LOC113528424


Basic Information

Item Value
gene id LOC113528424
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 18449286 ~ 18451161 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026916958.2
CTAAAGTCGGCGTTATTTCCTGTTATGTCTACAAGAAGCAGCACGCTGTAAGGAGTAGATGTAGTTTTGCTGATGTAGCCATGATGACAGCTCTGACTTTGCGCTTTACTGCTCTTCTGGCTGTCTACACCGTTCTAGGAGCAGCCTCTGAGAGGGAGAATGGATTTGTAAAGATGAAAAAGGGGGACAATTTAACCATGGAGTGCAACACAAAGgacaataaaaatgatcatttatcaCTATATGCCAGACTCCCAAAAAAGCATGTAGTGTTGGCCTATGACGGACATACTAACAACTTTAGTCTCGGTGAGGAGTACACTGAAAGAGTGAAGATCAGTGGCACCATGCACAAACTAACTGTGAGGATTAGGGACCTGCAGCTGAACGACACTGGACTGTACATAGGCCTGTATAGAAAatttaatttggaaaaaaatgtagatgaggaagaagaaggcTGCAGCATTCTCCTGTTTGTGAATAATGTGGATAAGACCATACTCTCTGAAAAATCAACTGGAAAAGGGTCATCTGGCATGTCTGAGCCACTGGTGCTGGTCTTTGCCCTGACTGCATGCACTATGCTTGTAGTGTGTTTCCTGGTGATGTGGGTGTTAGCACCCAAGgTGAAGGCCCTGTGTGCGAATCAGGCAGATGATGCTTCAAGGGAATATAACCCAGTCTATGAGGATATGCACCGTGTGCGAAAATAAGAtgatcttttttccccctttgtttaaaattttaaggGTTGTTAATATTGTCTTTACTGAAATACTCAAGAATGCTTTTAAGCTTCCCTGCTATTTTTGCATTCAAATTGTCAGATGGTGTAATATGTATTCAATTactgtggcttttttttgtttactgtcaTATGTGTAATattgtaactgaaataaaata

Function

GO:      GO:0070011

KEGG:

id description
ko04060 Cytokine-cytokine receptor interaction
ko05323 Rheumatoid arthritis

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026916958.2 True 909 mRNA 0.41 4 18449286 18451161

Neighbor

gene id symbol gene type direction distance location
tac4 NA coding upstream 80697 18360781 ~ 18368589 (+)
LOC113527984 LOC108258094,LOC103035820,LOC108438916 coding upstream 385625 18062037 ~ 18063661 (+)
mfsd11 mfsd11,mfs11 coding upstream 406184 18021085 ~ 18043102 (+)
LOC113528388 myadml2,LOC108275479,LOC103027436,LOC107671249,LOC107571305,LOC107717480,LOC107552108,LOC107675441 coding upstream 638796 17808272 ~ 17810490 (+)
ccdc137 NA coding upstream 681617 17749174 ~ 17767669 (+)
sept9a sept9,LOC108411966 coding downstream 21223 18472384 ~ 18558892 (+)
tnrc6c1 tnrc6c,LOC107724432 coding downstream 182337 18633498 ~ 18697593 (+)
yipf2 yipf2 coding downstream 342143 18793304 ~ 18801817 (+)
clpp clpp,LOC107753176,LOC107590418,LOC107689627 coding downstream 378132 18829293 ~ 18836201 (+)
rgs9a rgs9,rgs9a,LOC108278703,LOC108438013,LOC107590386,LOC107721500,LOC107719993 coding downstream 426513 18877674 ~ 18899981 (+)
G212899 NA non-coding upstream 466480 17980998 ~ 17982806 (+)
G212889 NA non-coding upstream 550305 17898781 ~ 17898981 (+)
G212870 NA non-coding upstream 563004 17886009 ~ 17886282 (+)
G212804 NA non-coding upstream 622936 17819418 ~ 17826350 (+)
G212783 NA non-coding upstream 667358 17781712 ~ 17781928 (+)
G213191 NA non-coding downstream 66152 18517313 ~ 18565782 (+)
G213192 NA non-coding downstream 79198 18530359 ~ 18534344 (+)
G213221 NA non-coding downstream 255256 18706417 ~ 18713626 (+)
G213244 NA non-coding downstream 395055 18846216 ~ 18898291 (+)
G213314 NA non-coding downstream 507869 18959030 ~ 18960740 (+)
zgc:163143 NA other upstream 14758 18425179 ~ 18434528 (+)
LOC113528171 NA other upstream 33939 18409841 ~ 18415347 (+)
LOC113528485 prkar1b,LOC107661853,LOC107653458 other upstream 106326 18183693 ~ 18342960 (+)
cenpx cenpx other upstream 716280 17698673 ~ 17733006 (+)
srl srl,LOC108261333,LOC107695714,LOC107661647,LOC107718567,LOC107553668 other upstream 1336130 17087284 ~ 17113156 (+)
smim22 NA other downstream 463565 18914726 ~ 18919942 (+)
G213491 NA other downstream 692913 19144074 ~ 19145240 (+)
gng13b NA other downstream 850193 19301354 ~ 19313218 (+)
LOC113528521 tnrc6a,LOC107719974,LOC107590441,LOC107721518,LOC107654452,LOC107688138 other downstream 922075 19373236 ~ 19455034 (+)
LOC113528458 LOC108275785 other downstream 1421915 19873076 ~ 19911732 (+)

Expression


Co-expression Network