si:dkey-225f5.4 (LOC108258433)


Basic Information

Item Value
gene id si:dkey-225f5.4
gene name LOC108258433
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 9886784 ~ 9893496 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026916952.2
TAagtttcaaaacaaaaatggcGACTGAAAGAGCAGTAGCGTTACTAGAAAGAACTGACCCTTCTCTTTTGAAGACATGCGAATCCACCGAGGCTCAGGACGCTGGAGAGGGAAAAGTTATGACAGCTTATTTAATGGACTGCAGACGGAAACAGAAGATCATGTGCCAACAGTATGGTGTGATGGATGATATGTTGAAGCTTCTTGCAGGTCTGGAGTCAGCAGAACAGTTCCTGAATGAACCATGTCCACCCAAACCAGACAATGAGGCCAGCCCTCCCTGGAAGGCTTTGAAGGCAGAGTATCTTGAGCACGTCCAGGAAGTGGAGGGGCTGATAGGCACACTGGTGGAGTGCATGGAAGAGCTACTCAAAAAACGGCAAAGGCTGGAGGCTCTGCTCGTTGCCCTGGAACAGAAAAAAGAGGAGTGCAAGGAACAGGAGCGAGCTGCACTACAGTCGAAGCAGAGAGCTGAGAAACAGATGAATCTGCAAATAGACGATTCCCTGCAGAGAGCCCATGATGCCTTGCGTGCTTGTGACAGACGGTTTTCTGAACTCAAAATTCAAGTTGATGAACAGTTAGCCAAGGTGGCTAATTGGACGGCTTTTAGAGACAGGTTGCAGGCTACCCTAGAAGTCACTCAGGCTAATATGCAGTACAGGTTGTTGTCTGCGAGCCCCTCTGAGATGTGTCTAGAGCTTCTGCCCCGCTCCACCCAGCAGTCCCTGCAGcctctgcatctgtctgtcACCATGACCACAGAAGACCACTTCCGCCTGCAGGTTTTTCAGGGCACTGCAGGCCTCTTAGAGGAGTCAGTGGAAGGCCCTGTAAGAGAGCTGAGTGCTGCACTGTTGGAAGTGATGGAGTGCTACATTAGTCAAGGAAAGATGCTTGCTGAAATCCAGGCTCTGCATTCCAGGTTTGCAATTGACTGGTGTCCAGCAAAGCGCCTGCTGATCTTCCTCAAGTCCGCCACCACAGTGTGCCACCTGGAGCTGGACGAGGGCTATCCATCAAGTGGCCGTGCCAAACTGCTTGCTGTGCGCAAAGATGGCAACCTTCTCAATCTCTCTGCCCTGCAGCCCCCTGTGATGAATCCTACTCTGACAGATTGGCTTGAGTTTCTCTCGTCATACCCAGATTTCTGAACACTGCCTGCAGCATCATGCTAGTCAGGTGAACTGCAGTGTCCAAGTGAATCAGTACAAAATTTTTTTACTATGGCTGTATCTCAACTGTATGTGTATACTAAAATAGTCTTTTGTTTCAACTGGTAATGtatataaactgaaaaaataattatCCAGTGAGATTAGTACCTGTCTACACCAAGTAATGCGTTAGCCGGAACAGATTTTGAGCATCAATATGTACATCAAGTGTtgtcttttctgtgtttgttttgttctgtgtattCTATCTTACTGTCCTTATATAGGAAACTCCTGTAGGGTGTACTAaatcattctgtgtgtgtatttgtataataaattcattttttgggggaaaaaaagtcccACAATAGGTAGTTTAAAAGGACTTTTATCCAATAGAAAATGTAGAGAATTATAGAGAACTGATCCAGTGTTATATCTCACTCTATACACTCACTAGCCACTtaaataggaacacctgtacctcttctcattcatacatttattcaaTCTGCCCAACATATGGTGGCATAAAACCAtacacatacaggtcaagagcttcaagtaatgttagtaatgttgacatcatacatcagaatgggtggggaaaaaaaaaaaaaaaaaaa
>XM_034310316.1
tggcGACTGAAAGAGCAGTAGCGTACGTTACTAGAAAGAACTGACCCTTCTCTTTTGAAGACATGCGAATCCACCGAGGCTCAGGACGCTGGAGAGGGAAAAGTTATGACAGCTTATTTAATGGACTGCAGACGGAAACAGAAGATCATGTGCCAACAGTATGGTGTGATGGATGATATGTTGAAGCTTCTTGCAGGTCTGGAGTCAGCAGAACAGTTCCTGAATGAACCATGTCCACCCAAACCAGACAATGAGGCCAGCCCTCCCTGGAAGGCTTTGAAGGCAGAGTATCTTGAGCACGTCCAGGAAGTGGAGGGGCTGATAGGCACACTGGTGGAGTGCATGGAAGAGCTACTCAAAAAACGGCAAAGGCTGGAGGCTCTGCTCGTTGCCCTGGAACAGAAAAAAGAGGAGTGCAAGGAACAGGAGCGAGCTGCACTACAGTCGAAGCAGAGAGCTGAGAAACAGATGAATCTGCAAATAGACGATTCCCTGCAGAGAGCCCATGATGCCTTGCGTGCTTGTGACAGACGGTTTTCTGAACTCAAAATTCAAGTTGATGAACAGTTAGCCAAGGTGGCTAATTGGACGGCTTTTAGAGACAGGTTGCAGGCTACCCTAGAAGTCACTCAGGCTAATATGCAGTACAGGTTGTTGTCTGCGAGCCCCTCTGAGATGTGTCTAGAGCTTCTGCCCCGCTCCACCCAGCAGTCCCTGCAGcctctgcatctgtctgtcACCATGACCACAGAAGACCACTTCCGCCTGCAGGTTTTTCAGGGCACTGCAGGCCTCTTAGAGGAGTCAGTGGAAGGCCCTGTAAGAGAGCTGAGTGCTGCACTGTTGGAAGTGATGGAGTGCTACATTAGTCAAGGAAAGATGCTTGCTGAAATCCAGGCTCTGCATTCCAGGTTTGCAATTGACTGGTGTCCAGCAAAGCGCCTGCTGATCTTCCTCAAGTCCGCCACCACAGTGTGCCACCTGGAGCTGGACGAGGGCTATCCATCAAGTGGCCGTGCCAAACTGCTTGCTGTGCGCAAAGATGGCAACCTTCTCAATCTCTCTGCCCTGCAGCCCCCTGTGATGAATCCTACTCTGACAGATTGGCTTGAGTTTCTCTCGTCATACCCAGATTTCTGAACACTGCCTGCAGCATCATGCTAGTCAGGTGAACTGCAGTGTCCAAGTGAATCAGTACAAAATTTTTTTACTATGGCTGTATCTCAACTGTATGTGTATACTAAAATAGTCTTTTGTTTCAACTGGTAATGtatataaactgaaaaaataattatCCAGTGAGATTAGTACCTGTCTACACCAAGTAATGCGTTAGCCGGAACAGATTTTGAGCATCAATATGTACATCAAGTGTtgtcttttctgtgtttgttttgttctgtgtattCTATCTTACTGTCCTTATATAGGAAACTCCTGTAGGGTGTACTAaatcattctgtgtgtgtatttgtataataaattcattttttgggggaaaaaaagtcccACAATAGGTAGTTTAAAAGGACTTTTATCCAATAGAAAATGTAGAGAATTATAGAGAACTGATCCAGTGTTATATCTCACTCTATACACTCACTAGCCACTtaaataggaacacctgtacctcttctcattcatacatttattcaaTCTGCCCAACATATGGTGGCATAAAACCAtacacatacaggtcaagagcttcaagtaatgttagtaatgttgacatcatacatcagaatgggtggggaaaaaaaaaaaaaaaaaaa

Function

NR:

description
PREDICTED: uncharacterized protein LOC107662429 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026916952.2 True 1786 mRNA 0.45 10 9886784 9893496
XM_034310316.1 False 1772 mRNA 0.45 10 9886802 9893496

Neighbor

gene id symbol gene type direction distance location
igf2bp1 igf2bp1,LOC108412303,LOC107717213,LOC107667758,LOC107582884,LOC106607494 coding upstream 6899 9840890 ~ 9879885 (+)
ube2z ube2z coding upstream 59775 9814084 ~ 9827009 (+)
atp5mc1 atp5g1,LOC108256653,LOC108413019,LOC107740625,LOC107662391,LOC107585044,LOC107582887 coding upstream 75203 9806798 ~ 9811581 (+)
eve1 LOC108275867,LOC108412315 coding upstream 104862 9779523 ~ 9781922 (+)
nfe2l1a LOC108279857 coding upstream 398243 9477811 ~ 9488541 (+)
msl1a msl1 coding downstream 19272 9912768 ~ 9917101 (+)
casc3 casc3 coding downstream 24466 9917962 ~ 9926203 (+)
LOC113528352 snu13,snu13b,LOC103040872,LOC101154660,LOC105910236 coding downstream 299308 10192804 ~ 10195206 (+)
LOC113528384 slc25a17,LOC108412891,LOC106601749,LOC107666095,LOC107743042,LOC107548713 coding downstream 321549 10215045 ~ 10222874 (+)
helz helz,LOC107691233,LOC107665819 coding downstream 405391 10298887 ~ 10341715 (+)
G208504 NA non-coding upstream 3657 9864977 ~ 9883127 (+)
G208507 NA non-coding upstream 27902 9846084 ~ 9858882 (+)
G208472 NA non-coding upstream 138774 9746285 ~ 9748010 (+)
G208415 hoxb9,hoxb9a,LOC107662432,LOC107585091 non-coding upstream 147918 9737009 ~ 9738866 (+)
G208430 NA non-coding upstream 152737 9732608 ~ 9734047 (+)
G208488 col1a1a,LOC108279263,LOC107585052,LOC107740634 non-coding downstream 145913 10039409 ~ 10061965 (+)
G208700 NA non-coding downstream 327787 10221283 ~ 10221539 (+)
G208701 dxo,LOC107752708,LOC107666098,LOC107691245,LOC107743041 non-coding downstream 332087 10225583 ~ 10226503 (+)
G208783 NA non-coding downstream 448412 10341908 ~ 10342224 (+)
G208911 NA non-coding downstream 933529 10827025 ~ 10828913 (+)
nupr1b nupr1,LOC108413333,LOC107660958,LOC107739393,LOC107567154,LOC100692788,LOC103393451 other upstream 823371 9061563 ~ 9063413 (+)
asphd1 asphd1,LOC107568490,LOC107755186,LOC107552472,LOC107739384 other upstream 928684 8950466 ~ 8958100 (+)
trnas-cga_1 NA other upstream 1878373 8008186 ~ 8008411 (+)
G207480 LOC107834952 other upstream 2033275 7853191 ~ 7853509 (+)
spsb3a spsb3,spsb3a,LOC107689049 other upstream 2564819 7309207 ~ 7321965 (+)
rapgefl1 rapgefl1,LOC107717207,LOC107662398,LOC107740631,LOC107667751,LOC107585050,LOC106600822 other downstream 50810 9944306 ~ 9987773 (+)
G208781 cacng4b,LOC108259704,LOC106606650,LOC107565862,LOC107691234,LOC106601773,LOC107724746,LOC107713946 other downstream 455906 10349402 ~ 10781459 (+)
cdc42ep4a LOC108256079,LOC108432235,LOC103033379 other downstream 1386584 11280080 ~ 11388020 (+)
luc7l3 luc7l3,LOC107674472,LOC107726809,LOC107654661 other downstream 1673623 11567119 ~ 11577823 (+)
tbc1d16 tbc1d16,LOC107559246,LOC107689993,LOC107670685,LOC107562324 other downstream 2155911 12049407 ~ 12086058 (+)

Expression


Co-expression Network