tmem107 (tmem107,LOC108274527)


Basic Information

Item Value
gene id tmem107
gene name tmem107,LOC108274527
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 20419758 ~ 20424672 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026916948.2
CAGGGGGAGATAGTGATCACATTAACCACATGAACCGAGGAAAGTAGCGTTGCTGTAGTAACGGGTAGGAGAGACGCTTTCGGCTAATTCTCTTGTTAAATACTCCGTTTAAATATGACTGTGTGAAGGAAATTTAAAAAGCTGCATGTGTGATATGGAGTGCTGACTGTGGCTACATGAATAACTGAAGACTAACCGTTATTCACCACTACTGCAGTCTAACCTGAATGACCCTTTTGGCTTTGACATGTCAGTGATAAACAGCCTCGTCCCAGCTCGGTTTCTCGTCATCACCGCTCACCTTGTGATGGTCATCACCATCTTCTGGTCTCGgGGAAACAATGTTAAATCATGTTTACCACTGGACTTCACAGAGGAGCAGTACACGACTGAGGACAAccggttgatTATTGCTCTATCAGTAACTCTGTGTCTATTTGCCATTGAATTGTTTGGATTCTTCTCCGGTGTCTCGATGTTCAACAGTAACCAAGGAGTGCTGTCTATGGCGTGTCACTGCAGCGCatccgtctctctgtctttcttcgTCTTTCAGCAGTGGGAATGCTGGGTTTACTGGATAGTCTTCGCATTCTGCAGTGTCATTCCTGCCCTGTGTGAGCTGGTACTGATCATCGCTGTGTTCGGACTGAAGAAGAAGCCGATGTGAAGGTTTAAATCCGTGTGCCTAGTATGACGTCCACATTAGTAGCACAGATCTACTGTATCTGTAACTTTATAATGAGCTATGCAACATCAGCATTGGTGGATATTCCAGTGTTCTAAGATCTGTATTGTATAAAACTGTATAGTGCTGAAGATTTTACCCCAAATCATGTATATTGCTACAAATGACTTACctcggaagtgggaagtcggaGCTCCCAATGACATCATTTTCGACCTCCGTGCTATTGAGGTacaaagtgtatatatatatatgtacatattttgttagcaacaagctagccagctaactgtgctgagtgatgtatattttccttttcAAAACAGCACATATAGTCAATGATATACTGTCGATTTAACAAGTAAATATATGTCTGTTGATTGATCTAAggcaaatactgtatatacatgtatacagcATAATTCATTTAATAGCAAAATGAGCCATGCTTATTTGACGTCACCCCCTGAACTCGGAGGAACTCATAGTTGAGAAGATTACCCCGAGTTCACGGGTAGGAATTTcaactatgattttttttttttttaaaacaaggaaTTAAAGTATTTTTCACCATTGTATCCAATGTTCTTGTACATTATAGAAAGAAGCTTGCAAAAgagtattttatatttcaaattGCTTAGAGTATTTCTAGATGCTCAATAAAGATGACCATGCACCACAAGGACCCTGCGcatatgataaaaatatttgtaaatagcaatacaatgtt
>XM_034309805.1
CAGGGGGAGATAGTGATCACATTAACCACATGAACCGAGGAAAGTAGCGTTGCTGTAGTAACGGGTAGGAGAGACGCTTTCGGCTAATTCTCTTGTTAAATACTCCGTTTAAATATGACTGTGTGAAGGAAATTTAAAAAGCTGCATGTGTGATATGGAGTGCTGACTGTGGCTACATGAATAACTGAAGACTAACCGTTATTCACCACTACTGCAGTCTAACCTGAATGACCCTTTTGGCTTTGACATGTCAGTGATAAACAGCCTCGTCCCAGCTCGGTTTCTCGTCATCACCGCTCACCTTGTGATGGTCATCACCATCTTCTGGTCTCGgGGAAACAATGTTAAATCATGTTTACCACTGGACTTCACAGAGGAGCAGTACACGACTGAGGACAAccgTGTCATTCCTGCCCTGTGTGAGCTGGTACTGATCATCGCTGTGTTCGGACTGAAGAAGAAGCCGATGTGAAGGTTTAAATCCGTGTGCCTAGTATGACGTCCACATTAGTAGCACAGATCTACTGTATCTGTAACTTTATAATGAGCTATGCAACATCAGCATTGGTGGATATTCCAGTGTTCTAAGATCTGTATTGTATAAAACTGTATAGTGCTGAAGATTTTACCCCAAATCATGTATATTGCTACAAATGACTTACctcggaagtgggaagtcggaGCTCCCAATGACATCATTTTCGACCTCCGTGCTATTGAGGTacaaagtgtatatatatatatgtacatattttgttagcaacaagctagccagctaactgtgctgagtgatgtatattttccttttcAAAACAGCACATATAGTCAATGATATACTGTCGATTTAACAAGTAAATATATGTCTGTTGATTGATCTAAggcaaatactgtatatacatgtatacagcATAATTCATTTAATAGCAAAATGAGCCATGCTTATTTGACGTCACCCCCTGAACTCGGAGGAACTCATAGTTGAGAAGATTACCCCGAGTTCACGGGTAGGAATTTcaactatgattttttttttttttaaaacaaggaaTTAAAGTATTTTTCACCATTGTATCCAATGTTCTTGTACATTATAGAAAGAAGCTTGCAAAAgagtattttatatttcaaattGCTTAGAGTATTTCTAGATGCTCAATAAAGATGACCATGCACCACAAGGACCCTGCGcatatgataaaaatatttgtaaatagcaatacaatgtttatt

Function

symbol description
tmem107 Predicted to be involved in non-motile cilium assembly and protein localization to ciliary transition zone. Predicted to act upstream of or within cell projection organization. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of MKS complex. Human ortholog(s) of this gene implicated in Meckel syndrome 13 and orofaciodigital syndrome XVI. Orthologous to human TMEM107 (transmembrane protein 107).

NR:

description
PREDICTED: transmembrane protein 107-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026916948.2 True 1424 mRNA 0.40 6 20419762 20424672
XM_034309805.1 False 1230 mRNA 0.39 4 20419758 20424672

Neighbor

gene id symbol gene type direction distance location
aurkb aurkb,plk4,LOC108431899,LOC107704466,LOC107712916,LOC107705065,LOC105908766 coding downstream 1377 20414100 ~ 20418381 (-)
trnal-aag_9 NA coding downstream 6828 20412849 ~ 20412930 (-)
bod1l1 bod1l1,LOC107705061 coding downstream 7630 20400480 ~ 20412128 (-)
LOC117598840 bod1l1 coding downstream 19283 20394684 ~ 20400475 (-)
nkx3-2 nkx3-2 coding downstream 33133 20383757 ~ 20386625 (-)
LOC113528321 fbxl12 coding upstream 2087 20426759 ~ 20430515 (-)
LOC113528637 fat4,LOC107717300,LOC107694441 coding upstream 182952 20607624 ~ 20697160 (-)
spata5 spata5 coding upstream 479852 20904524 ~ 21003477 (-)
LOC113528290 LOC108273900 coding upstream 657347 21082019 ~ 21143863 (-)
LOC113528020 LOC108274616,LOC107676766,LOC108242416,LOC103365636,LOC107660492,LOC107088227 coding upstream 722394 21147066 ~ 21155800 (-)
G214159 NA non-coding downstream 363614 20020552 ~ 20056144 (-)
G213879 NA non-coding downstream 755996 19663337 ~ 19663762 (-)
G213716 tnrc6a non-coding downstream 997343 19417184 ~ 19422415 (-)
G213549 NA non-coding downstream 1346773 19023758 ~ 19072985 (-)
G213407 NA non-coding downstream 1570611 18792435 ~ 18849147 (-)
G214325 NA non-coding upstream 11380 20436052 ~ 20438834 (-)
G214331 NA non-coding upstream 20851 20445523 ~ 20445748 (-)
G214493 NA non-coding upstream 354093 20778765 ~ 20781702 (-)
G214526 NA non-coding upstream 416759 20841431 ~ 20841634 (-)
G214626 NA non-coding upstream 478426 20903098 ~ 20903837 (-)
hs3st1 hs3st1 other downstream 206129 20205339 ~ 20213629 (-)
slc2a9l2 slc2a9 other downstream 281545 20039787 ~ 20138213 (-)
lyar lyar other downstream 435609 19940354 ~ 19984149 (-)
rbbp6 rbbp6 other downstream 971199 19429217 ~ 19448559 (-)
si:dkey-204f11.64 LOC108274053 other downstream 1592024 18823471 ~ 18827734 (-)
spry1 spry1 other upstream 475385 20900057 ~ 20905271 (-)
fgf2 fgf2,LOC107717315 other upstream 589767 21014439 ~ 21028081 (-)
slc16a2 LOC108279893,LOC107596364 other upstream 812130 21236802 ~ 21272507 (-)
LOC113528016 thegl other upstream 927609 21352281 ~ 21359190 (-)
G215187 NA other upstream 1251599 21676271 ~ 22269092 (-)

Expression


Co-expression Network