XLOC_005358 (fbxo11a)


Basic Information

Item Value
gene id XLOC_005358
gene name fbxo11a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 24841719 ~ 24904944 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00010267
GTCCGAAAAAAACACACCAACAACACCCCGAATAAGAAAAACTGCCCCGGGTTGGTGTCCTTTTTCGGTGTAGACTGGTAATTTGACTTGTTTCAGACCTGAAGTATTGTGTAAATGCTAAGAACAACAGGATAAGGTTCGAGGGAAGCGTATTTTTTCTGGGTAAAGTCACCTCGCCAAATGAACTCCGTCAGAGCGAGCAGCAGGAGACCCAGGCGAGTGTCGAGGCCGCGCCCGGTGCAGCCGGAAAGAAACAACGCAGAAAGAGATGAGGACATCCCTGCAGATATGGTTGCAGAAGAATCTGGTCCAGGAGCTCAAAACAGTCCATACCAACTCCGTAGAAAGTCCCTGTTGCCTAAAAGAACCGTGTGCCCCACAAAAAACAGCATGGAGGGAGCCTCCACTTCAGCCACAGAAAACTTCGGTCACAGAGCTAAACGTGCAAGAGTGTCTGGAAAATCCCAGGACCTACCGGCTGCTCCAGCAGAGCAGTATCTCCAAGAGAAGCTTCCAGATGAAGTTGTTCTGAAGATTTTCTCCTACCTGCTCGAGCAGGACCTGTGCCAGGCTGCCTGCGTATGCAAGCGATTCAGTGAGCTTGCAAACGACCCTATTCTCTGGAAGAGACTATACATGGAAGTGTTTGAGTACACGCGACCCATGATGCATCCAGAACCAGGGAAGTTCTACCAGATCAACCCGGAAGAGTATGAGCAACCAAACCCATGGAAAGAGAGCTTTCAGCAGTTGTATAAGGGAGCACACGTAAAGCCTGGTTTTGCAGAACACTTTTATAGTAATCCAGCCAGATACAAAGGCAGAGAAAATATGTTGtattaTGACACCATTGAAGATGCACTAGGAGGAGTGCAAGAGGCCCACTTTGATGGCCTGATATTTGTGCATTCTGGCATTTACACCGATGAGTGGATCTACATTGAATCCCCCATCACAATGATTGGCGCAGCCTCAGGGAAGGTAGCTGATAAGGTCGTCATTGAAAACACTAGAGATTCAACGTTTGTTTTTATGGAGGGATCTGAAGATGCATATGTGGGCTACATGACTATCAGGTTCAACCCTGATGATAAGTCAGCACAGCATCATAACGCTCATCACTGTTTGGAGATCACGGTTAACTGCAGCCCCAATATCGACCACTGCGTTATCCGCAGCACCTGCACAGtGGGATCAGCGGTGTGTGTAAGTGGTCAGGGTGCTGGACCTACTATAAAACACTGCAACATCAGCGATTGTGAAAACGTTGGACTGTACATCACTGATCACGCACAGGGTATTTATGAAGATAACGAAATCTCAAACAACGCGCTTGCGGGTATTTGGGTAAAAAACCATGGCAATCCTATCATCAGACGTAATCATATCCACCATGGCAGAGACGTAGGAGTTTTTACCTTTGACCACGGCATGGGCTATTTTGAGAGCTGTAATATCCACAGAAACCGGATTGCAGGGTTTGAGGTGAAAGCATACGCTAACCCAACTGTTGTTCGCTGCGAGATCCATCATGGCCAAACAGGGGGCATCTATGTTCATGAAAAAGGCCGCGGCCAATttatagaaaacaaaatataTGCCAATAATTTTGCTGGTGTGTGGATCACCTCCAACAGTGACCCGACAATAAGGGGAAATGCCATCTTCAATGGAAACCAAGGAGGCGTTTACATATTTGGCGATGGGAGGGGCCTCATTGAGGGAAATGATATTTATGGAAACGCCCTGGCTGGCATTCAGATCAGAACGAACAGCTGTCCGATAGTAAGGCACAACAAAATCCATGATGGCCAGCATGGAGGAATCTATGTGCATGAAAAGGGTCAAGGTGTAATAGAGGAGAATGAGGTGTACAGCAACACTCTTGCTGGAGTCTGGGTGACCACAGGAAGCACGCCAGTACTTCGGAGGAACAGGATACACAGTGGAAAACAGGTTGGAGTGTATTTTTATGACAATGGACATGGAGTACTGGAAGATAATGATATCTACAATCACATGTACTCGGGAGTCCAGATCAGaacTGGAAGCAATCCAAAAATCAGAAGAAACAAAATTTGGGGTGGACAAAATGGAGGCATTCTTGTTTACAATTCCGGGCTGGGTTTCATTGAGGACAATGAAATCTTTGATAATGCCATGGCGGGGGTGTGGATTAAGACGGACAGCAACCCTACGCTACGCAGGAATAAGATCCATGATGGACGGGATGGGGGCATTTGCATATTCAATGGTGGGAGGGGGTTGTTGGAAGAGAACGACATCTTCAGGAATGCACAGGCTGGTGTTCTCATCAGCACGAACAGCCACCCGGTGCTGCGGAAGAACCGGATATTTGACGGATTTGCTGCAGGCATTGAAATCACAAATCATGCCACAGCGACTCTCGAAGGCAATCAGATTTTCAACAACAGATTCGGAGGTTTATTTCTAGCCTCTGGTGTCAACGTTACAATGAAAGATAATAAAATCATGAACAATCAGGATGCCATAGAGAAGGCGGTGAGCAGAGGTCAGTGCCTGTACAAGATTTCCAGTTACACCAGCTACCCCATGCACGATTTCTACAGGTGTCACACCTGTAACACGACAGACCGGAACGCAATTTGTGTGAATTGTATTAAGAAGTGCCACCAAGGGCATGATGTGGAGTTTATACGGCATGATAGGTTTTTTTGTGACTGCGGCGCGGGTACATTGTCTAATCCTTGCACACTGGCCGGAGAGCCAACCCACGACACGGACACTCTGTATGACTCTGCACCTCCCATAGAGTCCAACACATTACAGCACAACTGAGACGCAGCTCATCCTCCAACACAACACCCGGTCTGAATCTCACCTGCCCACCAATCCAGAGCACCACAGACACCTGGCCTGCAAAAAGTGTGTGTGGACAACAAAACTGTCAAGACTTCGAATGAATCTTTTTAAAGCGAAATGGAGGAACGCAGAACTCGGTGTAAAGCTGCCTCAGACTCTCCTGTATATCGCTGACTGAGAAGATGCAAGGAGAGATGATTTTGGAAGAGGGAAATATTGTGAAGCAATATGTTGACTCAGGATTACGAAGGTGGGGAGGACCACGGTGGTGTTGAGTTTTGGAGGGaagtagacttttttttttttttttggtccttcCAATCGCACGGTCTTACGCTGTGCATCCTGCCCTACGCAACTTTCAGTGCTACGTGGAGATTCAAGACCAGTTCGGCTGCAGTTTATGTACAGATCTGACCGCAAACAGAGCCACTAGGAGCTGCCGTTTACGGTTCCATCCATTCAAAGGAAGAGCCGTAGAAATTATGGCTTCCCTGGCGactgttttatttagtttgtttttgttgtttttttttgacagCCGATGTGCTGAAATATATGtatgatataaaaaaattaacaaaaaacaaaacaaaaaaaactatgtgATTAgcacttgcttttttaaatatgttaatatgttaTTCTGATCTACAAATATGATTTTAATGCTTTCtcatgtagttttgtattttcaGGCGAAAAGAATCTTACTGTATTtgaatgtcttttattttattatatattattattattgttattgttattaatatttttgttagcACACATTAGGCTCGCTGTAATCATACTTGCGTCTCAGCATATAAGTTCTTTCTGTGAAAGAGGAATAACAAAGAAAAGATGGGAAAACGAACACTAAATTGTGCTCCAGCAGTTTTATTTTTGGACTTGTTTTAAGTTGACTTCTTTTACGTGAGTGATTGGTGTGTGGAACTTGCGGTTGTGCAGAAATGTTTGCATCACCTTTGTTACTGCCATTATTTGAATAAGGGTTCTTTTCCCCTATTGTATTTCACTTTCTCATCCTCAAGTTCTTTTCATCTCCAAGCGGTTTGAAGTGTTAAGCAGGGGCCCAAAGAATTCTGAAACATTTAACAACTGTTAATCACATAcaatatttctattaaaatgatCTCGGTAAACATTTTTGTCCCACGTGGTCACGGCATCAATgacttttaaagcatttttattgcATTCTTTTGGGCCCATGGCCTGACTTGTGCCTGTTTTAAGTACAATAGGGATTTTGAAAGCCTTGCTGGAGTTGGTTATATCAGAGGCTTCCGGCCTCTTTGCAGCTGAGACGAGTATCTTTACAGCcccattgttttttgtttttttttgccccTCAAACTCCATCTATGTGTAATGTGGTGACTGTGGCTTCTCATGCAGCCTGAATTTTATGCATGTGTACCATAACATCTAGACTTAATATATTGTGAAGTCTTCAATAACCATTATGTAGATGCTAGTATGAATTTAAAAAGGGTTTAATTTCCTAGAAAAGAACAGAAACTGGtcatttttaagaaaataaactttattagATCAA
>TCONS_00010268
aaaaaccttaaaaaatatgtttttaacatGTATTTAGTGTCAGTGTGGTCCACTTGGGATCTAATGTTACAATGTATTCACAGTATACGTTTTCTCTATATATGCGTTCTTTGGGAATAGAACCATATTTCATTAAATTAAGAAATCATTATCTGGGTGATGCTTACTTgattctctctgtgtgtgtagtGGGATCAGCGGTGTGTGTAAGTGGTCAGGGTGCTGGACCTACTATAAAACACTGCAACATCAGCGATTGTGAAAACGTTGGACTGTACATCACTGATCACGCACAGGGTATTTATGAAGATAACGAAATCTCAAACAACGCGCTTGCGGGTATTTGGGTAAAAAACCATGGCAATCCTATCATCAGACGTAATCATATCCACCATGGCAGAGACGTAGGAGTTTTTACCTTTGACCACGGCATGGGCTATTTTGAGAGCTGTAATATCCACAGAAACCGGATTGCAGGGTTTGAGGTGAAAGCATACGCTAACCCAACTGTTGTTCGCTGCGAGATCCATCATGGCCAAACAGGGGGCATCTATGTTCATGAAAAAGGCCGCGGCCAATttatagaaaacaaaatataTGCCAATAATTTTGCTGGTGTGTGGATCACCTCCAACAGTGACCCGACAATAAGGTCAGCCTCCCTTTTATATTCATTGATGTGACTATATAATAATTAACTGTGGCACATCTATGGAGccaagtctaaaaaaaaaaa
>TCONS_00010269
ACACCAACAACACCCCGAATAAGAAAAACTGCCCCGGGTTGGTGTCCTTTTTCGGTGTAGACTGGTAATTTGACTTGTTTCAGACCTGAAGTATTGTGTAAATGCTAAGAACAACAGGATAAGGTTCGAGGGAAGCGTATTTTTTCTGGGTAAAGTCACCTCGCCAAATGAACTCCGTCAGAGCGAGCAGCAGGAGACCCAGGCGAGTGTCGAGGCCGCGCCCGGTGCAGCCGGAAAGAAACAACGCAGAAAGAGGTACCAAATGTGCTGTAGAGAAGGACAGACTGTAAGGCTCTCAGGTGATCAGTACACCAGGTATTGACAGATGAGGACATCCCTGCAGATATGGTTGCAGAAGAATCTGGTCCAGGAGCTCAAAACAGTC

Function

symbol description
fbxo11a Predicted to enable zinc ion binding activity. Predicted to be involved in protein ubiquitination; regulation of apoptotic process; and ubiquitin-dependent protein catabolic process. Predicted to be part of ubiquitin ligase complex. Orthologous to human FBXO11 (F-box protein 11).

GO:

id name namespace
GO:0042981 regulation of apoptotic process biological_process
GO:0016567 protein ubiquitination biological_process
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0000151 ubiquitin ligase complex cellular_component
GO:0008270 zinc ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-061103-70 Predicted to enable zinc ion binding activity. Predicted to be involved in protein ubiquitination; regulation of apoptotic process; and ubiquitin-dependent protein catabolic process. Predicted to be part of ubiquitin ligase complex. Orthologous to human FBXO11 (F-box protein 11).

Ensembl:

ensembl_id ENSDARG00000061631

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00010267 False 4423 mRNA 0.44 22 24841719 24904944
TCONS_00010268 False 736 lncRNA 0.40 3 24852261 24854777
TCONS_00010269 True 385 processed_transcript 0.49 3 24902671 24904931

Neighbor

gene id symbol gene type direction distance location
XLOC_005357 foxn2b coding downstream 9422 24796517 ~ 24832297 (-)
XLOC_005356 NA coding downstream 49852 24788503 ~ 24791867 (-)
XLOC_005355 NA coding downstream 120393 24714386 ~ 24721326 (-)
XLOC_005354 NA coding downstream 539704 24280847 ~ 24302015 (-)
XLOC_005353 NA coding downstream 661650 24179244 ~ 24180069 (-)
XLOC_005359 msh2 coding upstream 1162 24906106 ~ 24928497 (-)
XLOC_005360 socs5a coding upstream 138212 25043156 ~ 25065916 (-)
XLOC_005361 cript coding upstream 189155 25094099 ~ 25097520 (-)
XLOC_005362 rhoq coding upstream 205072 25110016 ~ 25150279 (-)
XLOC_005363 cox7a2l coding upstream 292439 25197383 ~ 25201576 (-)
XLOC_005350 NA non-coding downstream 1421409 23415226 ~ 23420310 (-)
XLOC_005367 NA non-coding upstream 518773 25423717 ~ 25432558 (-)
XLOC_005369 NA non-coding upstream 980715 25885659 ~ 25887891 (-)
XLOC_005374 CR854941.1 non-coding upstream 1235261 26140205 ~ 26140321 (-)
XLOC_005375 CR854941.2 non-coding upstream 1295941 26200885 ~ 26219991 (-)
XLOC_005378 NA non-coding upstream 1557362 26462306 ~ 26466782 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000063_05083449_05083858 NA coding CI01000063 null 5083449 ~ 5084210 (+)