kat2a (kat2a,LOC107755568,LOC107729177,LOC107690294,LOC107687008)


Basic Information

Item Value
gene id kat2a
gene name kat2a,LOC107755568,LOC107729177,LOC107690294,LOC107687008
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 6468354 ~ 6481284 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026916972.2
GGTGCGCATGCGCAGCGTGACTATTGTATCTCGTGGAGACAGGCGCGAGCGAGGCCTGAAATAAACATCAAAGGAAGTTAATTAACGTGCGCGCGTGCAGCGGGAGGCGAGCGGGACACAGCGCGCGGGCTCGGCGGAGAGGAGAAACACGGCGCTGAGATGGCGGAGGCAGCGGCGCAAGCGTCCTCACAAGCCCGGCTTCAGCAAGGCCAGAGCGGGGGGTCGGCGGGCTCAGGCTCGGGCTCCGGAAGCAGCGACCCGGCGCGGCCCGGTCTGAGCCAGCAGCAGTGGGCGAGTCAGAAAAAGGCGCAAGTCCGCGCTTTCCCTCGGGCTAAGAAGCTTGAGAAGCTCGGAGTGTTTTCGGCTTGCAAGGCCAACGATTCCTGTAAGTGTAATGGCTGGAAGAACCCTCATCCACCGACGGCCACCCGGATGGAGCTCCAGCAGCAGGCGGCTGATTTGAGCGAGGCCTGCCGCAGCTGTGGTCACGCCCTCGcgGAGCATGTGTCTCACCTAGAGAATGTCTCAGAGGACGAGATTAACAGGCTGCTCGGGATGGTGGTGGATGTAGAAAACCTCTTCATGTCTGTGCACAAGGAAGAGGACACAGACACCAAGCAGGTCTACTTCTATCTGTTTAAGCTGTTGAGGAAGTGCATACTCCAAATGGGCAAGCCAGTAGTGGAGGGTTCACTAGGAAGTCCACCGTTCGAGAAACCTAACATAGAGCAGggggtGTTAAACTTTGTGCAGTATAAGTTCAGTCACTTGGCTCCTAAGGAGAGACAGACGATGTATGAGCTGAGTAAGATGTTTCTGTTGTGTCTGAACTACTGGAAGCTGGAAACGCCGTCTCAGTTCCGTCAGCGCGCCCAGAAAGAGGACGCATCTGCCTACAAAGTCGACTataccagGTGGTTGTGCTACTGTCACGTGCCGCAGAGTAACGACAGTCTGCCTCGCTATGAGACGTGTCAGGTGTTCGGCCGCAGTCTGCTCAAGTCTATCTTCACAGTCACCCGCAGGCAGCTGCTAGAGAAGTTCAGAGTAGAGAAAGACAAACTGCCCCCAGAGAAACGCACGCTTATTCTCACACATTTTCCCAAgtttcTTTCCATGCTGGAAGAAGAAATCTATGGTGAGAACTCTCCTATATGGGATGCTGAATTCACCATGCCAGCTAATGAGGGAGCCCAACTGGGGCCTCAGACAGTGTTGAGTCCAGTAGCAGTTTCTGGTTCTCCTCTGCGTAAAGGCGCTGGTGGCTCTGCTCTGGACACAGCCTCCTCCGAGCCCGTCACaggagagaagaggaagttACCAGAAGCTCTGACGTTGGAGGATGCTAAGCGGATCAGGGTGATGGGCGATATCCCTATGGAACTAGTCAACGAGGTCATGATGACGATCACTGACCCTGCTGCCATGCTGGGTCCAGAGACAAGTCTCCTGTCTGCAAATGCAGCGCGAGATGAGACGGCACGtctggaggagaggagaggcaTTATAGAGTTCCACGTGATCGGTAACTCACTCTCTCAGAAGTCCAACAAGAAGATCCTGATGTGGCTGGTGGGCCTGCAGAACGTCTTCTCCCATCAGCTGCCCCGCATGCCCAAAGAGTACATCACACGCCTTGTCTTTGACCCGAAGCACAAGACTCTGGCTCTGATTAAAGATGGCCGTGTGATTGGTGGGATTTGTTTCCGAATGTTTCCCACTCAGGGATTCACTGAGATTGTTTTCTGTGCTGTTACTTCAAACGAGCAAGTGAAGGGCTATGGCACTCACCTGATGAATCACCTGAAGGAGTATCACATCAAGCATGGCATTCTTTACTTCCTGACTTACGCTGACGAGTATGCCATCGGTTACTTCAAAAAACAgGGCTTCTCCAAAGACATCAAAGTGCCAAAGAGTCGCTACCTTGGCTACATTAAAGACTACGAAGGGGCCACACTGATGGAATGTGAGCTCAATCCCAGAATCCCCTACACAGAGCTGTCACACATCATCAAAAGGCAGAAAGAGATTATCAAGAAGCTGATTGAGAGGAAGCAGAGCCAAATCCGGAAGGTGTACCCCGGCCTCACCTGCTTCAAAGAGGGAGTCCGACAGATACCTGTGGAGAGCATTCCAGGCATTAGAGAAACAGGTTGGAAACCCAGCACCAAAGAGAAAAAcaaagAACTGAAGGATCCTGACCTTCTGTACAACATACTGAAAAATCTTCTGGCCCAGATTAAAacaCACCCAGACGCTTGGCCTTTCATGGAGCCTGTGAAGAAATCTGAAGCTCCAGACTACTACGAGATCATCAGATTCCCTATTGACCTAAAGACCATGACAGAGCGGCTGAAGAACCGCTACTACGTGACCAAGAAGTTATTCATCGCCGACCTGCAGAGAGTGATCACCAACTGCAGGGAGTACAACCCGCCTGACAGCGAGTACTGCAAGTGCGCCAACACGCTCGAGAAGTTCTTCTACTTCAAACTGAAAGAGAGTGGCCTCATCGACAAGTGACCCAGCACACAGGTGGTGGCATTTAAAGGGACAGGACACGTACGGCAGACAACACCACAAACTCCCACTCATGTAAAGACATACAAGATGGAACAatctgagatgtgtgtgaggaagaagAGGCGTGAGTTCACGAGGCATTAGAGAAAGCAAGGAGGGTAAAATGAACCTCTGGTTGGGTTCAGCGTTAATTCAGCAGGGGACTAAATGTTTTGGAcgttattattttttctgtttggttttggcacattatatatacacactgttaaGAGAACATTACATGTCTAATAATACTGATTAAGCCCATTCATATCAATACTCCATCAtaacattttataccacagcactgctgaatgctcaattctgattggtcggaaggtattgattaattttctacatcagcagctctgacaacagttcccgctgcaaggtttatattaatgcacttgttctaatacgtttatcgtttctatatatataatgtacacaAGGACTTGTTCAGAGgacactccacacagactgatttaaaaaaaaaaacatgtaattattaAGATGGTGacttttctgtgagaagatgtAAAggtagcatttttggaaggcgtcaccagtgtcagtgctttgtaacagccagaggtaaagctgtaacttctaAGTTTTGAGACATGGGAGaattcaggacagagggctgtataacatgacaagctgcgctTTATTTTGGGTCTTATTTACTtcaggagaggaaaaaagagagaggctggtgagggaacgactgcttatagctgctattataactgtttataatgtacattataacaggaactaacttgtttattGGACCTTCCACAATATTACACATAAGTACATATGGATAAAGAAAAGTACATAttccataataaataaaaaaaaaatttagaaattGCTGTgatctaaggaataaaacactttgaggtGCGtggttaatggaaaataataaacatatggAGTGGTAACAGTCACTCCACATTGTATTGGCCCACATctcaccaccccatcattgattattttcctttaacagcatgtccagaactgttttattccttacatgggCTACTTTACTGCCCACTGATTAAGCTTTCTTTTGGATTGTGTAACAGTCACAACAGTTTTCCTCTCTAAATAATTAGATAAATGCCGTCTAAATCTGCATATATGCTACGGATCCAGAGTTTACTCAGTAGATGGTTACACTGACTGCTCATCCTTGCCATATTTAGTGTATACAGAGCCAAAACTGGTCCACTGGAGCCTGGAGTGGCTTGATATCCTCATTTCTTATCTATTTTTCTTAAAACAGTAAAACTGGTATCACCGTTAACAATGCATACTGCTCCTGGAGGAGTCAAGGCCAGTTCACAATCTCAGTGATCTgttttaatctgtattaattGTCTTCTGTTTTGGAATCTTATCATATCAgggtttcttttattattattattattattattattattctttgcATTCCCATATGTGCCATTCTTCCAGTGAATCCATATGGAAACCACACTTAGGGCTTCTTGCCCACGTCATTGAACTACTGTAGTTCTTCTCTGGACTGTAAGGTCATGGCAACTGGTTTTTTACTACAGGCATCGATTCAGATTTAATTTTCAATATCAGAGCTCTGAGTATTGACTAATATTCTCTGCCATTCTGATGTAATTGAGCTGACTCTATAAAAAAATCGCAGGCATGATAGCAGCATGCTTTACAGCAGTTTGTGCTCTGTGTTTATGTGCCACATCTGTGTTTGCCAgactacaaaataaatgttcatgtcctaaaatgtcagtttatcagatattaatatattaatacttaGCATCAGATCAGCGCATCCTGGGTTAGCACCTCTGGTCATTTGCAAGTATAAGCCATATTTATCACTGCAATATTTCTTCAGTGCTTTGAGAGTTCATGATGTCATGCCAGTATCCACTGTAATTCCGTAAGCTGATTTTTACTCAGTATCTGTGCCAGGTATCTGAATTTTCTTTTATAAGCTCATCTTCTGTTTTAAGCATGATTTCTGTGGGAGGAAAACGGTCACAAAAAAGCTCCCAGATATCAGTATACACTGTTCTGGACACTGTATCTGTAACCTGGATTACTTTCATTAAAGTGTCTGTTGAATGGTTATAACACGGATTAATACACACCCTATGTACCTGTTTGTGCCTGTTCCGATGTTGCATGATCTCAGCAACTTTACTATTTGCATTAAAGAAAGAAGCTCATGACATTACCTGACGATTTTTGTTCTGAGGAGTTTTGCACAGTGCTTTTGAAATTATAAGTGGGTGGTTCTTCACTGTAATGTCACCCACCCTCCCGCCCCGTTGGTTACATACTTGAATCAGACTTGGTGTAATGCAGTGTTCATATcaggcattttattttattttatttttaaagttctaCAAGTCCTGTATAAtgataaagtgtaaaaaaaaaaaaaaa

Function

symbol description
kat2a Predicted to enable N-acyltransferase activity; chromatin binding activity; and transcription coactivator activity. Involved in histone acetylation; regulation of bone development; and regulation of cartilage development. Acts upstream of or within bone morphogenesis; heart development; and limb development. Predicted to be located in centrosome and nucleus. Predicted to be part of histone acetyltransferase complex. Is expressed in brain; fin; head; heart; and otic vesicle. Orthologous to human KAT2A (lysine acetyltransferase 2A).

NR:

description
PREDICTED: histone acetyltransferase KAT2A-like isoform X1

GO: NA

KEGG:

id description
K06062 PCAF, KAT2, GCN5; histone acetyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026916972.2 True 5025 mRNA 0.45 18 6468354 6481284

Neighbor

gene id symbol gene type direction distance location
dhx58 dhx58 coding downstream 457 6461123 ~ 6467897 (-)
znf385c znf385c coding downstream 25072 6350664 ~ 6443282 (-)
dnajc7 dnajc7,LOC107687006,LOC107690290,LOC107755572,LOC107729181 coding downstream 127123 6323202 ~ 6341231 (-)
ttc25 ttc25 coding downstream 145227 6315299 ~ 6323127 (-)
cnp cnp coding downstream 155546 6307670 ~ 6312808 (-)
rab5c rab5c,LOC104958098 coding upstream 2387 6483671 ~ 6501470 (-)
kcnh4a kcnh4,LOC107568301 coding upstream 25420 6506704 ~ 6548501 (-)
hcrt hcrt coding upstream 69257 6550541 ~ 6555884 (-)
si:ch211-210g13.5 si:ch211-210g13.5,LOC108256246,LOC108441607,LOC107729192,LOC107687011,LOC103359488 coding upstream 75854 6557138 ~ 6632345 (-)
stat3 stat3 coding upstream 252833 6734117 ~ 6764914 (-)
G206649 NA non-coding downstream 121991 6273816 ~ 6346363 (-)
G206628 NA non-coding downstream 264158 6203312 ~ 6204196 (-)
LOC113527891 NA non-coding downstream 278428 6187474 ~ 6189926 (-)
LOC113528476 NA non-coding downstream 514850 5952798 ~ 5953504 (-)
G206210 NA non-coding downstream 740674 5721634 ~ 5727680 (-)
G206924 NA non-coding upstream 343612 6824896 ~ 6825760 (-)
G206923 NA non-coding upstream 345084 6826368 ~ 6828146 (-)
G207057 NA non-coding upstream 620964 7102248 ~ 7102389 (-)
G207198 NA non-coding upstream 695248 7176532 ~ 7176755 (-)
G207221 NA non-coding upstream 746101 7227385 ~ 7227664 (-)
G206604 NA other downstream 273358 6126910 ~ 6194996 (-)
LOC113528542 NA other downstream 507304 5953733 ~ 5961050 (-)
retsat LOC108257121,LOC108432054 other downstream 517357 5940862 ~ 5950997 (-)
G206282 NA other downstream 626877 5841137 ~ 5841477 (-)
G206236 NA other downstream 711621 5754767 ~ 5756733 (-)
stat5a sta5b,stat5,LOC108279147,LOC108444239,LOC105013349 other upstream 164774 6646058 ~ 6726165 (-)
G207231 spsb3 other upstream 837319 7318603 ~ 7321962 (-)
natd1 natd1,LOC107661164,LOC107568532,LOC107689058 other upstream 944433 7425717 ~ 7431112 (-)
crhr1 crhr1,LOC108261365,LOC107662410,LOC108413653 other upstream 1078483 7559767 ~ 7705492 (-)
slc4a1a LOC108279353 other upstream 1768601 8249885 ~ 8267638 (-)

Expression


Co-expression Network