LOC113528448 (tmem159)


Basic Information

Item Value
gene id LOC113528448
gene name tmem159
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 12389706 ~ 12394578 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026916992.2
aatacaaAATAGCCTGGGACGTTTCTGTACAGATCAAATAAGTCTTTCCAGTCACCTTTatctaaatttattaattattggaACAATTTGGCTCCAACTGACAGTCTGTGCCATGTATTTAGACTATAACTGTATTTACATAGCTCAGTGACTACAGCTGTGTGATATTAGTTGTAAAAGGTGGGAAATGTAGTCgtaattcatttattactggATCATTGGGAAATTATTTCCAGTTTTTGTTGGTTAGTTTTCTCCAGTTCTAGTTTTTTTCTTTCGACAGACGGCTTCATGGTGCAGGGGGAAGCGTTAGTCAGAATACGGAGAAATGCATTTTACGTGTTTTTCGGGTGTGCAGAGGAAATGAGGTGTTGCTGCTGGAGGCGCTCCAGGCTTTTGAGGATTAATGGAGGACTTCAAGTGGGACCCCAAGATCGCAGAGCTCTTGAATAGCAAGGTGGGAAAATATCTGAGCGACCACCCCTTCGTCACACTGGTGCTGCTTGTATTTGGTGTAACAGCCTCAGTACCTGTTGGGCTTTTCCTGGCGTTTGCCGCTGTTACGTTCATCACTGTTACTGCATACTGCATCTTTGCTGAAATTGTGCTGCTGACGATCGGAGGAGTCATCTTGCTCTGTGTTCTCTGCTGTCTTGCCGTGGTGGCCTTCTGGATCTCCTGTGTGCTAAGCGTCCTGTACATCATTGGCTCACATGTCCTCAATTACTCTGTTATTCCCAGTAGCGTACCTGAAAGGACAATCTCTGCAGGAGacatggagaaagaaaaagacctAAATGACTGAGTCTAGGCATATACAGTCTAGGCATTTATGTTGCACACCCCCATCTACATCAACATCTTTTGACCAGCAAGATTGCAAtggcaaaatatatatttgttacatgttttataatataaacaatgattttataaatatattttatatttttaatctctGAAACATGTGCAATATCTCATGTTAAATGTTACACGTTGGCACATTATTCCAGGTCAGCATTATATACCAGTGTTAACTGGTGTTTCAGAGCCCCTAAGACAACAACTGACATTCTGTGAAATGGTTGTTAGTACTCTTAGTGCCATTTGGGCAAACAGTGGATTTTAAGAGCATATATTTTTATAGGTCAGCATTTATTTGTGGGTTTCTGATGCCTTAAAGGGTTTTTTCTTCCTACAATGATCACTGTACACTTGTATTGTACTATAAAGGAAGTCTGCATATCATTTTCA
>XM_026916993.2
CTGTTGCTCTCCTGGTCGAGGTGCAGCAGCTAAACGCAGCTGAAGTCAGGAAAGCCTCAGCATTAGCTCAGTGCTAATAGTGCTAATACTGAATGTAGCTACTGCAGAATTTATTTTGTTAGGAATAATTTTGTCGGAATAACAGGAATAACATTATTGTCGGAATAATGACAGAATTCAAGAGGAAATGAGGTGTTGCTGCTGGAGGCGCTCCAGGCTTTTGAGGATTAATGGAGGACTTCAAGTGGGACCCCAAGATCGCAGAGCTCTTGAATAGCAAGGTGGGAAAATATCTGAGCGACCACCCCTTCGTCACACTGGTGCTGCTTGTATTTGGTGTAACAGCCTCAGTACCTGTTGGGCTTTTCCTGGCGTTTGCCGCTGTTACGTTCATCACTGTTACTGCATACTGCATCTTTGCTGAAATTGTGCTGCTGACGATCGGAGGAGTCATCTTGCTCTGTGTTCTCTGCTGTCTTGCCGTGGTGGCCTTCTGGATCTCCTGTGTGCTAAGCGTCCTGTACATCATTGGCTCACATGTCCTCAATTACTCTGTTATTCCCAGTAGCGTACCTGAAAGGACAATCTCTGCAGGAGacatggagaaagaaaaagacctAAATGACTGAGTCTAGGCATATACAGTCTAGGCATTTATGTTGCACACCCCCATCTACATCAACATCTTTTGACCAGCAAGATTGCAAtggcaaaatatatatttgttacatgttttataatataaacaatgattttataaatatattttatatttttaatctctGAAACATGTGCAATATCTCATGTTAAATGTTACACGTTGGCACATTATTCCAGGTCAGCATTATATACCAGTGTTAACTGGTGTTTCAGAGCCCCTAAGACAACAACTGACATTCTGTGAAATGGTTGTTAGTACTCTTAGTGCCATTTGGGCAAACAGTGGATTTTAAGAGCATATATTTTTATAGGTCAGCATTTATTTGTGGGTTTCTGATGCCTTAAAGGGTTTTTTCTTCCTACAATGATCACTGTACACTTGTATTGTACTATAAAGGAAGTCTGCATATCATTTTCA
>XM_026916994.2
TTTCAGAAGAGGCCCAGAGGAAATGAGGTGTTGCTGCTGGAGGCGCTCCAGGCTTTTGAGGATTAATGGAGGACTTCAAGTGGGACCCCAAGATCGCAGAGCTCTTGAATAGCAAGGTGGGAAAATATCTGAGCGACCACCCCTTCGTCACACTGGTGCTGCTTGTATTTGGTGTAACAGCCTCAGTACCTGTTGGGCTTTTCCTGGCGTTTGCCGCTGTTACGTTCATCACTGTTACTGCATACTGCATCTTTGCTGAAATTGTGCTGCTGACGATCGGAGGAGTCATCTTGCTCTGTGTTCTCTGCTGTCTTGCCGTGGTGGCCTTCTGGATCTCCTGTGTGCTAAGCGTCCTGTACATCATTGGCTCACATGTCCTCAATTACTCTGTTATTCCCAGTAGCGTACCTGAAAGGACAATCTCTGCAGGAGacatggagaaagaaaaagacctAAATGACTGAGTCTAGGCATATACAGTCTAGGCATTTATGTTGCACACCCCCATCTACATCAACATCTTTTGACCAGCAAGATTGCAAtggcaaaatatatatttgttacatgttttataatataaacaatgattttataaatatattttatatttttaatctctGAAACATGTGCAATATCTCATGTTAAATGTTACACGTTGGCACATTATTCCAGGTCAGCATTATATACCAGTGTTAACTGGTGTTTCAGAGCCCCTAAGACAACAACTGACATTCTGTGAAATGGTTGTTAGTACTCTTAGTGCCATTTGGGCAAACAGTGGATTTTAAGAGCATATATTTTTATAGGTCAGCATTTATTTGTGGGTTTCTGATGCCTTAAAGGGTTTTTTCTTCCTACAATGATCACTGTACACTTGTATTGTACTATAAAGGAAGTCTGCATATCATTTTCA
>XM_034310198.1
aatacaaAATAGCCTGGGACGTTTCTGTACAGATCAAATAAGTCTTTCCAGTCACCTTTatctaaatttattaattattggaACAATTTGGCTCCAACTGACAGTCTGTGCCATGTATTTAGACTATAACTGTATTTACATAGCTCAGTGACTACAGCTGTGTGATATTAGTTGTAAAAGACGGCTTCATGGTGCAGGGGGAAGCGTTAGTCAGAATACGGAGAAATGCATTTTACGTGTTTTTCGGGTGTGCAGAGGAAATGAGGTGTTGCTGCTGGAGGCGCTCCAGGCTTTTGAGGATTAATGGAGGACTTCAAGTGGGACCCCAAGATCGCAGAGCTCTTGAATAGCAAGGTGGGAAAATATCTGAGCGACCACCCCTTCGTCACACTGGTGCTGCTTGTATTTGGTGTAACAGCCTCAGTACCTGTTGGGCTTTTCCTGGCGTTTGCCGCTGTTACGTTCATCACTGTTACTGCATACTGCATCTTTGCTGAAATTGTGCTGCTGACGATCGGAGGAGTCATCTTGCTCTGTGTTCTCTGCTGTCTTGCCGTGGTGGCCTTCTGGATCTCCTGTGTGCTAAGCGTCCTGTACATCATTGGCTCACATGTCCTCAATTACTCTGTTATTCCCAGTAGCGTACCTGAAAGGACAATCTCTGCAGGAGacatggagaaagaaaaagacctAAATGACTGAGTCTAGGCATATACAGTCTAGGCATTTATGTTGCACACCCCCATCTACATCAACATCTTTTGACCAGCAAGATTGCAAtggcaaaatatatatttgttacatgttttataatataaacaatgattttataaatatattttatatttttaatctctGAAACATGTGCAATATCTCATGTTAAATGTTACACGTTGGCACATTATTCCAGGTCAGCATTATATACCAGTGTTAACTGGTGTTTCAGAGCCCCTAAGACAACAACTGACATTCTGTGAAATGGTTGTTAGTACTCTTAGTGCCATTTGGGCAAACAGTGGATTTTAAGAGCATATATTTTTATAGGTCAGCATTTATTTGTGGGTTTCTGATGCCTTAAAGGGTTTTTTCTTCCTACAATGATCACTGTACACTTGTATTGTACTATAAAGGAAGTCTGCATATCATTTTCA
>XM_034310199.1
aatacaaAATAGCCTGGGACGTTTCTGTACAGATCAAATAAGTCTTTCCAGTCACCTTTatctaaatttattaattattggaACAATTTGGCTCCAACTGACAGTCTGTGCCATGTATTTAGACTATAACTGTATTTACATAGCTCAGTGACTACAGCTGTGTGATATTAGTTGTAAAAGGTGGGAAATGTAGTCgtaattcatttattactggATCATTGGGAAATTATTTCCAGTTTTTGTTGGTTAGTTTTCTCCAGTTCTAGTTTTTTTCTTTCGACAGACGGCTTCATGGTGCAGGGGGAAGCGTTAGTCAGAATACGGAGGAAATGAGGTGTTGCTGCTGGAGGCGCTCCAGGCTTTTGAGGATTAATGGAGGACTTCAAGTGGGACCCCAAGATCGCAGAGCTCTTGAATAGCAAGGTGGGAAAATATCTGAGCGACCACCCCTTCGTCACACTGGTGCTGCTTGTATTTGGTGTAACAGCCTCAGTACCTGTTGGGCTTTTCCTGGCGTTTGCCGCTGTTACGTTCATCACTGTTACTGCATACTGCATCTTTGCTGAAATTGTGCTGCTGACGATCGGAGGAGTCATCTTGCTCTGTGTTCTCTGCTGTCTTGCCGTGGTGGCCTTCTGGATCTCCTGTGTGCTAAGCGTCCTGTACATCATTGGCTCACATGTCCTCAATTACTCTGTTATTCCCAGTAGCGTACCTGAAAGGACAATCTCTGCAGGAGacatggagaaagaaaaagacctAAATGACTGAGTCTAGGCATATACAGTCTAGGCATTTATGTTGCACACCCCCATCTACATCAACATCTTTTGACCAGCAAGATTGCAAtggcaaaatatatatttgttacatgttttataatataaacaatgattttataaatatattttatatttttaatctctGAAACATGTGCAATATCTCATGTTAAATGTTACACGTTGGCACATTATTCCAGGTCAGCATTATATACCAGTGTTAACTGGTGTTTCAGAGCCCCTAAGACAACAACTGACATTCTGTGAAATGGTTGTTAGTACTCTTAGTGCCATTTGGGCAAACAGTGGATTTTAAGAGCATATATTTTTATAGGTCAGCATTTATTTGTGGGTTTCTGATGCCTTAAAGGGTTTTTTCTTCCTACAATGATCACTGTACACTTGTATTGTACTATAAAGGAAGTCTGCATATCATTTTCA

Function

symbol description
tmem159 Predicted to be involved in lipid droplet formation. Predicted to be located in endoplasmic reticulum membrane and lipid droplet. Orthologous to human LDAF1 (lipid droplet assembly factor 1).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026916992.2 True 1254 mRNA 0.40 6 12389706 12394578
XM_026916993.2 False 1078 mRNA 0.41 5 12389706 12394079
XM_026916994.2 False 913 mRNA 0.41 5 12389706 12393760
XM_034310198.1 False 1151 mRNA 0.41 7 12389706 12394578
XM_034310199.1 False 1220 mRNA 0.40 5 12389706 12394578

Neighbor

gene id symbol gene type direction distance location
si:ch211-139g16.8 NA coding downstream 8672 12375893 ~ 12381034 (-)
rps2 rps2,LOC107690003,LOC107758112 coding downstream 15441 12371533 ~ 12374265 (-)
LOC113528330 rpl3l coding downstream 25940 12356624 ~ 12363766 (-)
LOC113528334 hagh,LOC105892024,LOC106606699 coding downstream 102568 12280033 ~ 12287138 (-)
hagh haghl,LOC108432196,LOC104918824,LOC103393077,LOC101076411 coding downstream 111115 12272170 ~ 12278591 (-)
wfikkn2a wfikkn2,LOC103032076,LOC107690026,LOC107758109,LOC107555656,LOC107670669,LOC107583670 coding upstream 131762 12526340 ~ 12530301 (-)
ankrd40 ankrd40 coding upstream 142834 12537412 ~ 12543062 (-)
zgc:171844 LOC108260146,LOC108432048,LOC100703987,LOC106607059 coding upstream 168372 12562950 ~ 12583366 (-)
mfsd6l mfsd6l coding upstream 193097 12587675 ~ 12591505 (-)
pik3r6b LOC108260485 coding upstream 198999 12593577 ~ 12612926 (-)
G209984 NA non-coding downstream 56044 12333454 ~ 12333662 (-)
G209961 NA non-coding downstream 152514 12236974 ~ 12237192 (-)
G209951 NA non-coding downstream 215299 12173454 ~ 12174407 (-)
G209946 NA non-coding downstream 230594 12158070 ~ 12159112 (-)
G209868 NA non-coding downstream 253787 12135508 ~ 12135919 (-)
LOC117598772 NA non-coding upstream 51883 12446461 ~ 12463878 (-)
G210123 NA non-coding upstream 191853 12586431 ~ 12587089 (-)
G210351 kpna2,LOC108261381,LOC100304957,LOC108432045 non-coding upstream 473012 12867590 ~ 12868480 (-)
G210349 kpna2,LOC108261381,LOC108432045,LOC106607066 non-coding upstream 474674 12869252 ~ 12870186 (-)
G210350 NA non-coding upstream 527359 12921937 ~ 12923464 (-)
msrb1a msrb1 other downstream 50437 12333854 ~ 12339269 (-)
LOC113528332 hs3st6,LOC102795972 other downstream 74208 12297776 ~ 12315498 (-)
zgc:162612 foxd1,LOC108278341,LOC107757501 other downstream 688534 11699849 ~ 11701172 (-)
hmox1a hmox1,LOC108432221 other downstream 741709 11642157 ~ 11647997 (-)
tecpr1b LOC108276900 other downstream 1919188 10450724 ~ 10470518 (-)
tom1 LOC108260160 other upstream 151755 12546333 ~ 12559213 (-)
elof1 elof1,LOC103393660,LOC100703874,LOC106589640,LOC103384163 other upstream 996038 13390616 ~ 13395457 (-)
LOC117598755 NA other upstream 1000888 13395466 ~ 13399225 (-)
xylt2 xylt2,LOC107748866,LOC107665700,LOC107654585 other upstream 1446588 13841166 ~ 13871131 (-)
mcrip1 mcrip1,fam195b,LOC107654575 other upstream 1599298 13993876 ~ 14001037 (-)

Expression


Co-expression Network