LOC113528445 (LOC108274755)


Basic Information

Item Value
gene id LOC113528445
gene name LOC108274755
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 14678750 ~ 14690132 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026916985.2
TGTGAAGGCGCTGTGGCTCGCTGAGCTGCAGATCCGAGCGGATCTCACACACATGTGATCATCTGATGAAACCCTGCAGATCAGATGAAAGCCTTCAGAGATCCTGCGCTTTAGTTAATGCAGGGGGGGGGTGCTTTTAGAAGAGCGCTAGTGGCTGAGAggaggatcacacacacacacacacacacacacacacacagtgctggagCGCACAGAGCACCAGGCAGTGAAGGCGGCACTGAAGCTCGTGGTTATGATGAGCTTCGGCGTGGTGGTGATCTCGGCTGGTTTATTGGGACTGCTCAGTTTCACTCTGCTCGCTGTGGCTGTGGGCACCGACTACTGGTACATTATAGACGTGGATCAAGTCATCAACTCCAGCTGGCACTTTGCGAGCTCGCACTCGGGGCTGTGGAGGATCTACGAAGGAAAGAATGGCAGTTTTCATGACATCTCCTTTTACATGGATACTTCTGAGTTCagtgagcaggaaaaacaccTCTTACaCCTGCACAGGGTCATTGTCATCTTGCTGCCTCTCAGCCTGGTGCTGCTGATTTTCGGAGGCATCTTCGGCCTGGTCGGCTCTCTTGCCCGCAGTTATACAATCCTCACTGGAGTGGCTGTGTACTTCCTCATCTGCAGCCTCTTTACACTCTCTGGTGTGTGCATCTACATTAGCTACTCTCAGCAGGCTTTGGACGAACTGCGGCGGCTGCTGAGTGCTGAACTTCTCGCCCACATACACATGTCCTTCGGCTGGTCCCTGGCCTCGGCTTGTCTGTCTTATACACTCGAGGTGGCCTGTGGCGTCCTGCTCATACTCGCAGCTCTTCTTGCTCATCGTGAGCTACACCATGAGTCTACCGCTGCTTTCTCCATGTCCTAGAGACAccacagaggaagcacattttattatttatcactgTTTGCAGCAGGCTTTCTTACAAGAACTTGACTTCAAAGAAGGATGTGGAGGTAAACAAAAGGATCACATATTACTTTATTGGAATTGATTTGAAATTTAATGAGTGTTCATCAGTGTTCATTTTTCAAACTATTTAGGAGTGAATTTGTTAgttataaaaatgcacattttattaatgctgaagctGCTGGATGTTGGAGATTTGGGGATGAATGGTAGAAAACTTCTAGTGCAAGCTGTATGCAAAAAGAGCATCTTGTAATGTGGATTATGCTGTGTCCTTCTGCACTGCATGCATTAATCTCAAAGCTGTGAATGCCAAGTCAATACACATTCAGAAAGactgtgtctgcatgtgtgacTGCAATTTACACACTAAATAACATACATACTGTAGATAGTAATGACACAATTGGTGTACTCACATTCTATGTAGTAGTGTTGAATTATGTTTGGGTCATGGCCCAAGTTTCCATTAATCTGAGGTTATTATGTTCTATTGTTATCATCCATCTCCTCAGTATTATTGAAGTGTTATGATAATACCAAAACTTTATTGTTCTATCACAGTTACACAGTGAAAGAGCAAAACCTTTTACCTTCAACCAGAGCTTGTCTTTTAGCTAGTGTTAATCAGCTAGCTCACCCTGtatggagcttggaagctgacaaaagtatcttaatgttgttgttctttcagctgctcccattaggggtcgcccttcctgacgcaactcACCccatttatccaggcttgggaccagcactgagagagagCACTAGTCTGTGCACCCCAAGTGGCTGGGGTTGACGCCCAATGCAGAGCTCAAACGCACAATCCTGAGATCAAGAGTCCCATGCTCTACCAACTGAGCTAGCCAGGTGCCACAAAAGTATTTTAATGtgaatttcatatatttgtATCAGTATCAGAATACTACATACAAATCTCAAAGaatttaaatatcaaaaatacaGGATACAGCATTCAGGATTCTGAAGGAAAAGAAGACGCTTTCAGAGTGGTGAAACTCAGCATTTGCCAATCCTAGTCATCTGCCACACTCTTGTCCATGAAGTGCGTGCTAACAGTTGGCAGCAAACTAATGTTAATATAGCCTAGCTAGCTAGAACATTACCTAAATGATTATGCTGGGCTTATACTAAGCATCGAGTGTTTCACTGTAGAACACAAaaccctttttttatttgttttaccaTTCTGAAAGTGTATACTTTTCTCAGGGAAGCTCAGGTGCTTCACCTTTGGCCTAATCTGCATAATATCTGTATTTCTGAGATTTGAAATTTGTATttagtgttctttttttaaatcacaaaccataattttaaattattattgatattcGAATACATTTGTCAGCTTCTAAGCTTTGGCTCTTCTTCCTTGTTGTAACTGTGGATTCAGAGCACAGCACAAAGCCAGTGGAACAAGTTAGTTGGCTAAAACATAAGTTATTCTTGACGGAGAAAGGGTTGCTCTACTCTAATATCTCAGCATGCTGTTCTCTCAGGGTCacggtgtgtgtttatttgctcTCAGGGAGAGCATTGTGAAGAGGAAAACGCCTGCACTCTTCTAGTGTTTGTGTTCTTATCATTCATTCTGTGTTCGCTatgtatgtttttatctgatcagtgtttttttgttgtcctATCCTGTCTGTGTTGTCCAGCCTGGCTTTTAGCTAACTGCTAGCTCACTATGGGCTCTGTGTAAAGCTGGACCTATTGGAAATGGTGTAAGATGTATGTGTCTGAAAACTCCTGCCAAATCCTACAGCTCTGACTGTAAATTACTATGAATTGCTGTGAATTACAGGCTTGCCAGGGcaactcacagcagctcaggaacaaCATGTTTTGAgctatatattttcttttttcactgatttattgattttgtttttaatttcactaaaaaaaaagcatatgcaAGTCACCTCAATCCAgtttgaaaattaattttccTTATTTGATGGAACACAGAAGTAGCTC
>XR_004579411.1
TGTGAAGGCGCTGTGGCTCGCTGAGCTGCAGATCCGAGCGGATCTCACACACATGTGATCATCTGATGAAACCCTGCAGATCAGATGAAAGCCTTCAGAGATCCTGCGCTTTAGTTAATGCAGGGGGGGGGTGCTTTTAGAAGAGCGCTAGTGGCTGAGAggaggatcacacacacacacacacacacacacacacacagtgctggagCGCACAGAGCACCAGGCAGTGAAGGCGGCACTGAAGCTCGTGGTTATGATGAGCTTCGGCGTGGTGGTGATCTCGGCTGGTTTATTGGGACTGCTCAGTTTCACTCTGCTCGCTGTGGCTGTGGGCACCGACTACTGGTACATTATAGACGTGGATCAAGTCATCAACTCCAGCTGGCACTTTGCGAGCTCGCACTCGGGGCTGTGGAGGATCTACGAAGGAAAGAATGGCAGTTTTCATGACATCTCCTTTTACATGGATACTTCTGAGTTCagtgagcaggaaaaacaccTCTTACaCCTGCACAGGGTCATTGTCATCTTGCTGCCTCTCAGCCTGGTGCTGCTGATTTTCGGAGGCATCTTCGGCCTGGTCGGCTCTCTTGCCCGCAGTTATACAATCCTCACTGGAGTGGCTGTGTACTTCCTCATCTGCAGCCTCTTTACACTCTCTGGTGTGTGCATCTACATTAGCTACTCTCAGCAGGCTTTGGACGAACTGCGGCGGCTGCTGAGTGCTGAACTTCTCGCCCACATACACATGTCCTTCGGCTGGTCCCTGGCCTCGGCTTGTCTGTCTTATACACTCGAGGTGGCCTGTGGCGTCCTGCTCATACTCGCAGCTCTTCTTGCTCATCGTGAGCTACACCATGAGTCTACCGCTGCTTTCTCCATGTCCTAGAGACAccacagaggaagcacattttattatttatcactgTTTGCAGCAGGCTTTCTTACAAGAACTTGACTTCAAAGAAGGATGTGGAGctgctcccattaggggtcgcccttcctgacgcaactcACCccatttatccaggcttgggaccagcactgagagagagCACTAGTCTGTGCACCCCAAGTGGCTGGGGTTGACGCCCAATGCAGAGCTCAAACGCACAATCCTGAGATCAAGAGTCCCATGCTCTACCAACTGAGCTAGCCAGGTGCCACAAAAGTATTTTAATGtgaatttcatatatttgtATCAGTATCAGAATACTACATACAAATCTCAAAGaatttaaatatcaaaaatacaGGATACAGCATTCAGGATTCTGAAGGAAAAGAAGACGCTTTCAGAGTGGTGAAACTCAGCATTTGCCAATCCTAGTCATCTGCCACACTCTTGTCCATGAAGTGCGTGCTAACAGTTGGCAGCAAACTAATGTTAATATAGCCTAGCTAGCTAGAACATTACCTAAATGATTATGCTGGGCTTATACTAAGCATCGAGTGTTTCACTGTAGAACACAAaaccctttttttatttgttttaccaTTCTGAAAGTGTATACTTTTCTCAGGGAAGCTCAGGTGCTTCACCTTTGGCCTAATCTGCATAATATCTGTATTTCTGAGATTTGAAATTTGTATttagtgttctttttttaaatcacaaaccataattttaaattattattgatattcGAATACATTTGTCAGCTTCTAAGCTTTGGCTCTTCTTCCTTGTTGTAACTGTGGATTCAGAGCACAGCACAAAGCCAGTGGAACAAGTTAGTTGGCTAAAACATAAGTTATTCTTGACGGAGAAAGGGTTGCTCTACTCTAATATCTCAGCATGCTGTTCTCTCAGGGTCacggtgtgtgtttatttgctcTCAGGGAGAGCATTGTGAAGAGGAAAACGCCTGCACTCTTCTAGTGTTTGTGTTCTTATCATTCATTCTGTGTTCGCTatgtatgtttttatctgatcagtgtttttttgttgtcctATCCTGTCTGTGTTGTCCAGCCTGGCTTTTAGCTAACTGCTAGCTCACTATGGGCTCTGTGTAAAGCTGGACCTATTGGAAATGGTGTAAGATGTATGTGTCTGAAAACTCCTGCCAAATCCTACAGCTCTGACTGTAAATTACTATGAATTGCTGTGAATTACAGGCTTGCCAGGGcaactcacagcagctcaggaacaaCATGTTTTGAgctatatattttcttttttcactgatttattgattttgtttttaatttcactaaaaaaaaagcatatgcaAGTCACCTCAATCCAgtttgaaaattaattttccTTATTTGATGGAACACAGAAGTAGCTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026916985.2 True 2947 mRNA 0.43 4 14678750 14690132
XR_004579411.1 False 2297 misc_RNA 0.45 5 14678750 14690132

Neighbor

gene id symbol gene type direction distance location
LOC117599009 NA coding downstream 187975 14487821 ~ 14490775 (-)
LOC113528481 zgc:112320,LOC108275843,LOC101168622 coding downstream 213459 14463405 ~ 14465291 (-)
si:dkey-282h22.5 LOC108261121 coding downstream 227155 14447240 ~ 14451595 (-)
LOC113528545 LOC108255936,LOC103153053 coding downstream 246030 14414913 ~ 14432720 (-)
LOC113527937 LOC108255917 coding downstream 268073 14394229 ~ 14410677 (-)
LOC113528386 LOC108274059,LOC105908958,LOC108437141 coding upstream 2061 14692193 ~ 14709079 (-)
fscn2a LOC108274411,LOC108437142 coding upstream 42771 14732903 ~ 14738583 (-)
LOC113528036 LOC108255868 coding upstream 78475 14768607 ~ 14840369 (-)
LOC113527964 LOC108260935 coding upstream 185203 14875335 ~ 14878123 (-)
otop2 otop2 coding upstream 210701 14900833 ~ 14909395 (-)
G211195 socs3 non-coding downstream 56968 14619232 ~ 14621782 (-)
G211187 NA non-coding downstream 84086 14588820 ~ 14594664 (-)
G211054 LOC108275544 non-coding downstream 216341 14461792 ~ 14462409 (-)
G211003 NA non-coding downstream 348830 14329586 ~ 14329920 (-)
G210997 mgat5b,LOC108274344,LOC108435872 non-coding downstream 380552 14294307 ~ 14298198 (-)
G211269 NA non-coding upstream 137103 14827235 ~ 14844312 (-)
G211274 NA non-coding upstream 157120 14847252 ~ 14847456 (-)
G211346 NA non-coding upstream 244537 14934669 ~ 14935121 (-)
G211349 NA non-coding upstream 310813 15000945 ~ 15001328 (-)
G211363 NA non-coding upstream 345037 15035169 ~ 15036895 (-)
G211151 usp36 other downstream 157775 14520277 ~ 14520975 (-)
pecam1 LOC108279165 other downstream 649109 14017615 ~ 14029641 (-)
LOC113528401 ppp1r27a,LOC108279187,LOC107748880,LOC107558871,LOC107654574,LOC107665625,LOC107548727,LOC107743019 other downstream 672238 14004169 ~ 14006512 (-)
mcrip1 mcrip1,fam195b,LOC107654575 other downstream 677713 13993876 ~ 14001037 (-)
xylt2 xylt2,LOC107748866,LOC107665700,LOC107654585 other downstream 807619 13841166 ~ 13871131 (-)
rac1b rac3,rac1,RAC1,LOC106606208,LOC102788082,LOC107388169,LOC105898786,LOC108437155,LOC106601744,LOC105026138 other upstream 288487 14978619 ~ 14986112 (-)
LOC113528178 LOC108260277,LOC108437874,LOC105905285,LOC100698953,LOC104918338,LOC103373486,LOC106518679,LOC108241369,LOC107083184,LOC103393004 other upstream 1460943 16151075 ~ 16203991 (-)
LOC113528039 LOC108276772 other upstream 1882413 16572545 ~ 16598688 (-)
LOC113527915 LOC108431896,LOC108275040,LOC107695676,LOC107553625,LOC107601566,LOC101883507,LOC103358698 other upstream 2071100 16761232 ~ 16765341 (-)
LOC113528519 NA other upstream 2602641 17292773 ~ 17319719 (-)

Expression


Co-expression Network