copz2 (copz2,LOC108260256,LOC108413159,LOC107740614,LOC107662379,LOC107710054,LOC107585036,LOC107687783,LOC105013247,LOC108246742,LOC106527321,LOC106912034)


Basic Information

Item Value
gene id copz2
gene name copz2,LOC108260256,LOC108413159,LOC107740614,LOC107662379,LOC107710054,LOC107585036,LOC107687783,LOC105013247,LOC108246742,LOC106527321,LOC106912034
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 9464331 ~ 9474478 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026917024.2
GCGCAGGGTTGGATTTAGCCATTTTGGCGGATTTGCTCCACCCCCTGTATGAGTCAGAGGTTTTTACGAGCGCTCCAGTAGTGACAGCTCAAAGCTGTCCACGTCAACACTAAACACCACCATGGACTCCGTGGCTCTGGAGCCTTCGCTGTACACAGTTAAGGCAGTCTTCATCTTGGATAATGACGGAAACCGACTTCTTTCGAAGTACTATGACACAGAGCTGTATCCCTCTATGAAGGAGCAGAAAAATTTCGAGAAGAACGTCTTCAACAAAACACATAAAGCAGACAATGAAATAGCCTTCCTGGAGGGCATGACTATAGTGTACAAGAGCAGCATAGACCTGTTCTTCTATGTGGTGGGCAGTGCACAGGAGAATGAGCTGATGTTGATGGCGGTGTTGAACTGTTTGTTTGAGTCTCTCAATCAAATCTTGAGGAAAAATGTGGAGAAAAGATGTCTGCTGGATAATCTGGATGGAGTGTTTCTGGTGGTGGATGAGATCATTGATGGAGGGGTGATCCTGGAGAGCGACCCGCAGCAGGTAGTCGAGAAGGTCAACTACAGGACTGATGACAGCCCTCTATCAGAACACAGTGTGGCTCAGCATATCACTGAGAAACTGGCTATCACCACTAATgtGTTACAGACTGCAAAAGAACAGATCAAGTGGTCAATACTGAAATAATCTTCTTCACAGTGAGCGGATCTGTAAATAATCTGAAGTGATTTGGGAAATATTGTAGccattcagctttattttttctgaAATCCACTAGGCTAATTAATTATGATACTAGCTGTAGGTTCAGCTGTTTTTATCCTTAAGCCATTCAGGCTTGAATGCTTTATTAAACAGGTTATACTGTGCATAAAACTAAGAAGAAGGGTCATTTTCCACACGCTTTGAGTTTGATGGCTGTTATTCAAGAAGCTCCTTGTATTTAGTAATGTGGACAGTAAGGATCGACCTGATTTGCACTGAATATTTTCAGCATGTGCCCCAGATGCTAGAGTTTTTTGTTGAAAGTGTTCTGTAAAAAGGAATAATCAAAATTGTTTGTCTGAttcaattttgtatttattgttttaagaCTAAATATGCGATAACAATTGTAGCACACTTCTGACAGTTGTAGCCAAACACATTTGGggtattatttgttatttgaaaCTTTTATCAGTACAACCTTATTAATGCACCACAAATCTTAGTTTCTAGATCTGTTTGTCCTGATAACATCTGCTTTAAAACTGAGATAGGAGCAAGTGGCTTTGCTACATTGGGTTACTTCTGTAAATGATGTTACATTGGGCCTATTATCAGGCCCTTCACTATCCAAATACTATTTTTGACTAAAAATTAAGTCTTGTTCAGAAGCCAAAGAGTAAATATAAAGGCAAATTTGTATGTTACTGAAGAAATTGTAAGAACGTTATATTCATGCCCTGTCTTAATTATTAGTCACATTTATTTAAGCTATGTCTAACGAAAACTTTAATAAGATAAGTGTAATCATAAGTGTGTTTTCTGACTTGTAGCCCTGCTGCAGGTAACAGAGCTACATTTTATTATGACTTGGGTAGTCCctagttgtttttattttggtagGAATGGTGTAATGAGTGATCTTTTATTTCAGAAACACTTAACCGGATGTGGAAATTGTCTCTGGATGTTAATAAATCTCCTTTTGATAAGACA
>XM_026917026.2
GCGCAGGGTTGGATTTAGCCATTTTGGCGGATTTGCTCCACCCCCTGTATGAGTCAGAGGTTTTTACGAGCGCTCCAGTAGTGACAGCTCAAAGCTGTCCACGTCAACACTAAACACCACCATGGACTCCGTGGCTCTGGAGCCTTCGCTGTACACAGTTAAGGCAGTCTTCATCTTGGATAATGACGGAAACCGACTTCTTTCGAAGTACTATGACACAGAGCTGTATCCCTCTATGAAGGAGCAGAAAAATTTCGAGAAGAACGTCTTCAACAAAACACATAAAGCAGACAATGAAATAGCCTTCCTGGAGGGCATGACTATAGTGTACAAGAGCAGCATAGACCTGTTCTTCTATGTGGTGGGCAGTGCACAGGAGAATGAGCTGATGTTGATGGCGGTGTTGAACTGTTTGTTTGAGTCTCTCAATCAAATCTTGAGGAAAAATGTGGAGAAAAGATGTCTGCTGGATAATCTGGATGGAGTGTTTCTGGTGGTGGATGAGATCATTGATGGAGGGGTGATCCTGGAGAGCGACCCGCAGCAGGTAGTCGAGAAGGTCAACTACAGGACTGATGACAGCCCTCTATCAGAACACAGTGTGGCTCAGgtGTTACAGACTGCAAAAGAACAGATCAAGTGGTCAATACTGAAATAATCTTCTTCACAGTGAGCGGATCTGTAAATAATCTGAAGTGATTTGGGAAATATTGTAGccattcagctttattttttctgaAATCCACTAGGCTAATTAATTATGATACTAGCTGTAGGTTCAGCTGTTTTTATCCTTAAGCCATTCAGGCTTGAATGCTTTATTAAACAGGTTATACTGTGCATAAAACTAAGAAGAAGGGTCATTTTCCACACGCTTTGAGTTTGATGGCTGTTATTCAAGAAGCTCCTTGTATTTAGTAATGTGGACAGTAAGGATCGACCTGATTTGCACTGAATATTTTCAGCATGTGCCCCAGATGCTAGAGTTTTTTGTTGAAAGTGTTCTGTAAAAAGGAATAATCAAAATTGTTTGTCTGAttcaattttgtatttattgttttaagaCTAAATATGCGATAACAATTGTAGCACACTTCTGACAGTTGTAGCCAAACACATTTGGggtattatttgttatttgaaaCTTTTATCAGTACAACCTTATTAATGCACCACAAATCTTAGTTTCTAGATCTGTTTGTCCTGATAACATCTGCTTTAAAACTGAGATAGGAGCAAGTGGCTTTGCTACATTGGGTTACTTCTGTAAATGATGTTACATTGGGCCTATTATCAGGCCCTTCACTATCCAAATACTATTTTTGACTAAAAATTAAGTCTTGTTCAGAAGCCAAAGAGTAAATATAAAGGCAAATTTGTATGTTACTGAAGAAATTGTAAGAACGTTATATTCATGCCCTGTCTTAATTATTAGTCACATTTATTTAAGCTATGTCTAACGAAAACTTTAATAAGATAAGTGTAATCATAAGTGTGTTTTCTGACTTGTAGCCCTGCTGCAGGTAACAGAGCTACATTTTATTATGACTTGGGTAGTCCctagttgtttttattttggtagGAATGGTGTAATGAGTGATCTTTTATTTCAGAAACACTTAACCGGATGTGGAAATTGTCTCTGGATGTTAATAAATCTCCTTTTGATAAGACA
>XR_004579423.1
GCGCAGGGTTGGATTTAGCCATTTTGGCGGATTTGCTCCACCCCCTGTATGAGTCAGAGGTTTTTACGAGCGCTCCAGTAGTGACAGCTCAAAGCTGTCCACGTCAACACTAAACACCACCATGGACTCCGTGGCTCTGGAGCCTTCGCTGTACACAGTTAAGGCAGTCTTCATCTTGGATAATGACGGAAACCGACTTCTTTCGAAGTACTATGACACAGAGCTGTATCCCTCTATGAAGGAGCAGAAAAATTTCGAGAAGAACGTCTTCAACAAAACACATAAAGCAGACAATGAAATAGCCTTCCTGGAGGGCATGACTATAGTGTACAAGAGCAGCATAGACCTGTTCTTCTATGTGGTGGGCAGTGCACAGGAGAATGAGCTGATGTTGATGGCGGTGTTGAACTGTTTGTTTGAGTCTCTCAATCAAATCTTGAGGAAAAATGTGGAGAAAAGATGTCTGCTGGATAATCTGGATGGAGTGTTTCTGGTGGTGGATGAGATCATTGATGGAGGGGTGATCCTGGAGAGCGACCCGCAGCAGGTAGTCGAGAAGGTCAACTACAGGTTTGTGTCAGAGCAAGCCTTTGGCTTTGTCCTGTTCGAATACATCACGGGTAACATGGAGGGCCAGGCACAGAAGAGCCAGCCTTTTTAACTCGCACAGAAAAGACCCTCTTCCTCTCCACCTCCTTCTCACAGTAAAGAGAGAGGAATGGAGAAAACaggagggggagggagagaggataTAGACTGATGACAGCCCTC

Function

symbol description
copz2 Predicted to be involved in intra-Golgi vesicle-mediated transport; intracellular protein transport; and retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum. Predicted to act upstream of or within protein transport and vesicle-mediated transport. Predicted to be located in Golgi membrane and cytoplasmic vesicle. Predicted to be part of COPI vesicle coat. Orthologous to human COPZ2 (COPI coat complex subunit zeta 2).

NR:

description
PREDICTED: coatomer subunit zeta-1-like isoform X2

GO:

id name namespace
GO:0015031 protein transport biological_process
GO:0016020 membrane cellular_component

KEGG:

id description
K20472 COPZ, RET3; coatomer subunit zeta

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026917024.2 True 1708 mRNA 0.39 10 9464331 9474478
XM_026917026.2 False 1675 mRNA 0.39 9 9464331 9474478
XR_004579423.1 False 771 misc_RNA 0.48 9 9466480 9474478

Neighbor

gene id symbol gene type direction distance location
LOC113528600 LOC108258913 coding downstream 51721 9401685 ~ 9412610 (-)
adsl adsl coding downstream 72971 9380674 ~ 9391360 (-)
tmem150b tmem150b coding downstream 84735 9373152 ~ 9379596 (-)
pdgfbb LOC108260470 coding downstream 128701 9321259 ~ 9335630 (-)
pvalb6 pvalb6,LOC108258409,LOC108412390,LOC100701083,LOC103371237,LOC107690741,LOC101478422,LOC107602319 coding downstream 178391 9247782 ~ 9285940 (-)
cbx1a LOC108279860,LOC108413138,LOC103037352 coding upstream 15870 9490348 ~ 9501580 (-)
hoxb1a hoxb1,LOC108274656 coding upstream 179965 9654443 ~ 9658406 (-)
hoxb2a hoxb2,LOC107687781 coding upstream 195131 9669609 ~ 9673077 (-)
hoxb3a hoxb3,hoxb3a,LOC108278472,LOC107687775,LOC107740615,LOC107582888 coding upstream 201284 9675762 ~ 9722637 (-)
hoxb4a hoxb4,hoxb4a,LOC107740620,LOC107585041 coding upstream 223553 9698031 ~ 9702424 (-)
LOC117598997 NA non-coding downstream 18227 9441986 ~ 9446104 (-)
G208189 NA non-coding downstream 361205 9102911 ~ 9103126 (-)
G208158 nupr1,LOC108413333,LOC107660958,LOC107739393,LOC107567154,LOC100692788,LOC103393451 non-coding downstream 400824 9061580 ~ 9063507 (-)
G208153 NA non-coding downstream 433353 9030525 ~ 9030978 (-)
G208151 NA non-coding downstream 439348 9024761 ~ 9024983 (-)
G208391 NA non-coding upstream 20145 9494623 ~ 9505750 (-)
G208473 NA non-coding upstream 272018 9746496 ~ 9748039 (-)
LOC117599011 NA non-coding upstream 355149 9829627 ~ 9927942 (-)
LOC113528446 NA non-coding upstream 362772 9837250 ~ 9838412 (-)
G208613 msl1 non-coding upstream 440429 9914907 ~ 9917529 (-)
prr15la LOC108273894,LOC108412372 other downstream 44747 9409804 ~ 9419584 (-)
dnal4a dnal4,LOC108261343,LOC108412416,LOC108436609,LOC106591471 other downstream 260691 9196496 ~ 9203640 (-)
LOC113527952 LOC108260010,LOC108274064 other downstream 321460 9112966 ~ 9142871 (-)
ndufa4l ndufa4l,LOC108260900,LOC108413413,LOC107684646,LOC107590798,LOC103026352,LOC107582867 other downstream 751013 8707954 ~ 8713318 (-)
selenow2a mien1,sepw2a,LOC107566883,LOC107755209 other downstream 1174523 8279767 ~ 8289808 (-)
hoxb8a hoxb8a,LOC108278530,LOC108413053,LOC103044850,LOC107582957,LOC107662386,LOC107585089 other upstream 255373 9729851 ~ 9732566 (-)
tecpr1b LOC108276900 other upstream 976246 10450724 ~ 10470518 (-)
hmox1a hmox1,LOC108432221 other upstream 2167679 11642157 ~ 11647997 (-)
zgc:162612 foxd1,LOC108278341,LOC107757501 other upstream 2225371 11699849 ~ 11701172 (-)
LOC113528332 hs3st6,LOC102795972 other upstream 2823298 12297776 ~ 12315498 (-)

Expression


Co-expression Network