slc17a7a (slc17a7a,LOC108260804,LOC108413988,LOC107731050,LOC107754185,LOC107653427,LOC101069507,LOC100693903)


Basic Information

Item Value
gene id slc17a7a
gene name slc17a7a,LOC108260804,LOC108413988,LOC107731050,LOC107754185,LOC107653427,LOC101069507,LOC100693903
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 6954113 ~ 6978133 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026917020.2
agagagagagagagagagagagagggagaggcgCACTTGAAGAACGGGAGTGTGCGCGCGCGAGGCGAGTCGGGACACCGGGAGTCGCGAGCATGGAGATCCGCCCGGAGCGCTTTAAGGCTGTGGCAGCAAAAACCCTGGGAAAGATACACAGGATCCTCGAGAAGCGTCAAGAGAATGGCGAGACTATCGAGCTCTCAGCAGAGGGAAGGCCGGAGATGGTGGAGGAGAAGGAGCTGCCCATCGTGGACTGCACATGCTTCGGGTTGCCACGCCGCTACATTATCGCCATTCTCTCAGGTCTCGGTTTTTGCATCTCCTTCGGCATCCGCTGCAATCTCGGCGTGGCCATCGTCAGCATGGTCAATGACCACACCGTTTATTACGGAAAGAAACCCGTCATAATGgCTGCTCAGTTCACATGGGACCCAGAGACAGTGGGGATGATCCACGGTTCATTTTTCTGGGGTTACATCGTTACGCAGATTCCCGGAGGATTCATCTGTCAGAAATTTGCTGCCAACAGagTGTTTGGCTTTGCGATCGTGGCCACGTCCACTCTGAACATGCTGATTCCGGCTGCAGCGCGGATCCACTATGGATGTGTCATCATGGTCAGGATATGCCAGGGTCTTGTGGAGGGTGTGTCATATCCTGCATGCCATGGGATCTGGGCCAAATGGGCTCCGCCTCTTGAGAGAAGCCGATTGGCCACGACAGCATTCTGTGGGTCTTATGCAGGGGCTGTAGTGGCGATGCCCCTGGCTGGTGTGTTAGTACAGTATAGTGGATGGTCGTCTGTTTTTTATGTGTATGGTAGCGTTGGGATACTGTGGTATCTCTTCTGGATCTTGGTGTCCTATGAGAGTCCAGCTGTTCATCCTACAATCACTCCAGAGGAGAGGAAATACATCGAGGATGCCATTGGAGAGACAGCAGGGTTGGTCAACCCCCTTCAGAAATTCAAAACACCTTGGCGTCATTTCTTCACCTCCATGCCAGTATATGCCATCATCGTGGCCAACTTCTGCAGAAGCTGGACCTTCTACCTGCTCCTCATCAGCCAGCCTGCATACTTCGAGGAGGTTTTTGGTTTCGAGATCAGCAAGGTGGGGTTGGTATCTGCCCTCCCTCACCTGGTGATGACTATCATAGTGCCGCTGGGGGGGCAGCTGGCCGACTACCTGAGATCCCACAACATAATGAGCACCACTAATGTCCGCAAGCTCATGAACTGcggagGATTCGGAATGGAGGCCACGCTGCTGTTGGTGGTGGGGTTCTCTCACTCTAAAGGAATGGCCATATCATTCCTCGTACTGGCTGTTGGCTTCAGTGGGTTTGCTATCTCAGGCTTTAATGTGAATCATTTGGACATAGCACCACGTTATGCCAGCATCCTGATGGGTATTTCTAATGGAGTGGGCACCTTATCGGGCATGGTGTGCCCTCTTATAGTGGGAGCCATGACCAAACATAAGACACGTGAAGAGTGGCAGTATGTCTTCCTCATCGCATCATTAGTGCATTATGGGGGTGTAATCTTTTATGGGATATTTGCATCGGGAGAGAAGCAGCCATGGGCCGACGCTGAGAACACCAGTGAGGAGAAATGTGGCATCCTGGATGAAGATGAGCTGGCCAATGAGACTGAAGAGCTTTACAGAACGGGCGGACAGTATGGTGCCATTAACCAGCCAAACGCCGCTGGCCCAAATGGGAGTGGAGGTGGGGGCGGAGCTGGATGGGTCTCAGACTGGGACAAAACAGAAGAATATGTACAACCAGTTGGGAGAAATAGTTATCTTTATGGAGGAGAGGGTGAAAGGGAGCTCACATAATGGGAGTGGTCCACATTTCCAGTCCCGGAGAGTTGGAATCTAGCACAATTTCCCTGCTCATAGACACAGAGTGATAGTTGGACCCTCAATAGCAAGCCCCATGCTGGACAAAGCTTTTGCTTAGCTGGACAGGGACACCAATAGGAATTTTGAGTCTCTATACAGGTTAATGCACTAGTCTTCTCCTTGTTCTCCTGGACAATTTTAGTTCTCCAGTTTACCCTTGGGCCTTCTTTCTACTCTCTTAGTAAGAGGGTTTCTGGATAGTTCTTAATTCCTAGTTCTACCCTTTACTCCCTCAAAGGGACAAATCAAGGAACCCATTTTTGTCTCTAACCAGACCCCTGAAATCAGGCCCATTTCCTTGTAGGTGGTTGTGGGAGAATGGAGAAAGTATGCAAATGATTTACTGGCCTTTTGGTTAATGCGAGCTGGCTAATATTAGATAAGTAACCAGCTGACTAAAGTGTTGGTGAGGTAGCTAACAATAAATGTAGGTGAAAGTTTGTTAGTGAAAGTAAATTGTGTGAATTCAGAACGTAATTATATTCCAAATTcactttttcagtgtgtgtagttggatTTGCGCCCATGTTTTTTGGCTATGtattggagccatagagcttgttattcctgaattttccaccaacacaacacaaatcaCAGCCAAGTTGACAGTATTTATAGGCCTACGTGTTTTTGAATTAATGAGACGTGAATAAAACCCATCATTTCAAGTGACCAGTGAAAGCAGCTAAGAACGCAAtaataatgctgcatttgaggtgaagttgcaacttgtaattcctaCCTACATCCTGTAAAAGCCACTGAAAATGCCCaatcaacttgaaatttcaactcatCAACTTAGGGTAGTCTTTCCAACTACCAGGTCCTTCCTTGTTTAAGgtgtgacatcaaatcaacatggccactcatgctgtgaacagtgtaaagtccccctttttccacttttaaattagtttattgCAGTACAGTATTGggtaaatctataacactgaccatactaatcactgttttgagaaggtaatgcCCAATATTAGAGTTATCTAatattagccagctagccagcttgttgctaatgctacTTGATATCGTTCGCTGGCTAGCTCATTGCTAATGCTACTTGCCATTGCCTGCTCTTGTTattgtgctgcaatttcagttcATAATGGTGCATGAAAGTATGAAGTTCACTATACTAGAACAGTACCAATTGCTACTTAGGCCTGTAACCGTGcggttaaagtagctttttattaGCTTTACGTGCTCTGAAAGAGCAAACAAACGCTTTCGTATaagtgtccatgttttttttgtttttgttttttttcatttcgcACATCGAAAAATGACGTTATTACAACTAGCAAATTACTACTTACAGGGAACCATGAGCTCAgaataaacataaatttaataattgttGGGTgggatttccaccactgtaataatttaaaaaaaaaaatcacagactccCTGgatatgcttcacagacccctgggGGTCTCTGGATGACACTTTTGGAACCACTTGTAGATCTTGACATCCAGAAACTACTGGTGAAGATGTCTATTTCATGCTAATTAAACTTCTTCGTGCTCACTAGGATGGTTGAGTTTGGCTGGCTAATCAAAGGCTTTGTCCGTCCAAGCTCAGGTTTCTGCTGTCCAGCCTCAGGCTTCACATAATCAGCCTGGGGGACTGCAGCTAAATACTACAGCCTAAACCTGGAATTATATTCGGTTAAATCAGGTGTCTTTGAGCAGGGAAAACTGGATCACTAGACTGGATTTCTGATGGATTTCAGCTCTCCATGGCTGGACTTGAGTTAACCATGGTTAACCTGGTAAA

Function

symbol description
slc17a7a Predicted to enable L-glutamate transmembrane transporter activity and neurotransmitter transmembrane transporter activity. Predicted to be involved in several processes, including glutamatergic synaptic transmission; neurotransmitter loading into synaptic vesicle; and regulation of synapse structure or activity. Predicted to act upstream of or within transmembrane transport. Predicted to be located in membrane. Predicted to be active in excitatory synapse. Predicted to be integral component of synaptic vesicle membrane. Is expressed in nervous system and otic vesicle. Orthologous to human SLC17A7 (solute carrier family 17 member 7).

NR:

description
PREDICTED: vesicular glutamate transporter 1

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K12302 SLC17A6_7_8; MFS transporter, ACS family, solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 6/7/8

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026917020.2 True 3722 mRNA 0.46 13 6954113 6978133

Neighbor

gene id symbol gene type direction distance location
zgc:55558 zgc:55558,p-ras,LOC108258948,LOC108413997,LOC107653435,LOC103023536,LOC107567516,LOC105894964,LOC103374945 coding downstream 10085 6937554 ~ 6944028 (-)
gys1 gys1,LOC108414029,LOC107653402,LOC107690304,LOC107731036 coding downstream 37118 6899007 ~ 6916995 (-)
tmem86b LOC108256452 coding downstream 63190 6888662 ~ 6890923 (-)
stk17al LOC108258001 coding downstream 93206 6846895 ~ 6860907 (-)
atp6v0a1a atp6v0a1,LOC107567567,LOC105890791 coding downstream 133744 6794354 ~ 6820369 (-)
slc6a16a LOC108260811,LOC107568576,LOC107690307,LOC108413965 coding upstream 2407 6980540 ~ 7002180 (-)
kcnj12b LOC108274453,LOC108412542,LOC107690312,LOC107567496,LOC107731081,LOC107754252,LOC107567486 coding upstream 80836 7058969 ~ 7067348 (-)
LOC113528017 NA coding upstream 157204 7135337 ~ 7146912 (-)
rpl19 rpl19,LOC108260855,LOC107084780,LOC108413899,LOC101075516,LOC107378566 coding upstream 239449 7217582 ~ 7225228 (-)
trnac-gca_16 NA coding upstream 292773 7270906 ~ 7270977 (-)
G206923 NA non-coding downstream 125967 6826368 ~ 6828146 (-)
G206924 NA non-coding downstream 128353 6824896 ~ 6825760 (-)
G206649 NA non-coding downstream 607750 6273816 ~ 6346363 (-)
G206628 NA non-coding downstream 749917 6203312 ~ 6204196 (-)
LOC113527891 NA non-coding downstream 764187 6187474 ~ 6189926 (-)
G207057 NA non-coding upstream 124115 7102248 ~ 7102389 (-)
G207198 NA non-coding upstream 198399 7176532 ~ 7176755 (-)
G207221 NA non-coding upstream 249252 7227385 ~ 7227664 (-)
G207226 NA non-coding upstream 259540 7237673 ~ 7237881 (-)
G207227 NA non-coding upstream 262108 7240241 ~ 7240907 (-)
stat5a sta5b,stat5,LOC108279147,LOC108444239,LOC105013349 other downstream 227948 6646058 ~ 6726165 (-)
G206604 NA other downstream 759117 6126910 ~ 6194996 (-)
LOC113528542 NA other downstream 993063 5953733 ~ 5961050 (-)
retsat LOC108257121,LOC108432054 other downstream 1003116 5940862 ~ 5950997 (-)
G206282 NA other downstream 1112636 5841137 ~ 5841477 (-)
G207231 spsb3 other upstream 340470 7318603 ~ 7321962 (-)
natd1 natd1,LOC107661164,LOC107568532,LOC107689058 other upstream 447584 7425717 ~ 7431112 (-)
crhr1 crhr1,LOC108261365,LOC107662410,LOC108413653 other upstream 581634 7559767 ~ 7705492 (-)
slc4a1a LOC108279353 other upstream 1271752 8249885 ~ 8267638 (-)
selenow2a mien1,sepw2a,LOC107566883,LOC107755209 other upstream 1301634 8279767 ~ 8289808 (-)

Expression


Co-expression Network