kdelr2a (erd22,kdelr2a,LOC108432184,LOC107670681,LOC107555655,LOC107728665)


Basic Information

Item Value
gene id kdelr2a
gene name erd22,kdelr2a,LOC108432184,LOC107670681,LOC107555655,LOC107728665
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 12385975 ~ 12389435 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026916987.2
CATTGTAATTTAACTCTTGGCCACGTCCACCGGCCACGTCGCCCCGTGTTCGCCATATTTCTCGGAGGAATGCACTGGAAAAGTGTTGGAAAACGGTTCAAGCAAATTTCAGCCGTCTCGTACTCGTAACAGCGGATAAAACGTCGTCTTGATTTGTGTTCAAGTAGGAACATTTCAAATCCACCATGAATATCTTTAGGCTGGCTGGAGATCTGTCTCACTTAGCAGCAATCATCATTCTGCTGCTCAAAATCTGGAAAACCCGATCCTGCGCAGGAATCTCTGGGAAAAGCCAGATCCTCTTTGCTTTGGTTTTCACAACACGTTATCTGGATCTGCTCACCTCCTTTATTTCACTCTACAACACGTGCATGAAGATCATCTACATCGGATGCGCCTATGCCACCGTGTACCTAATCTACATGAAATTCAAGGCTACTTATGACGGAAACCATGACACCTTTAGAGTGGAGTTTCTGGTAGTTCCTGTAGGAGGCTTGGCCTTTTTGGTCAACCATGACTTCTCTCCTTTGGAGATCCTGTGGACCTTCTCAATCTACCTTGAATCAGTGGCCATCCTGCCTCAGCTCTTCCTGATCAGTAAGACCGGAGAGGCTGagaccatcaccacccactatCTGTTCTGCCTGGGTGTCTACCGTGCCCTCTATCTCTTCAACTGGATCTGGAGGTTCTACTTTGAGGGCTTCTTCGATATGATTGCCATTGTGGCTGGGGTGGTCCAGACCATCTTGTATTGTGACTTCTTCTACCTTTATGTCACAAAAGTGCTGAAAGGAAAGAAGCTGAGCTTACCAGCGTAAGTGCCAAAGAACAGAAGACCTGTGTCACCATTCAGACTCATATGGGGGGCACGGGCCAGCAATGCCACAGCAAGAGGCCGAAGACAGAAAGCGCATGTGAAACTGCTGCTGTTTGTGAAATGTCATCTGGATGAAAAACGACAGCACAATGACTGCAATGTGGACTTCTTTTGGATTTGGCAACGGAAATTTTTGTTTTCAGCATCTTGCAATACCTTTTTagtgctgttaaaaaaaaaaaaaaaactcaaaagaacaaaaaaaaaaagtaaaccaataCTTTTCTATGTGAGGTGTTCCACAAGCTTATACTTTAAATGTTAAAGATTGGCCAGATTAAACACACCCTTTAACTCCTACTACATGTACTTTTGAAAATTTATTTGTGGTCTCAAGGTTTCTAGGAGTGTTGAGTCAGGTAAAGTTTTTCTTTGACATAAGTGACACAAATTCTTATctgcagaaatattttaaaccaTCTCATTCTTCCCTATAACATGAAATTGCTTTAGATTCCAATGGCCTTTCAGAGTTCCTAAACGTACACAAATGCCTTACATTCATTTGAACAGCATTATAGAAAGCCGAAATGTTTCCTTGTAAATGCATCCACTTTTATGTAAAAGGAGAATGTTTTGTACTGCCAAATCATTCAGCACTGAtacgttttattccttatgtattgGCTCCAAATTACTATGGattttgtatttctgtaaaggcTGTAGTCATTCAGCAGTAACTCATGTAATGTACAACATCCATAACACGGGACAAGataatattaatagtagtatCCAGTATTTGTTCTTTAGATGCAGTAATTTATCAGAAAGCCCATGGCATTTAATATGGTGTGCATATTATCAGACAagatctggagtgtgtgtgtatatagattTCAAAAGATTCATAGAACACTTGTGTTCATTTTGGACATTCATTGATATATTCAGTATGCTTGATGTCCCCCTTTATGAGTCATTCCTCTAGggttttcatttttgttgagtttttacATTATCACCTCCAATAAAAATTTTACAGGcca

Function

symbol description
kdelr2a Predicted to enable KDEL sequence binding activity. Predicted to be involved in endoplasmic reticulum to Golgi vesicle-mediated transport; protein retention in ER lumen; and retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum. Predicted to act upstream of or within protein transport and vesicle-mediated transport. Predicted to be located in Golgi membrane and endoplasmic reticulum membrane. Predicted to be integral component of membrane. Predicted to be active in cis-Golgi network and endoplasmic reticulum. Predicted to colocalize with COPI-coated vesicle membrane. Is expressed in several structures, including axis; digestive system; ectoderm; fin; and polster. Human ortholog(s) of this gene implicated in osteogenesis imperfecta type 21. Orthologous to several human genes including KDELR2 (KDEL endoplasmic reticulum protein retention receptor 2).

NR:

description
ER lumen protein-retaining receptor 2

GO:

id name namespace
GO:0006621 protein retention in ER lumen biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0015031 protein transport biological_process
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0046923 ER retention sequence binding molecular_function

KEGG:

id description
K10949 KDELR; ER lumen protein retaining receptor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026916987.2 True 1875 mRNA 0.40 5 12385975 12389435

Neighbor

gene id symbol gene type direction distance location
LOC113528323 LOC108258986 coding upstream 29448 12340950 ~ 12356527 (+)
fahd1 fahd1 coding upstream 97523 12287220 ~ 12288452 (+)
narfl narfl,LOC106606697 coding upstream 113884 12264705 ~ 12272091 (+)
cbx8a cbx8,LOC108261002,LOC107085518 coding upstream 253678 12129591 ~ 12132297 (+)
cbx4 cbx4,LOC108260285 coding upstream 263839 12116439 ~ 12122136 (+)
spag9a LOC108257234,LOC108432181 coding downstream 7069 12396504 ~ 12435649 (+)
tob1a tob1,LOC108432179,LOC107690006,LOC107555665,LOC104949960,LOC107758110 coding downstream 97842 12487277 ~ 12490947 (+)
ntn1b ntn1,LOC107728387,LOC107583316,LOC107672692,LOC107719327 coding downstream 226849 12616284 ~ 12661616 (+)
usp43b usp43,LOC108432083,LOC107583297 coding downstream 305934 12695369 ~ 12775815 (+)
grb2b grb2b,grb2,LOC108256494,LOC107719324,LOC107672691,LOC108432081,LOC107723603,LOC107672145,LOC105013161 coding downstream 394862 12784297 ~ 12817380 (+)
G209945 NA non-coding upstream 4989 12378946 ~ 12380986 (+)
G209944 NA non-coding upstream 7562 12378159 ~ 12378413 (+)
G209943 NA non-coding upstream 7891 12375907 ~ 12378084 (+)
G209897 grid2ipa,LOC107758114,LOC107583579,LOC107559228,LOC107689997,LOC107728614,LOC107670677 non-coding upstream 153324 12232321 ~ 12232651 (+)
G209894 NA non-coding upstream 166422 12219301 ~ 12219553 (+)
G210086 NA non-coding downstream 156998 12546433 ~ 12548503 (+)
G210160 NA non-coding downstream 389814 12779249 ~ 12780136 (+)
G210209 NA non-coding downstream 431641 12821076 ~ 12821284 (+)
G210384 NA non-coding downstream 655555 13044990 ~ 13045833 (+)
G210532 NA non-coding downstream 976249 13365684 ~ 13365893 (+)
ndufb10 ndufb10 other upstream 11603 12367566 ~ 12374372 (+)
arhgap17b LOC108279379,LOC108432202 other upstream 195905 12158703 ~ 12190070 (+)
LOC113528416 LOC108275780 other upstream 245604 12135269 ~ 12140371 (+)
tbc1d16 tbc1d16,LOC107559246,LOC107689993,LOC107670685,LOC107562324 other upstream 299917 12049407 ~ 12086058 (+)
luc7l3 luc7l3,LOC107674472,LOC107726809,LOC107654661 other upstream 808152 11567119 ~ 11577823 (+)
znf653 znf653,LOC104961106,LOC107553636,LOC103393609 other downstream 1045946 13435381 ~ 13445686 (+)
zgc:158403 zgc:158403,LOC108258290,LOC108441004,LOC107718630,LOC107553678,LOC107661656,LOC107695678 other downstream 1074650 13464085 ~ 13493942 (+)
socs3a socs3 other downstream 2229769 14619204 ~ 14621788 (+)
LOC117598752 NA other downstream 2598651 14988086 ~ 14991450 (+)
G211913 NA other downstream 3528782 15918217 ~ 15968759 (+)

Expression


Co-expression Network