atp6v0ca (vatl,LOC108413863,LOC106517404)


Basic Information

Item Value
gene id atp6v0ca
gene name vatl,LOC108413863,LOC106517404
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 7302423 ~ 7305900 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026916935.2
TGCCTCCGGATCGCCATTTTCTTCCTCTCCGCCGGTGAGctgctcttctgtgggattcgTGACTTCGCTCTTAGACTCTCCGGTTCTTTCGAGCCTTTGACATTCTGAAAGGGTCACTCCTGAAAGCTGTAACGCTTAGACTGAGGCCATTTAGACtcgttttcttttctctctggcTAGTTTGTTTGTGTCCTGAAGGATGTCCTCCGACAATCCCGAGTATTCCCCCTTCTTCGCAGTGATGGGCGCCTCAGCAGCGATGGTCTTCAGCGCACTTGGTGCTGCTTACGGCACAGCCAAGAGTGGCACAGGCATTGCTGCCATGTCGGTGATGAGGCCGGAGCTGATCATGAAGTCCATCATCCCCGTGGTCATGGCGGGTATCATCGCCATCTACGGCTTAGTGGTGGCTGTACTCATCGCCAACAGCATTTCAGAGACTGTCCCACTCTACAAgAGCTTTCTTCACCTGGGTGCTGGGCTGAGCGTGGGTCTGAGTGGCCTTGCTGCCGGCTTTGCCATTGGCATCGTTGGAGATGCAGGAGTTCGAGGCACGGCCCAGCAGCCTCGCCTTTTCGTTGGCATGATCCTTATCCTGATCTTTGCTGAGGTGCTGGGGCTCTATGGGCTTATTGTTGCCCTTATCCTCTCCACCAAGTAAACAgcgttaataataataattataattatacgGATACAAACACCCACccactacaaacacacacgaaTACCAACTCTAACATCCACTTAAGGAAACACATTGAGTAACTACACCACATGAACGGAAGAGAggggagtgtgtttgtgtatgtaagTACGTGTGTAAGTATGTaggtgtgtgcgtgcgtgtttgTGCTTGGTGGGCAATTAAATGTATGAGAGAgctctcctctctgtgtgtattaTAGTAGCCTGACGTGCGTCTCCTTGTAAATGCGCTGTGTAGCTTGTGATCTTGTCTTGTTGGTGTTTAGATAGCTGCCCTTACCCTTACCGCTACACTTGTTTGTTTGCGTTTTTATTTCGTCTATTTCCCCCTCATGTTTGAAGAACAAATcatccaggtttttttttttttttttttctattttgggACCATTTGCTGATTAATGCTGATATTGAGGacttaactgtaaaaaaaaaatacatttttcactGATTATTTATGAAGATTTTGAAATGTTCATGAAATTGTTTAATTGAAAGTCTTTATTGAAATCCCAGTGATctctatatataaatacatgtatCAGAAGTATATATCTGTATAGGTAGGTGAATTGCACTGTGGGTAATTTGTGCTTGGAGTTCCTCTGGATGTAATCATCAGTTACCATGCAAATTTTGTTGTCTGTATCAAGGTTATTGGTGTGGAAGTTTACAGAGCGTGCCGTCTGTGAGTGTATGCACGCatatgtttgtgtgaatgtgtatgttttAATTCTAAGGTGACATTCTTTGAACAATGTGTAGCGTTATACCTgtagctactactgtttctgGTTGCATTGATGGGCATACACCAGCCCGGCCCGTCCTGTTTCCAAATAAAACTTCCTCAACTTC

Function

NR:

description
Vacuolar ATP synthase 16 kDa proteolipid subunit

GO:

id name namespace
GO:0006200 obsolete ATP catabolic process biological_process
GO:0033179 proton-transporting V-type ATPase, V0 domain cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008553 proton-exporting ATPase activity, phosphorylative mechanism molecular_function

KEGG:

id description
K02155 ATPeV0C, ATP6L; V-type H+-transporting ATPase 16kDa proteolipid subunit

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026916935.2 True 1566 mRNA 0.45 3 7302423 7305900

Neighbor

gene id symbol gene type direction distance location
trnac-gca_21 NA coding upstream 2739 7299613 ~ 7299684 (+)
lasp1 LOC108258608,LOC108413872,LOC107689048,LOC107745925,LOC107552489,LOC107567378,LOC107754308 coding upstream 12043 7274904 ~ 7290380 (+)
trnac-gca_18 NA coding upstream 29892 7272460 ~ 7272531 (+)
arl5c LOC108260527,LOC107754318,LOC107670909,LOC107567387,LOC107745936,LOC107689047,LOC108412527 coding upstream 34510 7263146 ~ 7267913 (+)
cacnb1 cacnb1,LOC108413880,LOC106607253,LOC107552492 coding upstream 42560 7227341 ~ 7259863 (+)
mrps34 mrps34,LOC107567325,LOC107670906 coding downstream 18060 7323960 ~ 7327094 (+)
nme3 nme3,LOC107661191 coding downstream 22220 7328120 ~ 7334236 (+)
cramp1 cramp1 coding downstream 83175 7389075 ~ 7407151 (+)
dhrs7b dhrs7b,LOC107661099,LOC107755107,LOC107745957 coding downstream 101646 7407546 ~ 7416796 (+)
LOC113528203 adcy10 coding downstream 177881 7483781 ~ 7497533 (+)
G207084 NA non-coding upstream 5450 7294485 ~ 7296973 (+)
G207025 NA non-coding upstream 243604 7054386 ~ 7058819 (+)
G206955 NA non-coding upstream 300255 6930320 ~ 7002168 (+)
G206942 NA non-coding upstream 371037 6898842 ~ 6931386 (+)
G206835 ptrf non-coding upstream 492070 6730685 ~ 6810353 (+)
G207111 NA non-coding downstream 12127 7318027 ~ 7318360 (+)
G207140 NA non-coding downstream 80116 7386016 ~ 7388543 (+)
G207155 NA non-coding downstream 134177 7440077 ~ 7440281 (+)
G207157 NA non-coding downstream 137169 7443069 ~ 7443753 (+)
G207158 NA non-coding downstream 138923 7444823 ~ 7528738 (+)
LOC113528597 gjc1,LOC108412533,LOC107754260,LOC107731105,LOC107567456,LOC107653474,LOC107570945,LOC107690314 other upstream 170456 7108178 ~ 7131967 (+)
eftud2 eftud2,LOC107690313,LOC107731090,LOC107653466 other upstream 200208 7084441 ~ 7102215 (+)
LOC117598831 LOC106607284,LOC108262339,LOC108259095,LOC108259092,LOC108441610 other upstream 1041566 6252344 ~ 6260857 (+)
ypel3 ypel3,ypela,LOC108259066,LOC103040367,LOC108411043,LOC103393221,LOC105012807,LOC107686999,LOC107590566,LOC106600728 other upstream 1107459 6180096 ~ 6194964 (+)
mapk3 mapk3,LOC108256206,LOC108411041,LOC107567791,LOC107690275,LOC107686994 other upstream 1127057 6160334 ~ 6175366 (+)
spsb3a spsb3,spsb3a,LOC107689049 other downstream 3307 7309207 ~ 7321965 (+)
G207480 LOC107834952 other downstream 547291 7853191 ~ 7853509 (+)
trnas-cga_1 NA other downstream 702286 8008186 ~ 8008411 (+)
asphd1 asphd1,LOC107568490,LOC107755186,LOC107552472,LOC107739384 other downstream 1644566 8950466 ~ 8958100 (+)
nupr1b nupr1,LOC108413333,LOC107660958,LOC107739393,LOC107567154,LOC100692788,LOC103393451 other downstream 1755663 9061563 ~ 9063413 (+)

Expression


Co-expression Network