slc25a39 (LOC108276595,LOC108434938)


Basic Information

Item Value
gene id slc25a39
gene name LOC108276595,LOC108434938
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 2198749 ~ 2212411 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026917021.2
CCGCTTCCGGCCTGCAGGGGGCGCAGTGAGGCTGCTGCAGTGTGAGAACACTGTGTACTTCCGAGGATCTGgcagataaacagaaataaacggTGTGAAATGGAGGGACTGAAACAACCACCGCTTTCTTTTTTCCAGCTGGAGAGGCAGGAGGATCTAAAACCCTGAGCAAGCTCCATGTGGGAGAGGATTAAAGCCATGATCATCTGCTGAGGCTCTGAAAGgtggacAGGATGGCTGAGGGTCCTGCAGGTGGTCCGTCTCCCTCCATCACTCCAGTGCAGCAGATGGTGGCGTCCAGTGCCGGAGCGTTACTGACCGCCCTCTTcgTAACACCGTTAGATGTGGTGAAGATCAGATTGCAGTCCCAGCAGGCTCCAGTCTACAAAGctTTACCAGTGGAGTCTCGTGTGTGGAAGAGAAAATCTCATCTCCCGAAGTGGAAGTGTTTCCTCTACTGTAATGGACTGATGGATCACATCTACGTCTGCCAGAACACGACGGCCTGCAGCGCCTGGTACAAAACACCCACTCAATTCAGTGGGACCCTGGATGCGTTTGTGAAAATCACTCGCTCTGAAGGGCTGCGCTCTCTGTGGAGTGGCCTTCCTCCTACACTtgtgatgGCGGTTCCCACCACAGTCATCTACTTCACCTGCTATGACCAGCTCAAGGACTTCCTGTGTTATGGCCTTGGTTACCACAGCAACCACGTATCTGTCATTGCCGGGGGTCTGGCGAGACtggGCGCGGTCACAGTGATCACCCCGTTGGAGTTGGTGCGCACTAAGATGCAGTCACGGCGTGTGTCGTACAGTGAGCTGCGAGTGTGTATCAGATCGGCCGTGGCTCAGAGCGGAGTGCTCTCGCTGTGGAGGGGGTGGGGACCCACTGTGCTCAGAGACGTCCCCTTCTCTGcCATGTACTGGTTTAACTATGAGCTGATGAAAGCAGAGCTGTGTGAGAGATACAGAACACCCCAGGCTTCTTTCACCATCAGCTTCACTGCAGGAGCCATTTCTGGAGCTATCGCTGCGATCACGACGCTGCCGTTCGACGTGGTGAAAACACGCAGGCAGATCGAGCTGGGAGAAATGGAGATTCTCGGAGCTCCTCTGAAGAAGCCTTCTTCCACATGGCTCACAATGAAGAGTATCTGGAATGAAACCGGCTACCGAGGCCTGTTTGCTGGTTTCCTGCCGCGGGTGATTAAAGTGGCTCCGGCGTGCGCCATCATGATCAGCACGTACGAGTTCGGGAAGGCTTTCTTCCGCAAGCACAACGAGGAGCAGCGAGGTGGCTGAGACGTGCGGAGCATCACCGCCGAGCTGCATGATCATTTTCACCCAAACTGACCTGCCTTTAGCTCGGCCTTGGCATGCGTCCTGTTCTTATCTCCACAGGTTCTGGGCAGCAGGGCTGAGGCTCTCGGGTTCAGTTCAGTAACGCTGTGcatgagttatttatttatttatttccctgaGACGAGATTTACTGCATTGCAGTAAGACTGCAGGACACTGGAACCTCACCAAGGCATGCTGGGAAAACCGCTATCCCCGCATTTATCTGCACGCATGGGTACTCTGAGGGAATATTATTCAGCCGATGAATTAATGTGGGTTGTGAAATGGTTCCTGGTTCCATGTGGTCTTCATGTATGTCATATGATGCCAGTCAAGTCTGAAATAGCAGATGAGTAGACAGTGTTCATACACTGCCCCCTGGTGTTTATACACTGCAACTACAGCAGAGATTAATCAGAATCGCATCGGGTTTATGGAGAAATATGGTTGAATATTGAAGCACAATGTGCCCTCATCGATTCCCCCTAATGATTTAGAAGTGCACATCTGTTAGGTCACACCTAAAGCACAGCTGGATCATTTCCGCTGTCCTGTGAACGGAAAAAACATCTAAATTTAGAATGTTACACAACAGCATCTGTTtgagaaaaacacatttgctATAATTTGTCCATTATTGCTTCTCCATAcatttataaagttataaataacTTTATCTGATCGCACTGACTTCTGGGTAATTCCCATCCCTGAAGTCTGCATGGAGGTTGTCTTGATCCGTTATCCTGTGTTCTTGTGCATGTCTGACTTTAAAGGCACTCATTTCCTGCCCTGGAAATGTGTCAGTTCAGAAAGCTTTCTGGACAAGAAAATCAGGatgttctgtttttaaaataatatagatCCAAGACACTAACGTTCTAATCCTGTTGTCTTTAGAAATCTTTTTCTCAGCATTGAAACAGTGAAAAGTGTTAAAGAGCTTAGCAAGAAAATGGATCATAGACATAGACGTAGTCTTTAAAGATTCAGTAAATCGATCCGGATCTGTGTGAAAAGGTCAAAGCTTCACTTGAGCTGATGACGAGTTCAAAAGGCCCtaagcaaaatattaaaatcgCAGTGCCATTTAGCTTATTCCTACAGTGGATCTTCTGGTTTTTATACATCCTAGTAGCAGTGCTAATTTTCCTGATGAAACAATGAACCCTTTTACTTGAAATATATgataaaagtaaataacattttccTCACCAAGGAAATAATTTCTGCTTTTTATATTGCGTGTCTGTTATAATACTAGCTAGCCGGAACTAGCGTAAGTTACCTGATGACACTAACCAAAatcagtgaaatttattttacttttattaagtGTATGCAGCgaaataaatacactcacaaGGGTAATGTTGTTAAATAAACCTTTATGTAGTCCACGCACATCTGAGTAGGAGAAAGACTTTATCCTGTAATGTGCATTTAGAAAGCAAATAAATCAAGTACGACCCTCAA

Function

NR:

description
PREDICTED: solute carrier family 25 member 39-like isoform X1

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0006783 heme biosynthetic process biological_process
GO:0006828 manganese ion transport biological_process
GO:0005743 mitochondrial inner membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016530 metallochaperone activity molecular_function

KEGG:

id description
K15119 SLC25A39_40; solute carrier family 25, member 39/40

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026917021.2 True 2822 mRNA 0.47 13 2198749 2212411

Neighbor

gene id symbol gene type direction distance location
rpl27 rpl27,LOC107551168,LOC106601555 coding upstream 3723 2187365 ~ 2195026 (+)
grna NA coding upstream 24138 2130528 ~ 2174611 (+)
LOC117598829 NA coding upstream 42900 2155599 ~ 2155849 (+)
bcat2 bcat2,LOC108278805,LOC108434932,LOC107680854,LOC107561362,LOC107687634,LOC105897681,LOC107729480 coding upstream 84680 2092559 ~ 2114069 (+)
hsd17b14 hsd17b14,dhb14,LOC106606926 coding upstream 107296 2084552 ~ 2091453 (+)
nbr1b LOC108276620,LOC108437991 coding downstream 27198 2239609 ~ 2258256 (+)
LOC117598986 LOC108276106,LOC108276032 coding downstream 409759 2622170 ~ 2691714 (+)
hspb9 NA coding downstream 642985 2855396 ~ 2856253 (+)
LOC117598987 LOC108276032 coding downstream 695761 2908172 ~ 2917545 (+)
LOC117598765 LOC108276106,LOC108276032,LOC108261353,LOC108261342 coding downstream 701847 2914258 ~ 2983091 (+)
G203965 NA non-coding upstream 416 2198113 ~ 2198333 (+)
G203955 NA non-coding upstream 39466 2154436 ~ 2159283 (+)
G203935 NA non-coding upstream 190143 2008401 ~ 2008606 (+)
G203913 NA non-coding upstream 211534 1919023 ~ 1987215 (+)
G203906 NA non-coding upstream 276270 1905839 ~ 1922479 (+)
G203973 NA non-coding downstream 12138 2224549 ~ 2227164 (+)
G203967 NA non-coding downstream 46071 2258482 ~ 2260374 (+)
G203996 NA non-coding downstream 176573 2388984 ~ 2392499 (+)
LOC117598836 NA non-coding downstream 311577 2523988 ~ 2524878 (+)
G204316 NA non-coding downstream 328703 2541114 ~ 2541458 (+)
rundc1 rundc1 other upstream 12585 2177683 ~ 2186164 (+)
ppfia3 ppfia3,LOC107551161,LOC107687647,LOC107563979,LOC107732887,LOC107729434 other upstream 210834 1917205 ~ 1987915 (+)
ccndx LOC108280826 other upstream 309234 1883052 ~ 1889515 (+)
syt3 syt3,LOC107551154,LOC107563990,LOC107680842 other upstream 578775 1561524 ~ 1619974 (+)
kmt5c LOC108280634 other upstream 837289 1353329 ~ 1361460 (+)
LOC113528221 LOC108276032,LOC108276106 other downstream 655357 2867768 ~ 2908043 (+)
pyya LOC108276154,LOC108434917 other downstream 791197 3003608 ~ 3012859 (+)
LOC113527909 NA other downstream 980293 3192704 ~ 3200133 (+)
glyr1 glyr1,LOC107688117,LOC107590383,LOC107721499 other downstream 1321878 3534289 ~ 3661164 (+)
limd2 limd2,LOC107674139,LOC107658411 other downstream 1754322 3966733 ~ 3986284 (+)

Expression


Co-expression Network