tmem86b (LOC108256452)


Basic Information

Item Value
gene id tmem86b
gene name LOC108256452
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 6888662 ~ 6890923 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026916996.2
ttggacacacagacacactgctttCAGAGGCACCGCAGGACCCTGTGGAATAGATACATCCCATAttcactgagtgtgtgagagggagaaggagaaagatGGACATCCTGGAGACGGACGCCTATGATAGGAGACAGCGCAGGAACacgTCCTgcattctgtttctttttctccttcctttCTTTGCTTCTGCAGCATTGTATTTCTACCTGTGGATCCCAGATTCTGCTCCGTCCATCCTGGCTGCAGGTGTGAAGGCAGCCCCCGTGCTCTCATTGGCTTTTGTGGTTCTGAGTTACATTGGGGGGAAGAGCCTGCTGGGCGTGGCTGGAGGGCTGGTGATGTCAGCAGGGGGAGACATCTGTCTCATCTGGCCACATCTTTTCCTCCtggGAATGGCCTGCTTTGCTCTGGCCCACCTGCTGtactctctttccttccttacTTCACGTTATTCCTCTCAATCCTCTTCTTCCTGTGGCCTCTACTTCTTCTACCTCCTGCTCTGGGTAGCAAGTGGTGGAATTTACGTCTATCTCCTGCCCTTCCTCCAGAAGTCACCGGAGCCTGAGGTTTTTGTCCCGGCTGTTGGAGGTTACGCGCTTCTCATCGTTCTGATGGCGACGCTTGCGGCACGAACGAGGCGCCCTCTGGTTCTGCTAGGTGGCCTGGTCTTCATGGTGTCTGACTTCACCCTTGCGCTGCAGCATTTTAAAGTTGTTGAGCATCTGGATCATGGCAAGCATATTGTCATGACAACGTACTACCTGGCCCAGCTGCTGATCGCCATTGGTGACGTGAAGGCGACGATGGCAGAACAGGGCGAAGAGTTCCACAAATGGAAGAGGTCATAGGGGCGGTGTGGAGACATGGGCATGTGGGACTAATGCAGACTTCATACAGACGGATATGAATCATTACTTACACTTATACTGTATTctgtatttaaatgtttacGTAATGTATAGGTCGTAAGTCTGTATTGTTTAAATGCATCTACTAGGTTTTAAAAGGCCAgcaaacataaatattatttatagctACTGACCATGCTTATCATTTGAGCACAAACTAGGACATGTCTGGTCATGACTCTACTTAGACTATACTATATTTcttacaatattaaaataaccaAAAACTCTCAAACGATAAGTAAGAAACGTTGAATAAACTTGGGAAATCTACACATCTAA

Function

NR:

description
PREDICTED: lysoplasmalogenase-like protein TMEM86A

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026916996.2 True 1196 mRNA 0.48 3 6888662 6890923

Neighbor

gene id symbol gene type direction distance location
stk17al LOC108258001 coding downstream 27755 6846895 ~ 6860907 (-)
atp6v0a1a atp6v0a1,LOC107567567,LOC105890791 coding downstream 68293 6794354 ~ 6820369 (-)
cavin1a ptrf coding downstream 95127 6773433 ~ 6793535 (-)
stat3 stat3 coding downstream 123748 6734117 ~ 6764914 (-)
si:ch211-210g13.5 si:ch211-210g13.5,LOC108256246,LOC108441607,LOC107729192,LOC107687011,LOC103359488 coding downstream 256317 6557138 ~ 6632345 (-)
gys1 gys1,LOC108414029,LOC107653402,LOC107690304,LOC107731036 coding upstream 8084 6899007 ~ 6916995 (-)
zgc:55558 zgc:55558,p-ras,LOC108258948,LOC108413997,LOC107653435,LOC103023536,LOC107567516,LOC105894964,LOC103374945 coding upstream 46631 6937554 ~ 6944028 (-)
slc17a7a slc17a7a,LOC108260804,LOC108413988,LOC107731050,LOC107754185,LOC107653427,LOC101069507,LOC100693903 coding upstream 63190 6954113 ~ 6978133 (-)
slc6a16a LOC108260811,LOC107568576,LOC107690307,LOC108413965 coding upstream 89617 6980540 ~ 7002180 (-)
kcnj12b LOC108274453,LOC108412542,LOC107690312,LOC107567496,LOC107731081,LOC107754252,LOC107567486 coding upstream 168046 7058969 ~ 7067348 (-)
G206923 NA non-coding downstream 60516 6826368 ~ 6828146 (-)
G206924 NA non-coding downstream 62902 6824896 ~ 6825760 (-)
G206649 NA non-coding downstream 542299 6273816 ~ 6346363 (-)
G206628 NA non-coding downstream 684466 6203312 ~ 6204196 (-)
LOC113527891 NA non-coding downstream 698736 6187474 ~ 6189926 (-)
G207057 NA non-coding upstream 211325 7102248 ~ 7102389 (-)
G207198 NA non-coding upstream 285609 7176532 ~ 7176755 (-)
G207221 NA non-coding upstream 336462 7227385 ~ 7227664 (-)
G207226 NA non-coding upstream 346750 7237673 ~ 7237881 (-)
G207227 NA non-coding upstream 349318 7240241 ~ 7240907 (-)
stat5a sta5b,stat5,LOC108279147,LOC108444239,LOC105013349 other downstream 162497 6646058 ~ 6726165 (-)
G206604 NA other downstream 693666 6126910 ~ 6194996 (-)
LOC113528542 NA other downstream 927612 5953733 ~ 5961050 (-)
retsat LOC108257121,LOC108432054 other downstream 937665 5940862 ~ 5950997 (-)
G206282 NA other downstream 1047185 5841137 ~ 5841477 (-)
G207231 spsb3 other upstream 427680 7318603 ~ 7321962 (-)
natd1 natd1,LOC107661164,LOC107568532,LOC107689058 other upstream 534794 7425717 ~ 7431112 (-)
crhr1 crhr1,LOC108261365,LOC107662410,LOC108413653 other upstream 668844 7559767 ~ 7705492 (-)
slc4a1a LOC108279353 other upstream 1358962 8249885 ~ 8267638 (-)
selenow2a mien1,sepw2a,LOC107566883,LOC107755209 other upstream 1388844 8279767 ~ 8289808 (-)

Expression


Co-expression Network