casc3 (casc3)


Basic Information

Item Value
gene id casc3
gene name casc3
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 9917962 ~ 9926203 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026916963.2
TCCTTGCGCACTTCCGGTTCCCCTTCCTTGTGTGCTAAGATGGCGGACCGGCGACGACGAAGGAGGCGCGCGTCTCAGGACAGCGAGGATGAGGACGAGTCTGCGTCCGGGTCGGAGAGCGGGAGATCGGCTTCCCCCAGCGGGAAGAGCCGCGCTAGAATCCCCGAGCCGGGAGAGTCTCCAGCCGCGCGCGTTGGCGCGAAAAGCGACGTCGAATccgagtgtGAAAGTGAAGATGGTGTAGGTGAAGCTGTCCTTTCTGACTACGACAGTGCTGATCCGGAGGAGAACGGCTCGCACTCGGAGGGAGgagaggacgaggaggaggagggtgaaCACTTCAGTGATGACGACGCTGCTCGCCCAGCCGCAGAACAGAAAGCAACAGCCGATGTTCCTGCTGAAGGTttgggagaggaggaggaagaggaagaagaagaagaggaggaggagagagacatAAAAGAAGTGAAAGCTGATGAAAAGGGCAACTTGGCAGGGGAGAGGCAGAGTGGAGATGGTCAGGAGAGCACAGATGATCCTGAGAACAAGTCAGCTAGTAAAGCTGGTCAGAAGTTGGATGATGATGAAGACCGGAAGAATCCAGCATATATCCCCCGGAAGGGCCTGTTTTTTGAGCATGATGTGAGAGGCCAGGCTCAGGATGAAGAGAGGCCTAAGGGCAGACATAGGAAGTTATGGAAAGATGAGGGTCGCTGGGAGCACGATAAGTTCCGGGAGGAGGAACAGGCCCCTAAATCACGCGAGGAGCTGATTGCTGTTTACGGTTACGACATTCGTAACGGCAATGGCCCCAGTGACACCAGACCATTCAAGCCACGAAAGCCCAGGCATCCTGGCCCGCTAAACCAAGAGTCCAAGCGTTACAGGGATGGTGAGAAGCCCCCCCGCTCCTCATGGCATGGTGCGGCTCCCAGTGCCCGTGGTGCCCCCCTTGTGACAGTAACTTCCCAGTCAGGTGTTCCTGCTGCTCCTCGCCCCCAGAATAGGCCCTCTACCCAGCCCCCTGCACGCACCTTCCAGAGCAGCCGTCGGCCTGAAATCAGAAGTCATCCTAAGGCCACCACGCGACCCCAGGCTCCTGAGAGTGAGAGGGCACCCAGGCTCAGGGGCCGAGGTTCTCATGGACCATCTCACCATGCCCAGCGCAGCCCACAAGAGGATGACGAAGAGGAAGGCGAGATTCCCACTGTAGCCACCACTTACACTGCCCATTATTACAAAACTGAACAGGAGACAACCTCTTCATCGCAGCAAAAGGAGGAGTGTGGAACAATGGAGGAGCAGCAGTCGAGCACACCTGGCACAGTAAGAGAGGTGTCACCACCTCCTGAGAGGCCAGTGGAGAAAAAATCCTACTCTCTGGCACGTAGGAGCCGAGCCAGGCCCTTGGACCTTAGCAAGCAGGCCTCTCTGGAAGAGGCAGTGATCACCCCACAGGTTATGCCCACTGCTGCCAAGACTGAATCATGGCAGGGACAGGGTGAGACGGGCACACAGAGTGGCCTGTCAAGGCTCGATCAGGATCTGGCTCGTCTCAATCTGGCTGGGCAAAACTGGACCCAGAGTCCAACCTCATACCTCCGGCCTGAGATGAGGGGCATCCCTAGTTCTATACATATGGGAGGTGGTCCTCCTCAATATGGCAATATGGAGGACATGGGTGTTGGTGGTGGCCGGGCTAAGCGGTATTCGTCTCAGAGGCAGAGGCCAGTGCCTGAACCAGCGCCAATGCACATAGGGCTCATGGAGGGCCACTATTACGAACCCATGTCATTCCAAGGACCAATCTACACACATGGCGACAGTCCTGCTCCCATGCCACCACAGGGGCTGTTGGTACAACCAGAGATGCACCTGCCCCACCCCACGCACCCCGGCTTGCATCCACACCAGTCAGGAGGACCGATTCCGAACGCTGCGCTTTACGCTGCTCCACCCGTTTCTTTGTCTCCTGGACAGCCACCCCCACAGCAACTGCTAGCCCCACCCTTCTACCCTCCACCTGGAGTCATGACATTTAGCAACACCAACTACCCTTACCCTGCTGGAGCTACACTACCCCCCATGTACCCCAATGCACAGGCTCAGTCACAGGTGTATGGTGGAGTGACGTATTTTGACACAGTACAGCAGCAGGCTCAACCCAAACCTTCTCCACCACGCCGCACTTCACAGCCAGTCACAGTCAAACCTCCCCCACCAGAGGACCAGAGCAGGAAGCCCAGTGAGGAGGTGCGCTCCTAGCTGCTGCTGAAAGAAGTGACCAGGACCAGCACCACTTGTGGATGAATATATTTTCGCTTTGTtacatcacctttttttttcttttctttttttttttttttaaaggaaaaacttgcaatgtttgattttattcattttgttaagCATGTCCACATTTACCTTCATGCAAGGCCCTCCTCGCGAGTCATGTCTCGATTGTATTTTTCATCACCTGATCTGTTTGCAGTGTACTGCTTCACTCTCTCATCAAAGCATGTATTAGTTCCTGAAGGAAATGTACTGTAAAATATACGTCAAGCCGGCACAGAAAGAGGTTTCGCTGCTATTAATCACTATCATAATCATTATCAATAAATGTCACGTTGTACTAATAA

Function

symbol description
casc3 Predicted to enable RNA binding activity. Predicted to be involved in mRNA splicing, via spliceosome. Predicted to act upstream of or within RNA metabolic process; mRNA transport; and regulation of translation. Predicted to be located in nucleus. Predicted to be part of U2-type catalytic step 1 spliceosome and exon-exon junction complex. Orthologous to human CASC3 (CASC3 exon junction complex subunit).

NR:

description
PREDICTED: protein CASC3-like

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0006396 RNA processing biological_process
GO:0006810 transport biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K14323 CASC3, MLN51; protein CASC3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026916963.2 True 2642 mRNA 0.54 13 9917962 9926203

Neighbor

gene id symbol gene type direction distance location
msl1a msl1 coding upstream 861 9912768 ~ 9917101 (+)
si:dkey-225f5.4 LOC108258433 coding upstream 24466 9886784 ~ 9893496 (+)
igf2bp1 igf2bp1,LOC108412303,LOC107717213,LOC107667758,LOC107582884,LOC106607494 coding upstream 38077 9840890 ~ 9879885 (+)
ube2z ube2z coding upstream 90953 9814084 ~ 9827009 (+)
atp5mc1 atp5g1,LOC108256653,LOC108413019,LOC107740625,LOC107662391,LOC107585044,LOC107582887 coding upstream 106381 9806798 ~ 9811581 (+)
LOC113528352 snu13,snu13b,LOC103040872,LOC101154660,LOC105910236 coding downstream 266601 10192804 ~ 10195206 (+)
LOC113528384 slc25a17,LOC108412891,LOC106601749,LOC107666095,LOC107743042,LOC107548713 coding downstream 288842 10215045 ~ 10222874 (+)
helz helz,LOC107691233,LOC107665819 coding downstream 372684 10298887 ~ 10341715 (+)
lmtk2 lmtk2 coding downstream 499856 10426059 ~ 10448685 (+)
bri3 bri3 coding downstream 549151 10475354 ~ 10484206 (+)
G208504 NA non-coding upstream 34835 9864977 ~ 9883127 (+)
G208507 NA non-coding upstream 59080 9846084 ~ 9858882 (+)
G208472 NA non-coding upstream 169952 9746285 ~ 9748010 (+)
G208415 hoxb9,hoxb9a,LOC107662432,LOC107585091 non-coding upstream 179096 9737009 ~ 9738866 (+)
G208430 NA non-coding upstream 183915 9732608 ~ 9734047 (+)
G208488 col1a1a,LOC108279263,LOC107585052,LOC107740634 non-coding downstream 113206 10039409 ~ 10061965 (+)
G208700 NA non-coding downstream 295080 10221283 ~ 10221539 (+)
G208701 dxo,LOC107752708,LOC107666098,LOC107691245,LOC107743041 non-coding downstream 299380 10225583 ~ 10226503 (+)
G208783 NA non-coding downstream 415705 10341908 ~ 10342224 (+)
G208911 NA non-coding downstream 900822 10827025 ~ 10828913 (+)
nupr1b nupr1,LOC108413333,LOC107660958,LOC107739393,LOC107567154,LOC100692788,LOC103393451 other upstream 854549 9061563 ~ 9063413 (+)
asphd1 asphd1,LOC107568490,LOC107755186,LOC107552472,LOC107739384 other upstream 959862 8950466 ~ 8958100 (+)
trnas-cga_1 NA other upstream 1909551 8008186 ~ 8008411 (+)
G207480 LOC107834952 other upstream 2064453 7853191 ~ 7853509 (+)
spsb3a spsb3,spsb3a,LOC107689049 other upstream 2595997 7309207 ~ 7321965 (+)
rapgefl1 rapgefl1,LOC107717207,LOC107662398,LOC107740631,LOC107667751,LOC107585050,LOC106600822 other downstream 18103 9944306 ~ 9987773 (+)
G208781 cacng4b,LOC108259704,LOC106606650,LOC107565862,LOC107691234,LOC106601773,LOC107724746,LOC107713946 other downstream 423199 10349402 ~ 10781459 (+)
cdc42ep4a LOC108256079,LOC108432235,LOC103033379 other downstream 1353877 11280080 ~ 11388020 (+)
luc7l3 luc7l3,LOC107674472,LOC107726809,LOC107654661 other downstream 1640916 11567119 ~ 11577823 (+)
tbc1d16 tbc1d16,LOC107559246,LOC107689993,LOC107670685,LOC107562324 other downstream 2123204 12049407 ~ 12086058 (+)

Expression


Co-expression Network