ccdc103 (ccdc103)


Basic Information

Item Value
gene id ccdc103
gene name ccdc103
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 3059168 ~ 3063811 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026917006.2
tggttaccagTATGTTTATATAGGCTAGCGCGAGCGCGTGGCTAAAAGCTAGCTTACCTGTAACACTTCGGCTGCTTGACTAGCCACAGGTTAgcgtaaatgaaataaaaagctgaATTAAACGCACTCGGACATGGAGAAAGGTGATATTATTGATTTCTCAGCGCTGGAGAAGGAGCTGAAGCGCGCTGTGGAAGCGGATAAAAAGTACCAGAGAGAAAACGACGCTAAATTCCGCGCTATTCACCAAAAAGTCGCCACTTATGAAGAGTTCCGGGACATTGTGCAGGCATCTCACCTGAAGCCTTTAgataaaaaggacaaaaacacaCCGCGGAAACAGCCCTGGAACCCAATCAGTACCAGAAACACAGAACTGACGCACACCAGCACTGACTCACTGCAGTCTGTGCTGCGTGAGTCGCAGCCTCGCAGCGAGTCAGAGTTCGGTCGAGACTGGCGCAGGTTCAAGGGCAGCTCGGTGGAGAAGTATGCTTTCCTGCTCAGGCTGGGTGGAGAGACCCTGAGGGAGATGTTCCACACTGAGGTGGGCTTCGGGCTCCTGGGCGAGTTCCTGATGGTCCTCTGTCAGTGTTTCAGACCCGGGGACGAGGCGGTAGTGCTCGGAGTGCTGGAGGGACTCTCACTGACCGGCCGCTTCAGCCTCAGCGTATCTCTGCTGAGTGAAGAGGAGCGAGGAGCGTGTGAGCGTCTGTTCTACACCCTGCTGGAGACAAATCCCAACCTCGCCGATGTTCCTGAGAGCCAGAAGGAACGAGCTACAGAGACTGAGGAAAACACATCGCAGGATGATGGGACTGAGGCAGCAGGGAAGCTCAGGGCTTTGATGGCAAAGTATGGAGTTTGTGAAAGAGTGAAATAGACAGTCAGTTCCCTGAATGAAAAaactttcaaaattaaaaaaagttcattatGTTCCTGCTGAGTTTTTTGGTGAAAGGAACAAATCAAGCAAaagtaaatgtgcaaaattttttttttggccagcaatgaatgaataaataaataaacaaataa

Function

symbol description
ccdc103 Acts upstream of or within axonemal dynein complex assembly; cerebrospinal fluid circulation; and embryonic heart tube morphogenesis. Located in axoneme. Is expressed in several structures, including Kupffer's vesicle; forerunner cell group; otic placode; peripheral olfactory organ; and spinal cord neural tube. Used to study primary ciliary dyskinesia. Human ortholog(s) of this gene implicated in primary ciliary dyskinesia 17. Orthologous to human CCDC103 (coiled-coil domain containing 103).

NR:

description
PREDICTED: coiled-coil domain-containing protein 103-like

GO:

id name namespace
GO:0003341 cilium movement biological_process
GO:0003146 heart jogging biological_process
GO:0070286 axonemal dynein complex assembly biological_process
GO:0001947 heart looping biological_process
GO:0005930 axoneme cellular_component

KEGG:

id description
K23731 CCDC103; coiled-coil domain-containing protein 103

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026917006.2 True 1038 mRNA 0.49 3 3059168 3063811

Neighbor

gene id symbol gene type direction distance location
LOC113528219 LOC108276187 coding downstream 212 3057417 ~ 3058956 (-)
abi3a LOC108276098,LOC108434940 coding downstream 4201 3039981 ~ 3054967 (-)
LOC117598766 NA coding downstream 225314 2789176 ~ 2833854 (-)
rarab rara,LOC108261354,LOC107554136,LOC108434941,LOC107689638,LOC107737746,LOC107695008,LOC107582978 coding downstream 284079 2739238 ~ 2775089 (-)
LOC113528063 LOC108261353,LOC108261342,LOC108276032 coding downstream 658286 2392163 ~ 2400882 (-)
rpl23 RPL23,rpl23,rl23 coding upstream 2934 3066745 ~ 3072827 (-)
rpl3 LOC100304518,LOC103392522,LOC108434904,LOC103374755 coding upstream 91170 3154981 ~ 3159263 (-)
LOC113528655 NA coding upstream 91485 3155296 ~ 3155430 (-)
LOC113528657 NA coding upstream 92806 3156617 ~ 3156709 (-)
rusf1 c2h16orf58,cunh16orf58,LOC102793205,LOC107577286 coding upstream 119174 3182985 ~ 3191017 (-)
G204524 NA non-coding downstream 25940 3028815 ~ 3033228 (-)
G204518 NA non-coding downstream 88299 2965883 ~ 2970869 (-)
LOC117598767 NA non-coding downstream 458816 2599709 ~ 2600352 (-)
G204317 NA non-coding downstream 517643 2541126 ~ 2541525 (-)
LOC117598837 NA non-coding downstream 556973 2496612 ~ 2502195 (-)
G204664 NA non-coding upstream 107451 3171262 ~ 3174277 (-)
G205038 NA non-coding upstream 537191 3601002 ~ 3602239 (-)
G205030 NA non-coding upstream 553360 3617171 ~ 3620119 (-)
G205040 dus1l,LOC102781131 non-coding upstream 566883 3630694 ~ 3631383 (-)
G205063 NA non-coding upstream 640472 3704283 ~ 3738959 (-)
si:dkey-283b1.6 NA other downstream 19516 3034246 ~ 3039652 (-)
LOC113528062 LOC108276032,LOC108276106 other downstream 521057 2433149 ~ 2538111 (-)
LOC113528223 LOC108276032,LOC108261353,LOC108261342 other downstream 714256 2331676 ~ 2344912 (-)
ifi35 ifi35 other downstream 863628 2112445 ~ 2195540 (-)
LOC113528455 LOC108278793,LOC108434931,LOC107551147,LOC107729474 other downstream 981691 2065888 ~ 2077477 (-)
si:dkey-283b1.7 LOC108276203,LOC107737768,LOC104929916,LOC106607185 other upstream 10166 3073977 ~ 3078018 (-)
nde1 nde1 other upstream 319020 3382831 ~ 3413767 (-)
kcnc3a kcnc3a,LOC108259249,LOC107729449,LOC108427388,LOC107693499,LOC107548332,LOC105891716 other upstream 705044 3768855 ~ 3865849 (-)
G205173 gfap,LOC103392664 other upstream 976670 4040481 ~ 4044575 (-)
dcaf7 dcaf7,LOC100702343,LOC105030232 other upstream 1029102 4092913 ~ 4117643 (-)

Expression


Co-expression Network