cntnap1 (cntnap1,LOC107721486,LOC107654512,LOC107720006,LOC107601289,LOC107590375,LOC107688128)


Basic Information

Item Value
gene id cntnap1
gene name cntnap1,LOC107721486,LOC107654512,LOC107720006,LOC107601289,LOC107590375,LOC107688128
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 4563378 ~ 4590665 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026916962.2
CAGCGCGAGTTAAAGTTACCGTCAAAGCGGAGCGCCGGGAAAGAGCCAGACTCCGCTGCCCCGGTACCCCGCTACCCCGCTGCCCCGGTACCCCGCTACCCCGGAGGTGTGGACGCTAATGATCTGATCAGCGGGGCGAGGCGGGAATCCGACCCCAGTGCAGAGGGAGAGGAAGATGATGGAGCTGAGAAATCTGCGATTACTCCTTCCTGGCCTTTTGCTCTTATTCGCGCTGCATCGCTGCTCATCACgaccATGTTTAGATCCAATTATCTCACCACTCTATGCCTCCTCTTTCTGGGCCTCCTCCAGATACAATTTTCTCTACTCTGCTCATTTTGCCAAACTTCATGggagcAGTGGCTGGTCTCCGGCCCCCGGAGACACACAGCCGTGGCTGCAGATCAATCTTGGTAGAAAGTATCGCATCGTCGCAATTGCCACACAGGGTACCTTCAACTCCTACGACTGGGTGACGAAGTACACACTCCTCTATGGAGACCGTTTTGATGCATGGACTCCTTATGTCATGAAAGGTGGCAACATGaCATTGCCTGGAAACTGGAACTACTACCAGGTGAAGAGGAATGTCTTTCACTATGCCTTTACTGCTAAACACCTGCGCCTCCTGCCTATGGGCTGGAACACAGAAAACGGTGGAAAAATTGGTGTACGGCTCGAGGTCTATGGCTGTCCCTATGACTCATACGTGATGCATTGAGGGGACGACATGGTGGCCTACTCATTACCCGGTGGGAGACTAAGAACCTTGCAGGACCACTACGCTTTGAACTTTAAGACGCTTGAGAAAGATGGCGTGCTGCTGTACAGTGAGGGCATCCAGGGAGATTCGGTCTTGCTAGAGCTGAAGACTGGACGACTCTACCTGCATATGTCCCTGGGAAGCAGTACAGTGCATAACATGGATGGAATGACCACAGTGAGGCTGGGAAATGTACTAGACACACAGCATTGGCACTATGTCACCATCAAACGTTATGGCCGAGACCTCAACTTCACGTTagacagccagacagagagagtcCTCCTCAATGGCGAGTTTAACTATCTGGATCTGGACAACCAGATATATGTAGGTGGTGTGATTGAGAAAGACTCACCTCACCTCCCAGGTAAGGTCAACTTCCGGGGCTGCTTGGAGAACGTCTTCATCAATGGAATCAACATCATTTACAAGACCCAATACAAAGATCCTGATGTACGGTTCGCTCCCAAAAAGAAAAAGATGCACTACACATGCCGTGACCTCCTTTGGAGACCCATGACCTTTGCAGGGCCCAACAACTACCTCCAGGTGCCTGGGTTCTTTCGAAAGAACCGACTGGCAGTGAAGTTCAAGTTCCGTTCTTGGGACTACACAGGATTGTTGATGTTCACCAGATTTGCTGATGATTTGGGCTCTCTGGAGCTTGGATTGAGTGAGGGTCAAGTCAACATCACGCTCACACAGCCAGGGAACAAGAGACTCCGCTTTGCTGCAGGATATCGTTTAAATGATGGTTTCTGGCACACGGTGGATCTGGCCGCCAGAGACAACTTGCTCTCAGTCACGATTGACGAGGACGAGAGCTCTCCATTGAAGATCACCAACCCATTCATGGTTCGCACTGGAAACACCTACTTCTTTGGAGGCTGTCCTAAGACCAACAATACGGCACGCTGTGTGACCAAGCTGGCGCGCTTCCACGGCTGCATGCAGCAGATCTTTATTGATGACGAGCCTGTGGACATCGACGTGATGCTGCAGAGGAAATGGGGCCGATACACAGAACTACTGCTGGGGACATGTGGTATCactgacagGTGCTCTCCAAACCCATGTGAACACGAGGGCAGGTGTATTCAGTCCTGGAATGACTTCCTGTGTGTTTGCaacaacacaggctacaaagGGGAAGTGTGCCACAACTCCGTCTATAGGGAGTCGTGTGAGGCCTACAGACTGAATGGAAAGTATTGGTCAGGCAATTACACCATAGACCCGGACCTGAGCGGCCCGCTCAAGCCTTTCACTGTCTACTGCAAGATGAAGTTGAACAAAGCCTGGACGATTATTGAGCACAACCGTCTCGAGAGAACCAAAGTGACCGGCTCTAGCTTGGATCGGCCTTATATAGGGGACGTCCAGTACGTGAACGCCTCGTGGGACGAGGCCACTGCTTTAGCCAACACGTCGCTATATTGTGAACAGTGGATCGAGTTCTCGTGTTACAAGTCCCGCCTTCTAAACACTCCACATGGACGGCCTTATACTTTTTGGATTGGTCGGCATAACGAGAGTCACGAATACTGGGGCGGGTCTTTCTCAGAGAGTGGGAAATGCGGCTGTGCCATCAATCAAACCTGCACCGACTCCAAGTTCTGGTGCAACTGCGATGCTGATTATCGCCaatgGTATTCAGATAAGGGCTACCTGATGTTCCGGGACCATCTGCCTGTCAGGAAGGTTGTAATCGGCGACACAAACCGCCCCGGCTCAGAGGCCCAGTTCAGCATCGGACCACTGCGCTGTTCTGGAGACAGGAGTATCTGGAATACTGTAGCCATTACCAAGCCCACCTATATGACCTTCCCCACCTTTAAACCTGGTATCAGCGCTGACATCACCTTCCACTTCAAGACCTACCGCACCAACGGGGTCTTCCTGGAAAACTCAGATGACCATCTGCGCAACTTCATCAGGATCGAGCTGAACTcCACTACCGAGGTGGTGTTCATCTTCATGGTAGGTGACGGGATTAGGAACGTGACCCTGCGCACCACCAAACCTCTCAACGATAACGAGTGGCACTACGTGGAGGCTGAGATCAATGTCAAAATGGCACGGCTCAAAGTGGACTTCTATCCTCCTGCTATCCACAAGTTCCCCGGCCAAACCTACATCACCATGCAGTTCACTCAACCCCTGCTCGTAGGTGCTGCAAATCACACTCTAAGGCCATTCTTGGGTTGCCTGCGTGGCCTGCGAATGAACGGCGTCCCTTTGGATCTGGAGGGGAAGGTAGACGAGCGCACTGGGATCCGGAGGAACTGCACAGGAGCTTGTCTTAACGCCTCCATCCCCTGCAGGAACGGAGGGCAGTGCATCGATGGCTACGCCTCGTACACCTGCGACTGCAACAACACGGCCTTCGACGGTTATTACTGCCATTTAGATATAGGAGCGTTCTTTGACGTTGGTGCTTGGCTGCGGTACGACATCCGTAAAGAGCCCATTTCAGAGGACGCCTGGTGGGCTAACTTCTGGATCGAACCACACTGGCACAACTTCACACTGGGCTACAACACCACCACCGATGACATCGAGTTCAGCTTCAGCACCCAGCAGACTCCAGCTGTCCTGCTGTACATCAGCTCCTTCCACAAAGACTACATCGCTGTGCTGCTCAAGAAAGAtgGTACCCTCTCCTTGAGGTATCGTCTGGGATTATTAACACATAAATTTCAGCTGACCACCAGGAACCTGGCTGACGGCTTCCCTCACTTTGTCAACATCACCAGGCACAACTACACCGTATGGACCCAGGTGGATTACATGGAGCCGTGGGTGGAGAGATTAACTCTCGGGGAGATTCCCAGATTTGACTCACCGAAGAGTATCTTTCTTGGCCGTGTCATGGAGGTTGGCGATATTGATTATGACATTCAGAGACACAACAGTCCGGGTTTGGTGGGCTGCATATCGGGGGTCCGTTACAACATCTTCGCACCACTGAAGGCGTATTTCCGGCCCAACGTCACCAACCCACCCATCACCACCCAGGGCTACGTGGTGGAGTCTAACTGTGGTGCAGTCCCTCCTGTCTTAGGCTACGTGCCCTGGGAGGACGACCCCTGGTTCACTGGACTATTCTTCTATTATATTCACGATGACGTGACTCCACCCTGGATGACGTTGATCGTCACCGTGTCTCTGATGCTGCTCTTCCTCATGCTGTACGGCATGTACATTTACCTGTACAAATATAAAGGCAGCTATCATACGAACGAGCCGAAAAACTTGGAGTCGCCAAGTTCCGCGCGTCCTCTCACCGAAACCCTGCGCAAAGACAAGAAGAACCTGCCGGAAATCCAAGAGGAGGCGACGGGTGAATAACATCTTGAGAGAAACAGGGTCTGGGGGGTTGGAAGGAGGGGTGGGACACACAAGGTGAGCGAAACGTAGGGAACAGGAAATGATGAAACAGTTGGATGAAACGGGTGAAGTTGTGATTATAGAACATGCCTATATTTTTGCttgatatttttcatttatattgtgtatttgttttttctgcCCCCGGTGTTAATTGGTGGTAATTGGGTCTTAATTTGACATCTGGTGCTTTTTGGCTAAACATTTGCAGGGTTCAGATCTGTGTCCCACAATGCAATGCTGGCCAAAGTAAGTGCCTCAGGAATCCGAACATTTAGAAAGAACCAACAGGCTTGTGTGTGTCaacagtgtttgtgttatatttaagaaatccaaatttct

Function

symbol description
cntnap1 Predicted to enable calcium ion binding activity. Predicted to act upstream of or within paranodal junction assembly. Predicted to be located in membrane; paranodal junction; and paranode region of axon. Predicted to be integral component of membrane. Is expressed in posterior lateral line nerve. Human ortholog(s) of this gene implicated in lethal congenital contracture syndrome. Orthologous to human CNTNAP1 (contactin associated protein 1).

NR:

description
PREDICTED: contactin-associated protein 1

GO: NA

KEGG:

id description
K07379 CNTNAP1; contactin associated protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026916962.2 True 4498 mRNA 0.51 25 4563378 4590665

Neighbor

gene id symbol gene type direction distance location
ramp2 ramp2 coding downstream 48741 4498898 ~ 4514637 (-)
LOC113527979 c1ql1,LOC102227234,LOC103393155,LOC107729572,LOC101070426,LOC104923905,LOC103367899 coding downstream 168849 4359299 ~ 4394529 (-)
ccdc43 ccdc43 coding downstream 329415 4227165 ~ 4233963 (-)
fzd2 fzd2,LOC107583044,LOC107729561,LOC107658461,LOC107721960,LOC107564008,LOC107674136 coding downstream 349645 4211229 ~ 4213733 (-)
mylk5 LOC108256285 coding downstream 370787 4152059 ~ 4192591 (-)
tubg1 tubg1,LOC107721485 coding upstream 81090 4671755 ~ 4690497 (-)
si:ch211-278a6.1 srcin1 coding upstream 183014 4773679 ~ 4935981 (-)
arf2a arf2a,arf2b,LOC103045652,LOC108427419,LOC105013206,LOC107554546 coding upstream 361431 4952096 ~ 4965626 (-)
gpatch8 gpatch8 coding upstream 424902 5015567 ~ 5048818 (-)
baxa bax coding upstream 490923 5081588 ~ 5087023 (-)
G205484 NA non-coding downstream 2956 4553297 ~ 4560422 (-)
G205481 NA non-coding downstream 11510 4549561 ~ 4551868 (-)
G205293 NA non-coding downstream 48240 4514936 ~ 4515138 (-)
G205291 NA non-coding downstream 55666 4505198 ~ 4507712 (-)
G205269 NA non-coding downstream 166077 4397073 ~ 4397301 (-)
G205488 NA non-coding upstream 108535 4699200 ~ 4700963 (-)
G205541 fmnl1a,LOC108278868,LOC107720013,LOC107721528,LOC107654518,LOC107590427,LOC107688135 non-coding upstream 176072 4766737 ~ 4770844 (-)
G205558 NA non-coding upstream 237588 4828253 ~ 4828546 (-)
G205628 NA non-coding upstream 466245 5056910 ~ 5057116 (-)
LOC113528378 NA non-coding upstream 690065 5280730 ~ 5284905 (-)
dcaf7 dcaf7,LOC100702343,LOC105030232 other downstream 445735 4092913 ~ 4117643 (-)
G205173 gfap,LOC103392664 other downstream 518803 4040481 ~ 4044575 (-)
kcnc3a kcnc3a,LOC108259249,LOC107729449,LOC108427388,LOC107693499,LOC107548332,LOC105891716 other downstream 697529 3768855 ~ 3865849 (-)
nde1 nde1 other downstream 1149611 3382831 ~ 3413767 (-)
si:dkey-283b1.7 LOC108276203,LOC107737768,LOC104929916,LOC106607185 other downstream 1485360 3073977 ~ 3078018 (-)
mlx mlx,LOC107721525,LOC107601295,LOC107720011,LOC107590371,LOC107654516,LOC107688133,LOC106601136 other upstream 131752 4722417 ~ 4734902 (-)
G205633 rps11,LOC102786880,LOC107674708 other upstream 498671 5089336 ~ 5091922 (-)
G206236 NA other upstream 1164102 5754767 ~ 5756733 (-)
G206282 NA other upstream 1250472 5841137 ~ 5841477 (-)
retsat LOC108257121,LOC108432054 other upstream 1350197 5940862 ~ 5950997 (-)

Expression


Co-expression Network