alyref (alyref)


Basic Information

Item Value
gene id alyref
gene name alyref
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 13986722 ~ 13989892 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026916983.2
GTTTTCCTGCACTGAAAAACATTCAGGTTAGGGGCAGAGTAGCTGTTTACCTGGtgtttctccttcttcttctttttttttttcttttagtcaGCAGCCGCGTTAGCATTAAGCAGGTTAAACAATGGTAGACAAGATGGATATGTCGTTGGACGACATCATCAAGCAGAATAAGCAGCAGAGGGGAGGCGCGGGCGGCCGCGGTGGGAGAGGTGGCCGAGGCCGAGGCGGCGCAGGCGGCGGCCGCGGTGCAGGAGGCGCCGGGCGACTGGGAGCTAACGCGGGCGGAAGCTTTGGAGGCCGCGGCGGAGGCTCAGGCCCCATGAGGAATCGTCAGAGCCTGAACCGTGGCAGAAGCAGACCCACGCCGTACAGCAGGCCCAAGCAGCTCCCTGACAAGTGGCAGCATGACCTGTTTGACAACGGCTACAGCACCAATTCTGGAGGAggcggtggtggtggtggaggagcgGGCGTGGAAACCGGAGGGAAGCTGCTTGTATCCAATCTTGACTTTGGTGTCTCCGATGCAGACATTCAGGAGCTTTTCGCGGAATTTGGCACCTTAAAGAAAGCTGCGGTTCATTATGACCGGTCCGGGCGCAGTCTTGGCACAGCAGATGTCCACTTCGAGAGGAAAGCAGATGCTTTGAAAGCCATGAAGCAATACAATGGTGTTCCTCTTGATGTCATCGATTCTGTTCCAGGTCGTCCAATGAACATTCAGCTAGTCACATCACAGATTGACGCACAGAGACGAGCTCCAATGCAGGGtcTGAGTCGTGGTGGTGGAGGCATGAACAGGAACAAGATGGGGAGCTTTGGAGGCATGCAGAGAGGACGGGGAGGTCGGGGAGGTGGAGGGCTCAGAGGCCGTGGCAGAGGGGGAAGGGGCAATAACAAACAGCAGCTTTCAGCAGAAGAATTGGATGCCCAGCTAGATGCCTACAATGCCAGGATGGACACCAGCTAAATGGCCTGATCTGTTCGAGCTACACTCTTCTCTCTTGGCAGCATCGTAGGGTGGTTGTTACCGCTTTGAAATGCCGGacgttttacatttacatgtctTCAGAAGTGATTTAAATTTGTGTACCAGTTTTCTCCTTTTAAATGCTCTGACATTTTTTTACCTaccatttattgttttatttcctttttgaaAACCTAGTCTGACTGTAGGACTTGAGTGTGGGGAGGTGCTTGTCTTTACCTTCCCTTTATAGTTCATTGTAATAAAACCTGCAGTACATAGTATCCAA
>XM_026916984.2
TTTCCTGCACTGAAAAACATTCAGGTTAGGGGCAGAGTAGCTGTTTACCTGGtgtttctccttcttcttctttttttttttcttttagtcaGCAGCCGCGTTAGCATTAAGCAGGTTAAACAATGGTAGACAAGATGGATATGTCGTTGGACGACATCATCAAGCAGAATAAGCAGCAGAGGGGAGGCGCGGGCGGCCGCGGTGGGAGAGGTGGCCGAGGCCGAGGCGGCGCAGGCGGCGGCCGCGGTGCAGGAGGCGCCGGGCGACTGGGAGCTAACGCGGGCGGAAGCTTTGGAGGCCGCGGCGGAGGCTCAGGCCCCATGAGGAATCGTCAGAGCCTGAACCGTGGCAGAAGCAGACCCACGCCGTACAGCAGGCCCAAGCAGCTCCCTGACAAGTGGCAGCATGACCTGTTTGACAACGGCTACAGCACCAATTCTGGAGGAggcggtggtggtggtggaggagcgGGCGTGGAAACCGGAGGGAAGCTGCTTGTATCCAATCTTGACTTTGGTGTCTCCGATGCAGACATTCAGGAGCTTTTCGCGGAATTTGGCACCTTAAAGAAAGCTGCGGTTCATTATGACCGGTCCGGGCGCAGTCTTGGCACAGCAGATGTCCACTTCGAGAGGAAAGCAGATGCTTTGAAAGCCATGAAGCAATACAATGGTGTTCCTCTTGATGGTCGTCCAATGAACATTCAGCTAGTCACATCACAGATTGACGCACAGAGACGAGCTCCAATGCAGGGtcTGAGTCGTGGTGGTGGAGGCATGAACAGGAACAAGATGGGGAGCTTTGGAGGCATGCAGAGAGGACGGGGAGGTCGGGGAGGTGGAGGGCTCAGAGGCCGTGGCAGAGGGGGAAGGGGCAATAACAAACAGCAGCTTTCAGCAGAAGAATTGGATGCCCAGCTAGATGCCTACAATGCCAGGATGGACACCAGCTAAATGGCCTGATCTGTTCGAGCTACACTCTTCTCTCTTGGCAGCATCGTAGGGTGGTTGTTACCGCTTTGAAATGCCGGacgttttacatttacatgtctTCAGAAGTGATTTAAATTTGTGTACCAGTTTTCTCCTTTTAAATGCTCTGACATTTTTTTACCTaccatttattgttttatttcctttttgaaAACCTAGTCTGACTGTAGGACTTGAGTGTGGGGAGGTGCTTGTCTTTACCTTCCCTTTATAGTTCATTGTAATAAAACCTGCAGTACATAGTATCCAA

Function

symbol description
alyref Predicted to enable mRNA binding activity. Predicted to be involved in mRNA export from nucleus. Predicted to be active in nucleus. Orthologous to human ALYREF (Aly/REF export factor).

NR:

description
THO complex subunit 4 isoform X1

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K12881 THOC4, ALY; THO complex subunit 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026916983.2 True 1262 mRNA 0.52 6 13986722 13989892
XM_026916984.2 False 1242 mRNA 0.52 6 13986722 13989890

Neighbor

gene id symbol gene type direction distance location
arhgdia arhgdia,LOC107654583,LOC107665665 coding downstream 1699 13960501 ~ 13985023 (-)
recql5 recql5 coding downstream 48283 13904158 ~ 13938439 (-)
zgc:112183 rab37,zgc:112183,LOC108278300,LOC107665712,LOC107654586,LOC106606976,LOC105012908 coding downstream 152837 13815726 ~ 13833885 (-)
LOC113527894 LOC108278278,LOC108412261 coding downstream 177279 13763895 ~ 13809443 (-)
LOC113528466 LOC108276218,LOC108441001 coding downstream 271267 13714400 ~ 13715455 (-)
LOC113528592 LOC108256535,LOC108435873 coding upstream 193645 14183537 ~ 14202558 (-)
prpsap1 LOC105013149,LOC108255900,LOC106606986,LOC103375364,LOC101163819,LOC100700674,LOC108435871,LOC107731682 coding upstream 389143 14379035 ~ 14391094 (-)
LOC113527937 LOC108255917 coding upstream 404337 14394229 ~ 14410677 (-)
LOC113528545 LOC108255936,LOC103153053 coding upstream 425021 14414913 ~ 14432720 (-)
si:dkey-282h22.5 LOC108261121 coding upstream 457348 14447240 ~ 14451595 (-)
G210915 NA non-coding downstream 117149 13869199 ~ 13869573 (-)
G210877 NA non-coding downstream 162429 13758526 ~ 13824293 (-)
G210888 NA non-coding downstream 200211 13732419 ~ 13786511 (-)
LOC113527951 NA non-coding downstream 238723 13740069 ~ 13747999 (-)
G210886 NA non-coding downstream 259893 13723551 ~ 13726829 (-)
G210952 NA non-coding upstream 145202 14135094 ~ 14135304 (-)
G210973 NA non-coding upstream 226781 14216673 ~ 14216872 (-)
G210997 mgat5b,LOC108274344,LOC108435872 non-coding upstream 304415 14294307 ~ 14298198 (-)
G211003 NA non-coding upstream 339694 14329586 ~ 14329920 (-)
G211054 LOC108275544 non-coding upstream 471900 14461792 ~ 14462409 (-)
xylt2 xylt2,LOC107748866,LOC107665700,LOC107654585 other downstream 115591 13841166 ~ 13871131 (-)
LOC117598755 NA other downstream 587497 13395466 ~ 13399225 (-)
elof1 elof1,LOC103393660,LOC100703874,LOC106589640,LOC103384163 other downstream 591265 13390616 ~ 13395457 (-)
tom1 LOC108260160 other downstream 1427509 12546333 ~ 12559213 (-)
msrb1a msrb1 other downstream 1647453 12333854 ~ 12339269 (-)
mcrip1 mcrip1,fam195b,LOC107654575 other upstream 3984 13993876 ~ 14001037 (-)
LOC113528401 ppp1r27a,LOC108279187,LOC107748880,LOC107558871,LOC107654574,LOC107665625,LOC107548727,LOC107743019 other upstream 14277 14004169 ~ 14006512 (-)
pecam1 LOC108279165 other upstream 27723 14017615 ~ 14029641 (-)
G211151 usp36 other upstream 530385 14520277 ~ 14520975 (-)
LOC113528445 LOC108274755 other upstream 688858 14678750 ~ 14690132 (-)

Expression


Co-expression Network