGAGCCTGATAGAACACAGGAGAGCATCTCAGAGGACGGCTGGTACAAGACAGGTGATATCGCCAGCCTCAATCAATATGGCTACTGTCGTATTGAGGGACGCATAAAGGATATGATTAACCGTGGTGGGGAAAAGATCTTCCCTGCTGAGGTCGAGCAGTTTCTTTACACACATCCGAAAGTGAAAGATGTTCAGGTGGTTGGTGTGAAAGACGATAGGCTGGGAGAGCAGGTTTGTGCCTGCATTAAGGTAGCAGAAGGACAGCACTGCACTGTGGAGGAAATCAAGGCTTACTGCAAAGGCCAGATCTCCCACTTCAAAATCCCACATTATGTGATGTTCGTCGAGCGTTATCCTCTTACTGCTTCTGGGAAGATCCAGAAGAATCAACTGCGTGCAGAAATGGAGGACAGACTCGGACTGTGATGCTCAACACTATTTCCAAAGAACAGGGATCCATAGTTGCACATTTTAGCATATTAgagattttttaaagattttttttagatatttagatttttttagattagatttttaaaattaattacaatgGATAAGCAATCACATTTTATAACtgacattttaaactttattggACAACtattttatcattatattttga

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K23617 ACSF2; medium-chain acyl-CoA ligase, mitochondrial

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026916933.2 True 2138 mRNA 0.46 16 11509731 11518087

Neighbor

gene id symbol gene type direction distance location
LOC113528102 rnf222 coding downstream 14244 11493275 ~ 11495487 (-)
hs3st3b1a si:ch211-216b21.2,hs3st3a1,LOC108260710,LOC107704231,LOC107684140,LOC107753271 coding downstream 71396 11426285 ~ 11438335 (-)
LOC113528663 NA coding downstream 77103 11432510 ~ 11432628 (-)
ttyh2l LOC108277373,LOC108432236 coding downstream 318216 11154915 ~ 11191515 (-)
LOC113528317 chmp6,LOC108277388,LOC108432238,LOC106606311,LOC105939499 coding downstream 357568 11147394 ~ 11152163 (-)
slc16a5b LOC108274816 coding upstream 2679 11520766 ~ 11529442 (-)
LOC113528647 NA coding upstream 18473 11536560 ~ 11536678 (-)
LOC113528658 NA coding upstream 47923 11566010 ~ 11566128 (-)
spc24 spc24 coding upstream 227404 11745491 ~ 11751424 (-)
kri1 kri1 coding upstream 234956 11753043 ~ 11763823 (-)
G209541 LOC108256081 non-coding downstream 32935 11403078 ~ 11476796 (-)
G209538 NA non-coding downstream 108308 11400722 ~ 11401423 (-)
G209529 NA non-coding downstream 120500 11388960 ~ 11389231 (-)
LOC113528410 NA non-coding downstream 288353 11218659 ~ 11221378 (-)
G209189 NA non-coding downstream 364747 11089013 ~ 11144984 (-)
G209553 atp5h,LOC103042933,LOC101487002,LOC107599347 non-coding upstream 13489 11531576 ~ 11535697 (-)
G209618 NA non-coding upstream 82385 11600472 ~ 11601244 (-)
G209624 NA non-coding upstream 92547 11610634 ~ 11617188 (-)
LOC113527962 NA non-coding upstream 101453 11619540 ~ 11626068 (-)
G209646 hmgxb4 non-coding upstream 146398 11664485 ~ 11665129 (-)
tecpr1b LOC108276900 other downstream 1039213 10450724 ~ 10470518 (-)
hoxb8a hoxb8a,LOC108278530,LOC108413053,LOC103044850,LOC107582957,LOC107662386,LOC107585089 other downstream 1777165 9729851 ~ 9732566 (-)
copz2 copz2,LOC108260256,LOC108413159,LOC107740614,LOC107662379,LOC107710054,LOC107585036,LOC107687783,LOC105013247,LOC108246742,LOC106527321,LOC106912034 other downstream 2035253 9464331 ~ 9474478 (-)
prr15la LOC108273894,LOC108412372 other downstream 2090147 9409804 ~ 9419584 (-)
dnal4a dnal4,LOC108261343,LOC108412416,LOC108436609,LOC106591471 other downstream 2306091 9196496 ~ 9203640 (-)
hmox1a hmox1,LOC108432221 other upstream 124070 11642157 ~ 11647997 (-)
zgc:162612 foxd1,LOC108278341,LOC107757501 other upstream 181762 11699849 ~ 11701172 (-)
LOC113528332 hs3st6,LOC102795972 other upstream 779689 12297776 ~ 12315498 (-)
msrb1a msrb1 other upstream 815767 12333854 ~ 12339269 (-)
tom1 LOC108260160 other upstream 1028246 12546333 ~ 12559213 (-)

Expression


Co-expression Network